Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001021

Physical Location & Seq

Genomic Coordinates Forward (+)

29605308 .. 29608708

Gene Structure 3401 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G315000.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGATGCTTATTGGAGGTACAGCGACGCTCGGCAACCACCACCGTCGGCGATGAATTCAGTCGTCGGAAAGCGCCCTCGCTCCGATTACGATGCCCATGGTGGCCACGACCTGCCGAGTTATTATTCCCATGAAGATGATAGAGGTTCTCTCCGTGGAATTAGAGATACTGACTCCATTAATGCCTCATATGATCGCTACCTGCGCAGTGCGCAAATGCCATCATATAGTGGGGGACAGTCTGCTAGAACCTTGAGTGGGGGACTACCTGGTCGTTCTGTTGATGATCCACGGATGATGGGAATGGGAGGTGTTGACCCAGGGGCACCTGTAAAAGACAGGGTTTTAGGAATGGGAAGTGGACGGCCTGAGGCTCCCCTACCTCCTGGTGCTACCAGTACGCTATTTGTGGAGGGATTGCCTCCCAACTGTACACGACGTGAAGTAGCTCATATATTTCGCCCTTTTGTTGGCTACAAGGAAGTGAGACTCGTAAGCAAGGAATCGAGACATCCTGGAGGAGATCCTCTGGTACTTTGTTTCGTTGATTTTGTGAGCCCAGCCCATGCAGCCACAGCTATGGATGCGTTGCAAGGTTATAAATTCGATGAGCATGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGGTATCCTGGTGCGAGGTCAGGTGGTGGGCACCGAGGGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

234

Amino Acids

25.39

Weight (kDa)

9.09

Isoelectric Point (pI)

53.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21326 AT1G76940 AT1G76940 AT1G76940
fragaria_vesca	FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_7g32221 FvH4_7g32221
malus_domestica	MD01G1224900.v1.1 MD05G1020700.v1.1 MD07G1295500.v1.1 MD10G1021500.v1.1 MD10G1021600.v1.1
prunus_persica	Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1
pyrus_communis	pycom01g23350 pycom05g01200 pycom07g26810 pycom10g01470 pycom10g01480
rosa_chinensis	RchiOBHm_Chr1g0381871 RchiOBHm_Chr6g0276391
rosa_laevigata	RLG00000013397 RLG00000026202
rosa_multiflora	Rmu_sc0004126.1_g000019 Rmu_sc0004248.1_g000007 Rmu_sc0010238.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278360 Rroxscaffold_7G00192260
rosa_rugosa	Rorug01G0432000 Rorug06G0101200
rosa_samantha	Rh1AG455100 Rh1BG412300 Rh1CG427000 Rh1DG444600 Rh6AG211900 Rh6BG216100 Rh6CG218400 Rh6CG218800 Rh6DG208300
rosa_wichuraiana	Rw1G041390 Rw1G041460 Rw6G018500 Rw6G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	603
AasI	GACNNNNNNGTC	1 cut(s)	273
Acc16I	TGCGCA	2 cut(s)	209, 216
Acc36I	ACCTGC	2 cut(s)	123, 213
AccB1I	GGYRCC	2 cut(s)	328, 684
AciI	CCGC	1 cut(s)	5
AclWI	GGATC	2 cut(s)	284, 521
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	2 cut(s)	58, 605
AdeI	CACNNNGTG	1 cut(s)	443
AfaI	GTAC	4 cut(s)	23, 403, 436, 537
AfiI	CCNNNNNNNGG	3 cut(s)	261, 473, 628
AjiI	CACGTC	1 cut(s)	443
AjnI	CCWGG	5 cut(s)	271, 322, 388, 517, 661
AluBI	AGCT	2 cut(s)	452, 581
AluI	AGCT	2 cut(s)	452, 581
Alw26I	GTCTC	2 cut(s)	484, 505
AlwI	GGATC	2 cut(s)	284, 521
AoxI	GGCC	2 cut(s)	106, 368
ApeKI	GCWGC	1 cut(s)	572
ApoI	RAATTY	2 cut(s)	58, 605
AseI	ATTAAT	1 cut(s)	183
AspLEI	GCGC	3 cut(s)	78, 210, 217
AxyI	CCTNAGG	1 cut(s)	372
BaeGI	GKGCMC	2 cut(s)	331, 687
BalI	TGGCCA	1 cut(s)	108
BanI	GGYRCC	2 cut(s)	328, 684
BanII	GRGCYC	1 cut(s)	563
BbvI	GCAGC	1 cut(s)	584
BccI	CCATC	2 cut(s)	232, 295
BceAI	ACGGC	1 cut(s)	383
BcgI	CGANNNNNNTGC	4 cut(s)	77, 111, 635, 669
BciT130I	CCWGG	5 cut(s)	273, 324, 390, 519, 663
BciVI	GTATCC	1 cut(s)	669
BcoDI	GTCTC	2 cut(s)	484, 505
BfaI	CTAG	1 cut(s)	249
BfoI	RGCGCY	1 cut(s)	79
BfuAI	ACCTGC	2 cut(s)	123, 213
BfuI	GTATCC	1 cut(s)	669
BisI	GCNGC	1 cut(s)	573
BlsI	GCNGC	1 cut(s)	574
Bme1390I	CCNGG	5 cut(s)	273, 324, 390, 519, 663
BmgBI	CACGTC	1 cut(s)	443
BmiI	GGNNCC	3 cut(s)	330, 378, 686
BmrFI	CCNGG	5 cut(s)	273, 324, 390, 519, 663
BmsI	GCATC	2 cut(s)	85, 577
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BpmI	CTGGAG	1 cut(s)	540
BpuEI	CTTGAG	1 cut(s)	277
BsaJI	CCNNGG	6 cut(s)	100, 157, 293, 322, 323, 688
Bsc4I	CCNNNNNNNGG	3 cut(s)	261, 473, 628
Bse1I	ACTGG	1 cut(s)	399
Bse21I	CCTNAGG	1 cut(s)	372
BseBI	CCWGG	5 cut(s)	273, 324, 390, 519, 663
BseDI	CCNNGG	6 cut(s)	100, 157, 293, 322, 323, 688
BseGI	GGATG	4 cut(s)	13, 303, 514, 592
BseLI	CCNNNNNNNGG	3 cut(s)	261, 473, 628
BseMII	CTCAG	1 cut(s)	363
BseNI	ACTGG	1 cut(s)	399
BseRI	GAGGAG	1 cut(s)	537
BseSI	GKGCMC	2 cut(s)	331, 687
BseXI	GCAGC	1 cut(s)	584
BseYI	CCCAGC	1 cut(s)	562
BshFI	GGCC	2 cut(s)	108, 370
BshNI	GGYRCC	2 cut(s)	328, 684
BslFI	GGGAC	2 cut(s)	252, 279
BslI	CCNNNNNNNGG	3 cut(s)	261, 473, 628
BsmAI	GTCTC	2 cut(s)	484, 505
BsmFI	GGGAC	2 cut(s)	252, 279
BsnI	GGCC	2 cut(s)	108, 370
Bsp1286I	GDGCHC	3 cut(s)	331, 563, 687
Bsp1407I	TGTACA	1 cut(s)	434
Bsp143I	GATC	3 cut(s)	196, 289, 526
Bsp19I	CCATGG	1 cut(s)	100
BspACI	CCGC	1 cut(s)	5
BspANI	GGCC	2 cut(s)	108, 370
BspCNI	CTCAG	1 cut(s)	364
BspLI	GGNNCC	3 cut(s)	330, 378, 686
BspMI	ACCTGC	2 cut(s)	123, 213
BspPI	GGATC	2 cut(s)	284, 521
BspT107I	GGYRCC	2 cut(s)	328, 684
BsrGI	TGTACA	1 cut(s)	434
BsrI	ACTGG	1 cut(s)	399
BssECI	CCNNGG	6 cut(s)	100, 157, 293, 322, 323, 688
BssMI	GATC	3 cut(s)	196, 289, 526
BssT1I	CCWWGG	1 cut(s)	100
Bst2UI	CCWGG	5 cut(s)	273, 324, 390, 519, 663
Bst4CI	ACNGT	4 cut(s)	48, 243, 434, 623
BstAUI	TGTACA	1 cut(s)	434
BstDEI	CTNAG	1 cut(s)	372
BstDSI	CCRYGG	3 cut(s)	100, 157, 293
BstF5I	GGATG	4 cut(s)	13, 303, 514, 592
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	3 cut(s)	78, 210, 217
BstKTI	GATC	3 cut(s)	199, 292, 529
BstMAI	GTCTC	2 cut(s)	484, 505
BstMBI	GATC	3 cut(s)	196, 289, 526
BstMWI	GCNNNNNNNGC	5 cut(s)	207, 214, 572, 578, 587
BstNI	CCWGG	5 cut(s)	273, 324, 390, 519, 663
BstSCI	CCNGG	5 cut(s)	271, 322, 388, 517, 661
BstSLI	GKGCMC	2 cut(s)	331, 687
BstV1I	GCAGC	1 cut(s)	584
BstX2I	RGATCY	1 cut(s)	526
BstXI	CCANNNNNNTGG	1 cut(s)	583
BstYI	RGATCY	1 cut(s)	526
Bsu36I	CCTNAGG	1 cut(s)	372
BsuI	GTATCC	1 cut(s)	669
BsuRI	GGCC	2 cut(s)	108, 370
BtgI	CCRYGG	3 cut(s)	100, 157, 293
BtgZI	GCGATG	1 cut(s)	68
BtrI	CACGTC	1 cut(s)	443
BtsCI	GGATG	4 cut(s)	13, 303, 514, 592
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
BveI	ACCTGC	2 cut(s)	123, 213
CfoI	GCGC	3 cut(s)	78, 210, 217
CseI	GACGC	1 cut(s)	38
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	4 cut(s)	22, 402, 435, 536
CviAII	CATG	4 cut(s)	101, 134, 569, 617
CviJI	RGCY	9 cut(s)	108, 370, 377, 452, 477, 561, 566, 575, 581
CviKI_1	RGCY	9 cut(s)	108, 370, 377, 452, 477, 561, 566, 575, 581
CviQI	GTAC	4 cut(s)	22, 402, 435, 536
DdeI	CTNAG	1 cut(s)	372
DpnI	GATC	3 cut(s)	198, 291, 528
DpnII	GATC	3 cut(s)	196, 289, 526
DraIII	CACNNNGTG	1 cut(s)	443
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	106
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	100
Eco24I	GRGCYC	1 cut(s)	563
Eco81I	CCTNAGG	1 cut(s)	372
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	5 cut(s)	271, 322, 388, 517, 661
EcoT14I	CCWWGG	1 cut(s)	100
EcoT38I	GRGCYC	1 cut(s)	563
ErhI	CCWWGG	1 cut(s)	100
FaeI	CATG	4 cut(s)	104, 137, 572, 620
FaqI	GGGAC	2 cut(s)	252, 279
FatI	CATG	4 cut(s)	100, 133, 568, 616
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	1 cut(s)	573
FokI	GGATG	4 cut(s)	20, 310, 501, 599
FriOI	GRGCYC	1 cut(s)	563
Fsp4HI	GCNGC	1 cut(s)	573
FspBI	CTAG	1 cut(s)	249
FspI	TGCGCA	2 cut(s)	209, 216
GlaI	GCGC	3 cut(s)	77, 209, 216
GluI	GCNGC	1 cut(s)	573
GsaI	CCCAGC	1 cut(s)	566
GsuI	CTGGAG	1 cut(s)	540
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	2 cut(s)	108, 370
HgaI	GACGC	1 cut(s)	38
HhaI	GCGC	3 cut(s)	78, 210, 217
Hin1II	CATG	4 cut(s)	104, 137, 572, 620
Hin6I	GCGC	3 cut(s)	76, 208, 215
HinP1I	GCGC	3 cut(s)	76, 208, 215
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	4 cut(s)	176, 492, 506, 626
Hpy166II	GTNNAC	3 cut(s)	319, 365, 437
Hpy188I	TCNGA	2 cut(s)	71, 88
Hpy188III	TCNNGA	1 cut(s)	510
Hpy8I	GTNNAC	3 cut(s)	319, 365, 437
Hpy99I	CGWCG	4 cut(s)	32, 52, 71, 444
HpyCH4III	ACNGT	4 cut(s)	48, 243, 434, 623
HpyCH4IV	ACGT	1 cut(s)	442
HpyCH4V	TGCA	3 cut(s)	572, 595, 646
HpyF10VI	GCNNNNNNNGC	5 cut(s)	207, 214, 572, 578, 587
HpyF3I	CTNAG	1 cut(s)	372
HpySE526I	ACGT	1 cut(s)	442
Hsp92II	CATG	4 cut(s)	104, 137, 572, 620
HspAI	GCGC	3 cut(s)	76, 208, 215
Kzo9I	GATC	3 cut(s)	196, 289, 526
LmnI	GCTCC	2 cut(s)	89, 382
Lsp1109I	GCAGC	1 cut(s)	584
LweI	GCATC	2 cut(s)	85, 577
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	442
MaeIII	GTNAC	1 cut(s)	623
MalI	GATC	3 cut(s)	198, 291, 528
MboI	GATC	3 cut(s)	196, 289, 526
MboII	GAAGA	1 cut(s)	149
MflI	RGATCY	1 cut(s)	526
MhlI	GDGCHC	3 cut(s)	331, 563, 687
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	5 cut(s)	58, 162, 605, 634, 647
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	170, 486, 620
MmeI	TCCRAC	1 cut(s)	49
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	2 cut(s)	183, 638
MslI	CAYNNNNRTG	3 cut(s)	138, 581, 621
Msp20I	TGGCCA	1 cut(s)	108
MspR9I	CCNGG	5 cut(s)	273, 324, 390, 519, 663
MvaI	CCWGG	5 cut(s)	273, 324, 390, 519, 663
MwoI	GCNNNNNNNGC	5 cut(s)	207, 214, 572, 578, 587
NcoI	CCATGG	1 cut(s)	100
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	196, 289, 526
NlaIII	CATG	4 cut(s)	104, 137, 572, 620
NlaIV	GGNNCC	3 cut(s)	330, 378, 686
NmeAIII	GCCGAG	2 cut(s)	13, 144
NmuCI	GTSAC	1 cut(s)	623
NsbI	TGCGCA	2 cut(s)	209, 216
PasI	CCCWGGG	1 cut(s)	323
PfeI	GAWTC	1 cut(s)	506
PflFI	GACNNNGTC	1 cut(s)	629
PfoI	TCCNGGA	1 cut(s)	517
PkrI	GCNGC	1 cut(s)	574
PleI	GAGTC	3 cut(s)	170, 486, 620
PpsI	GAGTC	3 cut(s)	170, 486, 620
PshBI	ATTAAT	1 cut(s)	183
PsiI	TTATAA	1 cut(s)	603
Psp6I	CCWGG	5 cut(s)	271, 322, 388, 517, 661
PspFI	CCCAGC	1 cut(s)	562
PspGI	CCWGG	5 cut(s)	271, 322, 388, 517, 661
PspN4I	GGNNCC	3 cut(s)	330, 378, 686
PsuI	RGATCY	1 cut(s)	526
PsyI	GACNNNGTC	1 cut(s)	629
RsaI	GTAC	4 cut(s)	23, 403, 436, 537
RsaNI	GTAC	4 cut(s)	22, 402, 435, 536
RseI	CAYNNNNRTG	3 cut(s)	138, 581, 621
SaqAI	TTAA	2 cut(s)	183, 638
SatI	GCNGC	1 cut(s)	573
Sau3AI	GATC	3 cut(s)	196, 289, 526
SchI	GAGTC	3 cut(s)	170, 486, 620
ScrFI	CCNGG	5 cut(s)	273, 324, 390, 519, 663
SduI	GDGCHC	3 cut(s)	331, 563, 687
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	85, 577
SmiMI	CAYNNNNRTG	3 cut(s)	138, 581, 621
SmlI	CTYRAG	1 cut(s)	256
SmoI	CTYRAG	1 cut(s)	256
Sse9I	AATT	5 cut(s)	58, 162, 605, 634, 647
SsiI	CCGC	1 cut(s)	5
SspMI	CTAG	1 cut(s)	249
StyD4I	CCNGG	5 cut(s)	271, 322, 388, 517, 661
StyI	CCWWGG	1 cut(s)	100
TaaI	ACNGT	4 cut(s)	48, 243, 434, 623
TaiI	ACGT	1 cut(s)	445
TaqI	TCGA	2 cut(s)	509, 609
TaqII	GACCGA	1 cut(s)	619
TasI	AATT	5 cut(s)	58, 162, 605, 634, 647
TatI	WGTACW	1 cut(s)	434
TfiI	GAWTC	1 cut(s)	506
Tru1I	TTAA	2 cut(s)	183, 638
Tru9I	TTAA	2 cut(s)	183, 638
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	623
TseI	GCWGC	1 cut(s)	572
Tsp45I	GTSAC	1 cut(s)	623
TspDTI	ATGAA	2 cut(s)	71, 150
TspGWI	ACGGA	2 cut(s)	146, 310
TspRI	CASTG	1 cut(s)	217
Tth111I	GACNNNGTC	1 cut(s)	629
VspI	ATTAAT	1 cut(s)	183
XapI	RAATTY	2 cut(s)	58, 605
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.