Prupe.8G024700_v2.0.a1

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp08
OG0001021
Physical Location & Seq
Forward (+)
2241835 .. 2245951
4117 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.8G024700.1

Sequence Viewer

Length: 759 bp
ATGAGGGGCGGCCCCTGGAACCGGCAGCGGCAATTGGGTCCCTCCGGTGGCGTGCATAAACGACCTCGTTCTGACTATGACCTTGCAGCTTCTGGCCTGTATTCAGGTCATGAGATGCATAGTTATTTGGCACGAGATGATGATTTTGGTGATCCTAGGGCCTTAAAGAATACAAAATCAATTGGATCAGAATATGACAACTATCTTCAGAATGTGCAAATGTCTTCACATACTTCTGGAGAAACTAGTACTTTTGGTGGAACTGGATTGGGAAGGGCTGTTGGTGGTGGAATGGTTGGCCTTCCAATGGCTGATCATTCTGTGATGGGTCATCCTGGACCCATTGCTTCTGATCTAATAACAAATGGTCGAAATATGAGTTTTGCTAATCAGCTTCCAGTCGATGCAATGGCTAGGCCTGGACGTGAAACAGCTCATTTACCTCCAGACGCTTCCAACACTTTATATGTTGAAGGACTTCCTCCTGACAGCACAAAGAGAGAAGTAGCTCATATATTTCGTCCTTTTGTGGGCTATAAAGAAGTGAGGCTTGTGAGCAAAGAGTCCAAACATCGTGGTGGGGATCCTCTTATCCTTTGTTTTGTGGACTTTGAAAGTCCAGCCTATGCAGCAACTGCTCTGAGTGCCTTGCAAGGTTATGAAATGGATGAACACAGTCCTGATTCTAATTACTTGCGGCTGCAGTTTTCCCGGTTCCCGGGTCCAAGATCTGGACCTGGATCCCGTAGTAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

253

Amino Acids

27.38

Weight (kDa)

7.92

Isoelectric Point (pI)

50.51

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 731
AciI CCGC 3 cut(s) 9, 28, 697
AclWI GGATC 6 cut(s) 146, 193, 578, 591, 735, 748
AcuI CTGAAG 1 cut(s) 191
AfaI GTAC 1 cut(s) 250
AfiI CCNNNNNNNGG 6 cut(s) 21, 47, 307, 530, 718, 731
AgsI TTSAA 2 cut(s) 473, 614
AhlI ACTAGT 1 cut(s) 245
AjiI CACGTC 1 cut(s) 425
AjnI CCWGG 4 cut(s) 14, 334, 418, 736
AluBI AGCT 4 cut(s) 89, 394, 434, 509
AluI AGCT 4 cut(s) 89, 394, 434, 509
AlwI GGATC 6 cut(s) 146, 193, 578, 591, 735, 748
AlwNI CAGNNNCTG 2 cut(s) 92, 635
Ama87I CYCGRG 1 cut(s) 718
AoxI GGCC 5 cut(s) 10, 94, 159, 298, 416
ApeKI GCWGC 4 cut(s) 25, 86, 629, 700
Asp700I GAANNNNTTC 1 cut(s) 477
AspA2I CCTAGG 1 cut(s) 155
AspS9I GGNCC 6 cut(s) 11, 38, 159, 338, 722, 734
AsuC2I CCSGG 3 cut(s) 712, 719, 720
AsuHPI GGTGA 1 cut(s) 161
AvaI CYCGRG 1 cut(s) 718
AvaII GGWCC 4 cut(s) 38, 338, 722, 734
AvrII CCTAGG 1 cut(s) 155
BamHI GGATCC 2 cut(s) 583, 740
BauI CACGAG 1 cut(s) 132
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 4 cut(s) 37, 98, 641, 687
BccI CCATC 1 cut(s) 319
BciT130I CCWGG 4 cut(s) 16, 336, 420, 738
BclI TGATCA 1 cut(s) 313
BcnI CCSGG 3 cut(s) 712, 719, 720
BcuI ACTAGT 1 cut(s) 245
BfaI CTAG 3 cut(s) 156, 246, 414
BfmI CTRYAG 1 cut(s) 701
BglII AGATCT 1 cut(s) 728
BisI GCNGC 7 cut(s) 10, 26, 29, 87, 630, 698, 701
BlnI CCTAGG 1 cut(s) 155
BlsI GCNGC 7 cut(s) 11, 27, 30, 88, 631, 699, 702
BmcAI AGTACT 1 cut(s) 250
Bme1390I CCNGG 7 cut(s) 16, 336, 420, 712, 719, 720, 738
Bme18I GGWCC 4 cut(s) 38, 338, 722, 734
BmeT110I CYCGRG 1 cut(s) 718
BmgBI CACGTC 1 cut(s) 425
BmgT120I GGNCC 6 cut(s) 11, 38, 159, 338, 722, 734
BmiI GGNNCC 9 cut(s) 13, 20, 39, 40, 340, 585, 716, 723, 742
BmrFI CCNGG 7 cut(s) 16, 336, 420, 712, 719, 720, 738
BmsI GCATC 2 cut(s) 105, 394
BpiI GAAGAC 1 cut(s) 216
BpmI CTGGAG 2 cut(s) 258, 429
BpuMI CCSGG 3 cut(s) 712, 719, 720
BsaJI CCNNGG 3 cut(s) 14, 155, 718
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 6 cut(s) 21, 47, 307, 530, 718, 731
Bse118I RCCGGY 1 cut(s) 21
Bse1I ACTGG 2 cut(s) 268, 398
Bse3DI GCAATG 2 cut(s) 342, 414
BseBI CCWGG 4 cut(s) 16, 336, 420, 738
BseDI CCNNGG 3 cut(s) 14, 155, 718
BseGI GGATG 2 cut(s) 331, 673
BseLI CCNNNNNNNGG 6 cut(s) 21, 47, 307, 530, 718, 731
BseMI GCAATG 2 cut(s) 342, 414
BseMII CTCAG 1 cut(s) 632
BseNI ACTGG 2 cut(s) 268, 398
BseXI GCAGC 4 cut(s) 37, 98, 641, 687
BshFI GGCC 5 cut(s) 12, 96, 161, 300, 418
BsiHKCI CYCGRG 1 cut(s) 718
BsiSI CCGG 4 cut(s) 22, 45, 712, 719
BslFI GGGAC 1 cut(s) 24
BslI CCNNNNNNNGG 6 cut(s) 21, 47, 307, 530, 718, 731
BsmFI GGGAC 1 cut(s) 24
BsnI GGCC 5 cut(s) 12, 96, 161, 300, 418
BsoBI CYCGRG 1 cut(s) 718
Bsp143I GATC 7 cut(s) 151, 185, 313, 352, 583, 728, 740
BspACI CCGC 3 cut(s) 9, 28, 697
BspANI GGCC 5 cut(s) 12, 96, 161, 300, 418
BspCNI CTCAG 1 cut(s) 633
BspHI TCATGA 1 cut(s) 109
BspLI GGNNCC 9 cut(s) 13, 20, 39, 40, 340, 585, 716, 723, 742
BspMAI CTGCAG 1 cut(s) 705
BspPI GGATC 6 cut(s) 146, 193, 578, 591, 735, 748
BsrDI GCAATG 2 cut(s) 342, 414
BsrFI RCCGGY 1 cut(s) 21
BsrI ACTGG 2 cut(s) 268, 398
BssAI RCCGGY 1 cut(s) 21
BssECI CCNNGG 3 cut(s) 14, 155, 718
BssMI GATC 7 cut(s) 151, 185, 313, 352, 583, 728, 740
BssSI CACGAG 1 cut(s) 132
BssT1I CCWWGG 1 cut(s) 155
Bst2BI CACGAG 1 cut(s) 132
Bst2UI CCWGG 4 cut(s) 16, 336, 420, 738
Bst4CI ACNGT 1 cut(s) 677
BstAPI GCANNNNNTGC 1 cut(s) 635
BstC8I GCNNGC 1 cut(s) 53
BstDEI CTNAG 1 cut(s) 641
BstF5I GGATG 2 cut(s) 331, 673
BstKTI GATC 7 cut(s) 154, 188, 316, 355, 586, 731, 743
BstMBI GATC 7 cut(s) 151, 185, 313, 352, 583, 728, 740
BstMWI GCNNNNNNNGC 3 cut(s) 629, 635, 644
BstNI CCWGG 4 cut(s) 16, 336, 420, 738
BstSCI CCNGG 7 cut(s) 14, 334, 418, 710, 717, 718, 736
BstSFI CTRYAG 1 cut(s) 701
BstV1I GCAGC 4 cut(s) 37, 98, 641, 687
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 3 cut(s) 583, 728, 740
BstYI RGATCY 3 cut(s) 583, 728, 740
BsuRI GGCC 5 cut(s) 12, 96, 161, 300, 418
BtrI CACGTC 1 cut(s) 425
BtsCI GGATG 2 cut(s) 331, 673
Cac8I GCNNGC 1 cut(s) 53
CaiI CAGNNNCTG 2 cut(s) 92, 635
CciI TCATGA 1 cut(s) 109
Cfr10I RCCGGY 1 cut(s) 21
Cfr13I GGNCC 6 cut(s) 11, 38, 159, 338, 722, 734
Cfr9I CCCGGG 1 cut(s) 718
CseI GACGC 1 cut(s) 458
Csp6I GTAC 1 cut(s) 249
CspCI CAANNNNNGTGG 2 cut(s) 556, 591
CviAII CATG 1 cut(s) 110
CviQI GTAC 1 cut(s) 249
DdeI CTNAG 1 cut(s) 641
DpnI GATC 7 cut(s) 153, 187, 315, 354, 585, 730, 742
DpnII GATC 7 cut(s) 151, 185, 313, 352, 583, 728, 740
Eco130I CCWWGG 1 cut(s) 155
Eco147I AGGCCT 1 cut(s) 418
Eco47I GGWCC 4 cut(s) 38, 338, 722, 734
Eco57I CTGAAG 1 cut(s) 191
Eco88I CYCGRG 1 cut(s) 718
EcoO109I RGGNCCY 2 cut(s) 38, 159
EcoRII CCWGG 4 cut(s) 14, 334, 418, 736
EcoT14I CCWWGG 1 cut(s) 155
EcoT22I ATGCAT 1 cut(s) 120
ErhI CCWWGG 1 cut(s) 155
FaeI CATG 1 cut(s) 113
FalI AAGNNNNNCTT 2 cut(s) 534, 566
FaqI GGGAC 1 cut(s) 24
FatI CATG 1 cut(s) 109
FbaI TGATCA 1 cut(s) 313
Fnu4HI GCNGC 7 cut(s) 10, 26, 29, 87, 630, 698, 701
FokI GGATG 2 cut(s) 318, 680
Fsp4HI GCNGC 7 cut(s) 10, 26, 29, 87, 630, 698, 701
FspBI CTAG 3 cut(s) 156, 246, 414
GluI GCNGC 7 cut(s) 10, 26, 29, 87, 630, 698, 701
GsuI CTGGAG 2 cut(s) 258, 429
HaeIII GGCC 5 cut(s) 12, 96, 161, 300, 418
HapII CCGG 4 cut(s) 22, 45, 712, 719
HgaI GACGC 1 cut(s) 458
Hin1II CATG 1 cut(s) 113
HinfI GANTC 2 cut(s) 563, 683
HpaII CCGG 4 cut(s) 22, 45, 712, 719
HphI GGTGA 1 cut(s) 161
Hpy166II GTNNAC 1 cut(s) 607
Hpy188I TCNGA 5 cut(s) 73, 190, 210, 352, 642
Hpy188III TCNNGA 6 cut(s) 110, 237, 446, 485, 680, 732
Hpy8I GTNNAC 1 cut(s) 607
HpyAV CCTTC 3 cut(s) 267, 311, 467
HpyCH4III ACNGT 1 cut(s) 677
HpyCH4IV ACGT 1 cut(s) 424
HpyCH4V TGCA 8 cut(s) 55, 86, 118, 217, 407, 629, 652, 703
HpyF10VI GCNNNNNNNGC 3 cut(s) 629, 635, 644
HpyF3I CTNAG 1 cut(s) 641
HpySE526I ACGT 1 cut(s) 424
Hsp92II CATG 1 cut(s) 113
KflI GGGWCCC 1 cut(s) 38
Ksp22I TGATCA 1 cut(s) 313
Kzo9I GATC 7 cut(s) 151, 185, 313, 352, 583, 728, 740
Lsp1109I GCAGC 4 cut(s) 37, 98, 641, 687
LweI GCATC 2 cut(s) 105, 394
MaeI CTAG 3 cut(s) 156, 246, 414
MaeII ACGT 1 cut(s) 424
MalI GATC 7 cut(s) 153, 187, 315, 354, 585, 730, 742
MboI GATC 7 cut(s) 151, 185, 313, 352, 583, 728, 740
MboII GAAGA 2 cut(s) 197, 216
MfeI CAATTG 2 cut(s) 32, 180
MflI RGATCY 3 cut(s) 583, 728, 740
MluCI AATT 3 cut(s) 32, 180, 688
MlyI GAGTC 1 cut(s) 572
MmeI TCCRAC 1 cut(s) 480
MnlI CCTC 7 cut(s) 52, 75, 453, 492, 540, 597, 747
Mph1103I ATGCAT 1 cut(s) 120
MroXI GAANNNNTTC 1 cut(s) 477
MseI TTAA 1 cut(s) 164
MslI CAYNNNNRTG 1 cut(s) 576
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 4 cut(s) 22, 45, 712, 719
MspR9I CCNGG 7 cut(s) 16, 336, 420, 712, 719, 720, 738
MunI CAATTG 2 cut(s) 32, 180
MvaI CCWGG 4 cut(s) 16, 336, 420, 738
MwoI GCNNNNNNNGC 3 cut(s) 629, 635, 644
NciI CCSGG 3 cut(s) 712, 719, 720
NdeII GATC 7 cut(s) 151, 185, 313, 352, 583, 728, 740
NlaIII CATG 1 cut(s) 113
NlaIV GGNNCC 9 cut(s) 13, 20, 39, 40, 340, 585, 716, 723, 742
NsiI ATGCAT 1 cut(s) 120
PagI TCATGA 1 cut(s) 109
PceI AGGCCT 1 cut(s) 418
PdmI GAANNNNTTC 1 cut(s) 477
PfeI GAWTC 1 cut(s) 683
PflMI CCANNNNNTGG 1 cut(s) 731
PfoI TCCNGGA 1 cut(s) 334
PkrI GCNGC 7 cut(s) 11, 27, 30, 88, 631, 699, 702
PleI GAGTC 1 cut(s) 571
PpsI GAGTC 1 cut(s) 571
PpuMI RGGWCCY 1 cut(s) 38
Psp5II RGGWCCY 1 cut(s) 38
Psp6I CCWGG 4 cut(s) 14, 334, 418, 736
PspGI CCWGG 4 cut(s) 14, 334, 418, 736
PspN4I GGNNCC 9 cut(s) 13, 20, 39, 40, 340, 585, 716, 723, 742
PspPI GGNCC 6 cut(s) 11, 38, 159, 338, 722, 734
PspPPI RGGWCCY 1 cut(s) 38
PstI CTGCAG 1 cut(s) 705
PstNI CAGNNNCTG 2 cut(s) 92, 635
PsuI RGATCY 3 cut(s) 583, 728, 740
RsaI GTAC 1 cut(s) 250
RsaNI GTAC 1 cut(s) 249
RseI CAYNNNNRTG 1 cut(s) 576
SaqAI TTAA 1 cut(s) 164
SatI GCNGC 7 cut(s) 10, 26, 29, 87, 630, 698, 701
Sau3AI GATC 7 cut(s) 151, 185, 313, 352, 583, 728, 740
Sau96I GGNCC 6 cut(s) 11, 38, 159, 338, 722, 734
ScaI AGTACT 1 cut(s) 250
SchI GAGTC 1 cut(s) 572
ScrFI CCNGG 7 cut(s) 16, 336, 420, 712, 719, 720, 738
SfaNI GCATC 2 cut(s) 105, 394
SfcI CTRYAG 1 cut(s) 701
SinI GGWCC 4 cut(s) 38, 338, 722, 734
SmaI CCCGGG 1 cut(s) 720
SmiMI CAYNNNNRTG 1 cut(s) 576
SpeI ACTAGT 1 cut(s) 245
Sse9I AATT 3 cut(s) 32, 180, 688
SseBI AGGCCT 1 cut(s) 418
SsiI CCGC 3 cut(s) 9, 28, 697
SspMI CTAG 3 cut(s) 156, 246, 414
StuI AGGCCT 1 cut(s) 418
StyD4I CCNGG 7 cut(s) 14, 334, 418, 710, 717, 718, 736
StyI CCWWGG 1 cut(s) 155
TaaI ACNGT 1 cut(s) 677
TaiI ACGT 1 cut(s) 427
TaqI TCGA 2 cut(s) 370, 402
TasI AATT 3 cut(s) 32, 180, 688
TatI WGTACW 1 cut(s) 248
TauI GCSGC 3 cut(s) 12, 31, 700
TfiI GAWTC 1 cut(s) 683
Tru1I TTAA 1 cut(s) 164
Tru9I TTAA 1 cut(s) 164
TseI GCWGC 4 cut(s) 25, 86, 629, 700
TspDTI ATGAA 2 cut(s) 675, 684
TspMI CCCGGG 1 cut(s) 718
Van91I CCANNNNNTGG 1 cut(s) 731
VpaK11BI GGWCC 4 cut(s) 38, 338, 722, 734
XmaI CCCGGG 1 cut(s) 718
XmaJI CCTAGG 1 cut(s) 155
XmnI GAANNNNTTC 1 cut(s) 477
XspI CTAG 3 cut(s) 156, 246, 414
ZrmI AGTACT 1 cut(s) 250
Zsp2I ATGCAT 1 cut(s) 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.