Rroxscaffold_7G00192260

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0001021
Physical Location & Seq
Forward (+)
33393373 .. 33397975
4603 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00192260.1

Sequence Viewer

Length: 642 bp
ATGCGTAGCTATTTAGCACGGGATGATGATCTTGGTGGTCCTAGGGCTGTAAAGGATACAAAATCAATTGGATCAGCATATGACCGTTATCTTCAAAATGGGAAGCAAGTTTCTTCAGATACCATCGTTGGAGTTGGATTGGGGAGGCCTGTTAGTGGTGGAATGGCTGATCATTCTCTGATTGGTCGCCCTGGGGCTGTTGCTTCGGATTTAATTAGTGGTCGAAATATTAGTCTTGCTCAGCTAACAGTGGATGCAATGCCTAGACTAGCACCTGGACAAGAAACAGCTCCTTTACCCCCAGATGCTACCAACACTTTATACATTGAAGGACTTCCTCCTGACAGCACGAGGAGGGAAGTAGCTCGTATCCTTTATGATGTTTTCATGCTGTATATCTTTCGCCCCTTTGTGGGATATAAAGAAGTGAGGCTTGTGAGCAAAGAGTCCAAACTTCGTGGTGGTGAATCCCTTATCCTTTGTTTTGTGGATTTTGTAAATCCAGCCTGTGCTGCAACTGCCATGAGTGCTTTGCAAGGTTATAAAATGGATGAACACAATCCCGATTCTAACTACTTGCGGCTGCAGTTTTCTCGATTCCCAGGTCCAAGGTCTGGACATGGAACCCGTAGTAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

213

Amino Acids

23.21

Weight (kDa)

9.27

Isoelectric Point (pI)

50.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 543
AccB7I CCANNNNNTGG 1 cut(s) 614
AciI CCGC 1 cut(s) 580
AclWI GGATC 1 cut(s) 79
AcuI CTGAAG 1 cut(s) 99
AfiI CCNNNNNNNGG 4 cut(s) 155, 412, 413, 614
AgsI TTSAA 2 cut(s) 95, 329
AjnI CCWGG 3 cut(s) 190, 274, 601
AluBI AGCT 4 cut(s) 9, 244, 290, 365
AluI AGCT 4 cut(s) 9, 244, 290, 365
AlwI GGATC 1 cut(s) 79
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 2 cut(s) 512, 583
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
Asp700I GAANNNNTTC 1 cut(s) 333
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 2 cut(s) 38, 605
AsuHPI GGTGA 1 cut(s) 476
AvaII GGWCC 2 cut(s) 38, 605
AvrII CCTAGG 1 cut(s) 41
BaeI ACNNNNGTAYC 2 cut(s) 111, 144
BauI CACGAG 1 cut(s) 349
BbvI GCAGC 2 cut(s) 499, 570
BccI CCATC 1 cut(s) 131
BcgI CGANNNNNNTGC 2 cut(s) 575, 609
BciT130I CCWGG 3 cut(s) 192, 276, 603
BciVI GTATCC 2 cut(s) 49, 380
BclI TGATCA 1 cut(s) 169
BfaI CTAG 3 cut(s) 42, 264, 269
BfmI CTRYAG 1 cut(s) 584
BfuI GTATCC 2 cut(s) 49, 380
BisI GCNGC 3 cut(s) 513, 581, 584
BlnI CCTAGG 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 240
BlsI GCNGC 3 cut(s) 514, 582, 585
Bme1390I CCNGG 3 cut(s) 192, 276, 603
Bme18I GGWCC 2 cut(s) 38, 605
BmgT120I GGNCC 2 cut(s) 38, 605
BmiI GGNNCC 1 cut(s) 625
BmrFI CCNGG 3 cut(s) 192, 276, 603
BmsI GCATC 2 cut(s) 244, 295
Bpu1102I GCTNAGC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 5 cut(s) 41, 190, 191, 601, 608
Bsc4I CCNNNNNNNGG 4 cut(s) 155, 412, 413, 614
Bse3DI GCAATG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 3 cut(s) 192, 276, 603
BseDI CCNNGG 5 cut(s) 41, 190, 191, 601, 608
BseGI GGATG 3 cut(s) 28, 259, 556
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 4 cut(s) 155, 412, 413, 614
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 367
BseXI GCAGC 2 cut(s) 499, 570
BshFI GGCC 1 cut(s) 148
BslI CCNNNNNNNGG 4 cut(s) 155, 412, 413, 614
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 3 cut(s) 28, 71, 169
Bsp1720I GCTNAGC 1 cut(s) 240
BspACI CCGC 1 cut(s) 580
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 253
BspLI GGNNCC 1 cut(s) 625
BspMAI CTGCAG 1 cut(s) 588
BspPI GGATC 1 cut(s) 79
BsrDI GCAATG 1 cut(s) 264
BssECI CCNNGG 5 cut(s) 41, 190, 191, 601, 608
BssMI GATC 3 cut(s) 28, 71, 169
BssSI CACGAG 1 cut(s) 349
BssT1I CCWWGG 2 cut(s) 41, 608
Bst2BI CACGAG 1 cut(s) 349
Bst2UI CCWGG 3 cut(s) 192, 276, 603
Bst4CI ACNGT 2 cut(s) 86, 250
BstDEI CTNAG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 28, 259, 556
BstKTI GATC 3 cut(s) 31, 74, 172
BstMBI GATC 3 cut(s) 28, 71, 169
BstMWI GCNNNNNNNGC 3 cut(s) 512, 518, 527
BstNI CCWGG 3 cut(s) 192, 276, 603
BstSCI CCNGG 3 cut(s) 190, 274, 601
BstSFI CTRYAG 1 cut(s) 584
BstV1I GCAGC 2 cut(s) 499, 570
BsuI GTATCC 2 cut(s) 49, 380
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 3 cut(s) 28, 259, 556
BtsIMutI CAGTG 1 cut(s) 255
Cfr13I GGNCC 2 cut(s) 38, 605
CspCI CAANNNNNGTGG 2 cut(s) 439, 474
CviAII CATG 3 cut(s) 388, 523, 620
DdeI CTNAG 1 cut(s) 240
DpnI GATC 3 cut(s) 30, 73, 171
DpnII GATC 3 cut(s) 28, 71, 169
Eco130I CCWWGG 2 cut(s) 41, 608
Eco147I AGGCCT 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 38, 605
Eco57I CTGAAG 1 cut(s) 99
EcoRII CCWGG 3 cut(s) 190, 274, 601
EcoT14I CCWWGG 2 cut(s) 41, 608
ErhI CCWWGG 2 cut(s) 41, 608
FaeI CATG 3 cut(s) 391, 526, 623
FalI AAGNNNNNCTT 2 cut(s) 417, 449
FatI CATG 3 cut(s) 387, 522, 619
FauNDI CATATG 1 cut(s) 79
FbaI TGATCA 1 cut(s) 169
Fnu4HI GCNGC 3 cut(s) 513, 581, 584
FokI GGATG 3 cut(s) 35, 266, 563
Fsp4HI GCNGC 3 cut(s) 513, 581, 584
FspBI CTAG 3 cut(s) 42, 264, 269
GluI GCNGC 3 cut(s) 513, 581, 584
HaeIII GGCC 1 cut(s) 148
Hin1II CATG 3 cut(s) 391, 526, 623
HinfI GANTC 4 cut(s) 446, 467, 566, 597
HphI GGTGA 1 cut(s) 476
Hpy188I TCNGA 3 cut(s) 118, 180, 208
Hpy188III TCNNGA 4 cut(s) 341, 563, 594, 615
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 2 cut(s) 86, 250
HpyCH4V TGCA 4 cut(s) 257, 515, 535, 586
HpyF10VI GCNNNNNNNGC 3 cut(s) 512, 518, 527
HpyF3I CTNAG 1 cut(s) 240
Hsp92II CATG 3 cut(s) 391, 526, 623
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 3 cut(s) 28, 71, 169
LmnI GCTCC 1 cut(s) 295
Lsp1109I GCAGC 2 cut(s) 499, 570
LweI GCATC 2 cut(s) 244, 295
MaeI CTAG 3 cut(s) 42, 264, 269
MalI GATC 3 cut(s) 30, 73, 171
MboI GATC 3 cut(s) 28, 71, 169
MboII GAAGA 2 cut(s) 83, 105
MfeI CAATTG 1 cut(s) 66
MluCI AATT 2 cut(s) 66, 213
MlyI GAGTC 1 cut(s) 455
MmeI TCCRAC 2 cut(s) 109, 115
MnlI CCTC 6 cut(s) 138, 345, 348, 348, 423, 630
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 1 cut(s) 212
MspR9I CCNGG 3 cut(s) 192, 276, 603
MunI CAATTG 1 cut(s) 66
MvaI CCWGG 3 cut(s) 192, 276, 603
MwoI GCNNNNNNNGC 3 cut(s) 512, 518, 527
NdeI CATATG 1 cut(s) 79
NdeII GATC 3 cut(s) 28, 71, 169
NlaIII CATG 3 cut(s) 391, 526, 623
NlaIV GGNNCC 1 cut(s) 625
PasI CCCWGGG 1 cut(s) 191
PceI AGGCCT 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 3 cut(s) 467, 566, 597
PflMI CCANNNNNTGG 1 cut(s) 614
PkrI GCNGC 3 cut(s) 514, 582, 585
PleI GAGTC 1 cut(s) 454
PpsI GAGTC 1 cut(s) 454
PsiI TTATAA 1 cut(s) 543
Psp6I CCWGG 3 cut(s) 190, 274, 601
PspGI CCWGG 3 cut(s) 190, 274, 601
PspN4I GGNNCC 1 cut(s) 625
PspPI GGNCC 2 cut(s) 38, 605
PstI CTGCAG 1 cut(s) 588
SaqAI TTAA 1 cut(s) 212
SatI GCNGC 3 cut(s) 513, 581, 584
Sau3AI GATC 3 cut(s) 28, 71, 169
Sau96I GGNCC 2 cut(s) 38, 605
SchI GAGTC 1 cut(s) 455
ScrFI CCNGG 3 cut(s) 192, 276, 603
SetI ASST 9 cut(s) 11, 246, 277, 292, 367, 541, 607, 614, 641
SfaNI GCATC 2 cut(s) 244, 295
SfcI CTRYAG 1 cut(s) 584
SinI GGWCC 2 cut(s) 38, 605
Sse9I AATT 2 cut(s) 66, 213
SseBI AGGCCT 1 cut(s) 148
SsiI CCGC 1 cut(s) 580
SspI AATATT 1 cut(s) 229
SspMI CTAG 3 cut(s) 42, 264, 269
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 3 cut(s) 190, 274, 601
StyI CCWWGG 2 cut(s) 41, 608
TaaI ACNGT 2 cut(s) 86, 250
TaqI TCGA 2 cut(s) 223, 595
TasI AATT 2 cut(s) 66, 213
TauI GCSGC 1 cut(s) 583
TfiI GAWTC 3 cut(s) 467, 566, 597
Tru1I TTAA 1 cut(s) 212
Tru9I TTAA 1 cut(s) 212
TscAI CASTG 1 cut(s) 255
TseI GCWGC 2 cut(s) 512, 583
TspDTI ATGAA 2 cut(s) 376, 567
TspRI CASTG 1 cut(s) 255
Van91I CCANNNNNTGG 1 cut(s) 614
VpaK11BI GGWCC 2 cut(s) 38, 605
XmaJI CCTAGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 3 cut(s) 42, 264, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.