Rh6CG218800

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0001021
Physical Location & Seq
Reverse (-)
36387047 .. 36390875
3829 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG218800.1

Sequence Viewer

Length: 555 bp
ATGGCGGACAGCCTCTGGAACCGTCAGCGGCAACTGCTTCCTTCCGGTGGCGTTAAACGAACCCGTTCTGACTACGACCTCCCAACGTCTGGTCTGTATTCAGGTCATGAGATGCGTAGCTATTTAGCACGGGATGATGATCTTGGTGGTCCTAGGGCTGTAAAGGATACAAAATCAATTGGATCAGCATATGACCGTTATCTTCAAAATGGGAAGCAAGTGTCTTCAGATACCATGGTTGGAGTTGCATTGACGAGGCCTTTCCCAGTGGATGCAATGCCTAGACTAGCACCTGGACGTGTAACGGCTCCTTTACCCCCAGATGCTACCAACACTTTATACATTGAAGGACTTCCTCCTGACAGCATGAGGAGGGAAGTAGCTCATATTTTTCGCCCCTTTGTGGGATATAAAGAAGTGAGGCTTGTGAGCAAAGAGTCCAAACTTGTTATAAAATGGATGAACACAATCCCGATTCTAACTACTTGCGGCTGCAGTTTTCTCGATTCCCAGGTCCAAGATCTGGACATGGAACCCGTAGTAAGAGATGAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

184

Amino Acids

20.55

Weight (kDa)

7.75

Isoelectric Point (pI)

52.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 452
AccB7I CCANNNNNTGG 2 cut(s) 89, 523
AciI CCGC 3 cut(s) 5, 28, 489
AclWI GGATC 1 cut(s) 190
AcuI CTGAAG 1 cut(s) 210
AfiI CCNNNNNNNGG 5 cut(s) 47, 89, 403, 404, 523
AflIII ACRYGT 1 cut(s) 298
AgsI TTSAA 2 cut(s) 206, 347
AjiI CACGTC 1 cut(s) 299
AjnI CCWGG 2 cut(s) 292, 510
AluBI AGCT 2 cut(s) 120, 383
AluI AGCT 2 cut(s) 120, 383
AlwI GGATC 1 cut(s) 190
AlwNI CAGNNNCTG 1 cut(s) 15
AoxI GGCC 1 cut(s) 257
ApeKI GCWGC 1 cut(s) 492
Asp700I GAANNNNTTC 2 cut(s) 64, 351
AspA2I CCTAGG 1 cut(s) 152
AspS9I GGNCC 2 cut(s) 149, 514
AvaII GGWCC 2 cut(s) 149, 514
AvrII CCTAGG 1 cut(s) 152
BaeI ACNNNNGTAYC 2 cut(s) 222, 255
BbsI GAAGAC 1 cut(s) 216
BbvI GCAGC 1 cut(s) 479
BceAI ACGGC 1 cut(s) 321
BcgI CGANNNNNNTGC 2 cut(s) 484, 518
BciT130I CCWGG 2 cut(s) 294, 512
BciVI GTATCC 1 cut(s) 160
BfaI CTAG 3 cut(s) 153, 282, 287
BfmI CTRYAG 1 cut(s) 493
BfuI GTATCC 1 cut(s) 160
BglII AGATCT 1 cut(s) 520
BisI GCNGC 3 cut(s) 29, 490, 493
BlnI CCTAGG 1 cut(s) 152
BlsI GCNGC 3 cut(s) 30, 491, 494
Bme1390I CCNGG 2 cut(s) 294, 512
Bme18I GGWCC 2 cut(s) 149, 514
BmgBI CACGTC 1 cut(s) 299
BmgT120I GGNCC 2 cut(s) 149, 514
BmiI GGNNCC 3 cut(s) 20, 309, 534
BmrFI CCNGG 2 cut(s) 294, 512
BmrI ACTGGG 1 cut(s) 260
BmsI GCATC 3 cut(s) 102, 262, 313
BmuI ACTGGG 1 cut(s) 260
BpiI GAAGAC 1 cut(s) 216
BsaBI GATNNNNATC 1 cut(s) 138
BsaJI CCNNGG 3 cut(s) 152, 234, 510
BsaWI WCCGGW 1 cut(s) 44
Bsc4I CCNNNNNNNGG 5 cut(s) 47, 89, 403, 404, 523
Bse1I ACTGG 1 cut(s) 266
Bse3DI GCAATG 1 cut(s) 282
Bse8I GATNNNNATC 1 cut(s) 138
BseBI CCWGG 2 cut(s) 294, 512
BseDI CCNNGG 3 cut(s) 152, 234, 510
BseGI GGATG 3 cut(s) 139, 277, 465
BseJI GATNNNNATC 1 cut(s) 138
BseLI CCNNNNNNNGG 5 cut(s) 47, 89, 403, 404, 523
BseMI GCAATG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 266
BseRI GAGGAG 1 cut(s) 385
BseXI GCAGC 1 cut(s) 479
BshFI GGCC 1 cut(s) 259
BsiSI CCGG 1 cut(s) 45
BslI CCNNNNNNNGG 5 cut(s) 47, 89, 403, 404, 523
BsnI GGCC 1 cut(s) 259
Bsp143I GATC 3 cut(s) 139, 182, 520
Bsp19I CCATGG 1 cut(s) 234
BspACI CCGC 3 cut(s) 5, 28, 489
BspANI GGCC 1 cut(s) 259
BspHI TCATGA 1 cut(s) 106
BspLI GGNNCC 3 cut(s) 20, 309, 534
BspMAI CTGCAG 1 cut(s) 497
BspPI GGATC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 282
BsrI ACTGG 1 cut(s) 266
BssECI CCNNGG 3 cut(s) 152, 234, 510
BssMI GATC 3 cut(s) 139, 182, 520
BssT1I CCWWGG 2 cut(s) 152, 234
Bst2UI CCWGG 2 cut(s) 294, 512
Bst4CI ACNGT 2 cut(s) 23, 197
BstDSI CCRYGG 1 cut(s) 234
BstF5I GGATG 3 cut(s) 139, 277, 465
BstKTI GATC 3 cut(s) 142, 185, 523
BstMBI GATC 3 cut(s) 139, 182, 520
BstMWI GCNNNNNNNGC 1 cut(s) 34
BstNI CCWGG 2 cut(s) 294, 512
BstSCI CCNGG 2 cut(s) 292, 510
BstSFI CTRYAG 1 cut(s) 493
BstV1I GCAGC 1 cut(s) 479
BstV2I GAAGAC 1 cut(s) 216
BstX2I RGATCY 1 cut(s) 520
BstYI RGATCY 1 cut(s) 520
BsuI GTATCC 1 cut(s) 160
BsuRI GGCC 1 cut(s) 259
BtgI CCRYGG 1 cut(s) 234
BtrI CACGTC 1 cut(s) 299
BtsCI GGATG 3 cut(s) 139, 277, 465
BtsIMutI CAGTG 1 cut(s) 273
CaiI CAGNNNCTG 1 cut(s) 15
CciI TCATGA 1 cut(s) 106
Cfr13I GGNCC 2 cut(s) 149, 514
CviAII CATG 4 cut(s) 107, 235, 367, 529
CviJI RGCY 8 cut(s) 12, 120, 158, 259, 308, 383, 424, 492
CviKI_1 RGCY 8 cut(s) 12, 120, 158, 259, 308, 383, 424, 492
DpnI GATC 3 cut(s) 141, 184, 522
DpnII GATC 3 cut(s) 139, 182, 520
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 152, 234
Eco147I AGGCCT 1 cut(s) 259
Eco47I GGWCC 2 cut(s) 149, 514
Eco57I CTGAAG 1 cut(s) 210
EcoRII CCWGG 2 cut(s) 292, 510
EcoT14I CCWWGG 2 cut(s) 152, 234
ErhI CCWWGG 2 cut(s) 152, 234
FaeI CATG 4 cut(s) 110, 238, 370, 532
FalI AAGNNNNNCTT 2 cut(s) 408, 440
FatI CATG 4 cut(s) 106, 234, 366, 528
FauNDI CATATG 1 cut(s) 190
Fnu4HI GCNGC 3 cut(s) 29, 490, 493
FokI GGATG 3 cut(s) 146, 284, 472
Fsp4HI GCNGC 3 cut(s) 29, 490, 493
FspBI CTAG 3 cut(s) 153, 282, 287
GluI GCNGC 3 cut(s) 29, 490, 493
HaeIII GGCC 1 cut(s) 259
HapII CCGG 1 cut(s) 45
Hin1II CATG 4 cut(s) 110, 238, 370, 532
HinfI GANTC 3 cut(s) 437, 475, 506
HpaII CCGG 1 cut(s) 45
Hpy188I TCNGA 2 cut(s) 70, 229
Hpy188III TCNNGA 6 cut(s) 16, 107, 359, 472, 503, 524
HpyAV CCTTC 2 cut(s) 51, 341
HpyCH4III ACNGT 2 cut(s) 23, 197
HpyCH4IV ACGT 2 cut(s) 86, 298
HpyCH4V TGCA 3 cut(s) 248, 275, 495
HpyF10VI GCNNNNNNNGC 1 cut(s) 34
HpySE526I ACGT 2 cut(s) 86, 298
Hsp92II CATG 4 cut(s) 110, 238, 370, 532
Kzo9I GATC 3 cut(s) 139, 182, 520
LmnI GCTCC 1 cut(s) 313
Lsp1109I GCAGC 1 cut(s) 479
LweI GCATC 3 cut(s) 102, 262, 313
MaeI CTAG 3 cut(s) 153, 282, 287
MaeII ACGT 2 cut(s) 86, 298
MaeIII GTNAC 1 cut(s) 301
MalI GATC 3 cut(s) 141, 184, 522
MboI GATC 3 cut(s) 139, 182, 520
MboII GAAGA 2 cut(s) 194, 216
MfeI CAATTG 1 cut(s) 177
MflI RGATCY 1 cut(s) 520
MluCI AATT 1 cut(s) 177
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 1 cut(s) 220
MnlI CCTC 7 cut(s) 23, 89, 249, 363, 366, 366, 414
MroXI GAANNNNTTC 2 cut(s) 64, 351
MseI TTAA 1 cut(s) 54
MspA1I CMGCKG 1 cut(s) 28
MspI CCGG 1 cut(s) 45
MspR9I CCNGG 2 cut(s) 294, 512
MunI CAATTG 1 cut(s) 177
MvaI CCWGG 2 cut(s) 294, 512
MwoI GCNNNNNNNGC 1 cut(s) 34
NcoI CCATGG 1 cut(s) 234
NdeI CATATG 1 cut(s) 190
NdeII GATC 3 cut(s) 139, 182, 520
NlaIII CATG 4 cut(s) 110, 238, 370, 532
NlaIV GGNNCC 3 cut(s) 20, 309, 534
PagI TCATGA 1 cut(s) 106
PceI AGGCCT 1 cut(s) 259
PdmI GAANNNNTTC 2 cut(s) 64, 351
PfeI GAWTC 2 cut(s) 475, 506
PflMI CCANNNNNTGG 2 cut(s) 89, 523
PkrI GCNGC 3 cut(s) 30, 491, 494
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PsiI TTATAA 1 cut(s) 452
Psp6I CCWGG 2 cut(s) 292, 510
PspGI CCWGG 2 cut(s) 292, 510
PspN4I GGNNCC 3 cut(s) 20, 309, 534
PspPI GGNCC 2 cut(s) 149, 514
PstI CTGCAG 1 cut(s) 497
PstNI CAGNNNCTG 1 cut(s) 15
PsuI RGATCY 1 cut(s) 520
SaqAI TTAA 1 cut(s) 54
SatI GCNGC 3 cut(s) 29, 490, 493
Sau3AI GATC 3 cut(s) 139, 182, 520
Sau96I GGNCC 2 cut(s) 149, 514
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 2 cut(s) 294, 512
SetI ASST 8 cut(s) 81, 89, 106, 122, 295, 301, 385, 516
SfaNI GCATC 3 cut(s) 102, 262, 313
SfcI CTRYAG 1 cut(s) 493
SinI GGWCC 2 cut(s) 149, 514
Sse9I AATT 1 cut(s) 177
SseBI AGGCCT 1 cut(s) 259
SsiI CCGC 3 cut(s) 5, 28, 489
SspMI CTAG 3 cut(s) 153, 282, 287
StuI AGGCCT 1 cut(s) 259
StyD4I CCNGG 2 cut(s) 292, 510
StyI CCWWGG 2 cut(s) 152, 234
TaaI ACNGT 2 cut(s) 23, 197
TaiI ACGT 2 cut(s) 89, 301
TaqI TCGA 1 cut(s) 504
TasI AATT 1 cut(s) 177
TauI GCSGC 2 cut(s) 31, 492
TfiI GAWTC 2 cut(s) 475, 506
Tru1I TTAA 1 cut(s) 54
Tru9I TTAA 1 cut(s) 54
TscAI CASTG 1 cut(s) 273
TseI GCWGC 1 cut(s) 492
TspDTI ATGAA 1 cut(s) 476
TspRI CASTG 1 cut(s) 273
Van91I CCANNNNNTGG 2 cut(s) 89, 523
VpaK11BI GGWCC 2 cut(s) 149, 514
XmaJI CCTAGG 1 cut(s) 152
XmnI GAANNNNTTC 2 cut(s) 64, 351
XspI CTAG 3 cut(s) 153, 282, 287
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.