Rh6BG216100

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0001021
Physical Location & Seq
Reverse (-)
40820271 .. 40824754
4484 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG216100.1

Sequence Viewer

Length: 525 bp
ATGCGTAGCTATTTAGCACGGGATGATGATCTTGGTGGTCCTAGGGCTGTAAAGGATACAAAATCAATTGGATCAGCTTATGACCGTTATCTTCAAAATGGGAAGCAAGTGTCTTCAGATACCATGGTTGGAGTTGCATTGGGGAGGCCTGTCAGTGGTGGAATGGCTGATCATTCTATGATTGGTCGCCCTGGGGCTGTTGCTTCGGATTTAATTAGTGGTCGAAATATTAGTCTTGCTCAGCTCGCAGTGGATGCAATGCCTAGACTAGCACCTGGACGTGCAACAGCTCCTTTACCCCCAGATGCTACCAACACTTTATACATTGAAGGACTTCCTCCTGACAGCACGAGGAGGGAAGTAGCTCGTATCCTTTATGATGTTTTCACGCTGTGTGAGAATTGTAGGGATCTTTCTTTTCCCCATCTTATTGTTTTAACTCAATGGTTCTGTAAAAAAATCTCTCACTTGATTCTTTATCCTTTACATCGTGTTAGATATTTTTCGCCCCTTTGTGGGATATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

174

Amino Acids

19.03

Weight (kDa)

8.98

Isoelectric Point (pI)

37.97

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 79, 417
AcuI CTGAAG 1 cut(s) 99
AdeI CACNNNGTG 1 cut(s) 393
AfiI CCNNNNNNNGG 3 cut(s) 155, 515, 516
AgsI TTSAA 2 cut(s) 95, 329
AjiI CACGTC 1 cut(s) 281
AjnI CCWGG 2 cut(s) 190, 274
AluBI AGCT 5 cut(s) 9, 77, 244, 290, 365
AluI AGCT 5 cut(s) 9, 77, 244, 290, 365
AlwI GGATC 2 cut(s) 79, 417
AoxI GGCC 1 cut(s) 146
ArsI GACNNNNNNTTYG 2 cut(s) 217, 249
Asp700I GAANNNNTTC 1 cut(s) 333
AspA2I CCTAGG 1 cut(s) 41
AspS9I GGNCC 1 cut(s) 38
AvaII GGWCC 1 cut(s) 38
AvrII CCTAGG 1 cut(s) 41
BaeI ACNNNNGTAYC 2 cut(s) 111, 144
BauI CACGAG 1 cut(s) 349
BbsI GAAGAC 1 cut(s) 105
BccI CCATC 1 cut(s) 432
BciT130I CCWGG 2 cut(s) 192, 276
BciVI GTATCC 2 cut(s) 49, 380
BclI TGATCA 1 cut(s) 169
BfaI CTAG 3 cut(s) 42, 264, 269
BfuI GTATCC 2 cut(s) 49, 380
BlnI CCTAGG 1 cut(s) 41
BlpI GCTNAGC 1 cut(s) 240
Bme1390I CCNGG 2 cut(s) 192, 276
Bme18I GGWCC 1 cut(s) 38
BmgBI CACGTC 1 cut(s) 281
BmgT120I GGNCC 1 cut(s) 38
BmrFI CCNGG 2 cut(s) 192, 276
BmsI GCATC 2 cut(s) 244, 295
BpiI GAAGAC 1 cut(s) 105
Bpu1102I GCTNAGC 1 cut(s) 240
BsaBI GATNNNNATC 1 cut(s) 27
BsaJI CCNNGG 4 cut(s) 41, 123, 190, 191
Bsc4I CCNNNNNNNGG 3 cut(s) 155, 515, 516
Bse3DI GCAATG 1 cut(s) 264
Bse8I GATNNNNATC 1 cut(s) 27
BseBI CCWGG 2 cut(s) 192, 276
BseDI CCNNGG 4 cut(s) 41, 123, 190, 191
BseGI GGATG 2 cut(s) 28, 259
BseJI GATNNNNATC 1 cut(s) 27
BseLI CCNNNNNNNGG 3 cut(s) 155, 515, 516
BseMI GCAATG 1 cut(s) 264
BseMII CTCAG 1 cut(s) 254
BseRI GAGGAG 1 cut(s) 367
BshFI GGCC 1 cut(s) 148
BslI CCNNNNNNNGG 3 cut(s) 155, 515, 516
BsnI GGCC 1 cut(s) 148
Bsp143I GATC 4 cut(s) 28, 71, 169, 409
Bsp1720I GCTNAGC 1 cut(s) 240
Bsp19I CCATGG 1 cut(s) 123
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 1 cut(s) 253
BspPI GGATC 2 cut(s) 79, 417
BsrDI GCAATG 1 cut(s) 264
BssECI CCNNGG 4 cut(s) 41, 123, 190, 191
BssMI GATC 4 cut(s) 28, 71, 169, 409
BssSI CACGAG 1 cut(s) 349
BssT1I CCWWGG 2 cut(s) 41, 123
Bst2BI CACGAG 1 cut(s) 349
Bst2UI CCWGG 2 cut(s) 192, 276
Bst4CI ACNGT 1 cut(s) 86
BstAPI GCANNNNNTGC 1 cut(s) 254
BstC8I GCNNGC 1 cut(s) 246
BstDEI CTNAG 1 cut(s) 240
BstDSI CCRYGG 1 cut(s) 123
BstF5I GGATG 2 cut(s) 28, 259
BstKTI GATC 4 cut(s) 31, 74, 172, 412
BstMBI GATC 4 cut(s) 28, 71, 169, 409
BstMWI GCNNNNNNNGC 2 cut(s) 245, 254
BstNI CCWGG 2 cut(s) 192, 276
BstSCI CCNGG 2 cut(s) 190, 274
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 1 cut(s) 409
BstYI RGATCY 1 cut(s) 409
BsuI GTATCC 2 cut(s) 49, 380
BsuRI GGCC 1 cut(s) 148
BtgI CCRYGG 1 cut(s) 123
BtrI CACGTC 1 cut(s) 281
BtsCI GGATG 2 cut(s) 28, 259
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 2 cut(s) 160, 255
Cac8I GCNNGC 1 cut(s) 246
Cfr13I GGNCC 1 cut(s) 38
CviAII CATG 1 cut(s) 124
CviJI RGCY 9 cut(s) 9, 47, 77, 148, 167, 197, 244, 290, 365
CviKI_1 RGCY 9 cut(s) 9, 47, 77, 148, 167, 197, 244, 290, 365
DdeI CTNAG 1 cut(s) 240
DpnI GATC 4 cut(s) 30, 73, 171, 411
DpnII GATC 4 cut(s) 28, 71, 169, 409
DraIII CACNNNGTG 1 cut(s) 393
Eco130I CCWWGG 2 cut(s) 41, 123
Eco147I AGGCCT 1 cut(s) 148
Eco47I GGWCC 1 cut(s) 38
Eco57I CTGAAG 1 cut(s) 99
EcoRII CCWGG 2 cut(s) 190, 274
EcoT14I CCWWGG 2 cut(s) 41, 123
ErhI CCWWGG 2 cut(s) 41, 123
FaeI CATG 1 cut(s) 127
FaiI YATR 6 cut(s) 81, 125, 179, 322, 378, 523
FatI CATG 1 cut(s) 123
FbaI TGATCA 1 cut(s) 169
FokI GGATG 2 cut(s) 35, 266
FspBI CTAG 3 cut(s) 42, 264, 269
HaeIII GGCC 1 cut(s) 148
Hin1II CATG 1 cut(s) 127
HinfI GANTC 1 cut(s) 472
Hpy188I TCNGA 2 cut(s) 118, 208
Hpy188III TCNNGA 1 cut(s) 341
HpyAV CCTTC 1 cut(s) 323
HpyCH4III ACNGT 1 cut(s) 86
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 3 cut(s) 137, 257, 284
HpyF10VI GCNNNNNNNGC 2 cut(s) 245, 254
HpyF3I CTNAG 1 cut(s) 240
HpySE526I ACGT 1 cut(s) 280
Hsp92II CATG 1 cut(s) 127
Ksp22I TGATCA 1 cut(s) 169
Kzo9I GATC 4 cut(s) 28, 71, 169, 409
LmnI GCTCC 1 cut(s) 295
LpnPI CCDG 7 cut(s) 162, 177, 204, 261, 288, 315, 354
LweI GCATC 2 cut(s) 244, 295
MaeI CTAG 3 cut(s) 42, 264, 269
MaeII ACGT 1 cut(s) 280
MalI GATC 4 cut(s) 30, 73, 171, 411
MboI GATC 4 cut(s) 28, 71, 169, 409
MboII GAAGA 2 cut(s) 83, 105
MfeI CAATTG 1 cut(s) 66
MflI RGATCY 1 cut(s) 409
MluCI AATT 3 cut(s) 66, 213, 400
MmeI TCCRAC 1 cut(s) 109
MnlI CCTC 4 cut(s) 138, 345, 348, 348
MroXI GAANNNNTTC 1 cut(s) 333
MseI TTAA 2 cut(s) 212, 437
MspR9I CCNGG 2 cut(s) 192, 276
MunI CAATTG 1 cut(s) 66
MvaI CCWGG 2 cut(s) 192, 276
MwoI GCNNNNNNNGC 2 cut(s) 245, 254
NcoI CCATGG 1 cut(s) 123
NdeII GATC 4 cut(s) 28, 71, 169, 409
NlaIII CATG 1 cut(s) 127
PasI CCCWGGG 1 cut(s) 191
PceI AGGCCT 1 cut(s) 148
PdmI GAANNNNTTC 1 cut(s) 333
PfeI GAWTC 1 cut(s) 472
Psp6I CCWGG 2 cut(s) 190, 274
PspGI CCWGG 2 cut(s) 190, 274
PspPI GGNCC 1 cut(s) 38
PsuI RGATCY 1 cut(s) 409
SaqAI TTAA 2 cut(s) 212, 437
Sau3AI GATC 4 cut(s) 28, 71, 169, 409
Sau96I GGNCC 1 cut(s) 38
ScrFI CCNGG 2 cut(s) 192, 276
SetI ASST 7 cut(s) 11, 79, 246, 277, 283, 292, 367
SfaNI GCATC 2 cut(s) 244, 295
SinI GGWCC 1 cut(s) 38
Sse9I AATT 3 cut(s) 66, 213, 400
SseBI AGGCCT 1 cut(s) 148
SspI AATATT 1 cut(s) 229
SspMI CTAG 3 cut(s) 42, 264, 269
StuI AGGCCT 1 cut(s) 148
StyD4I CCNGG 2 cut(s) 190, 274
StyI CCWWGG 2 cut(s) 41, 123
TaaI ACNGT 1 cut(s) 86
TaiI ACGT 1 cut(s) 283
TaqI TCGA 1 cut(s) 223
TasI AATT 3 cut(s) 66, 213, 400
TfiI GAWTC 1 cut(s) 472
Tru1I TTAA 2 cut(s) 212, 437
Tru9I TTAA 2 cut(s) 212, 437
TscAI CASTG 2 cut(s) 160, 255
TspRI CASTG 2 cut(s) 160, 255
VpaK11BI GGWCC 1 cut(s) 38
XmaJI CCTAGG 1 cut(s) 41
XmnI GAANNNNTTC 1 cut(s) 333
XspI CTAG 3 cut(s) 42, 264, 269
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.