Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001021

Physical Location & Seq

Genomic Coordinates Forward (+)

23190599 .. 23194661

Gene Structure 4063 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g32221.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 693 bp

ATGGCCGACGCTTACTGGAGGTACAGCGACGGACGGCAGCCGCCGCCGTCGGGGATGAATTCCGGCATGGGAAAGCGTCCGCGTCCAGATTACGATTCCCATAGTGGCCATGACCTGCCTAGTTATTATCCCCACGAAGATGATAGAGGTTCACTCCGTGGGATGAGAGATACAGACTCCATTAACGCATCATATGATCGCTACCTTCGTTCTGCGCAAATGTCATCTTATAGTGGGGGACAGTCTGCTAGAAACATGAGCGGGGGACTACCTGGTCGTTCTGTTGATGACCCACGAATGATGGGAATGGTTGAACCCGGGCCTGTAAAAGAGAGGGTCTTGGGAATGGGAGGTGGGAGGCCTGAGGTTCCTCTTCCTCCTGGTGCGACGAGTACACTTTTTGTGGAAGGATTGCCTGCCAATTGTACGCGACGTGAAGTAGCTCACATCTTTCGCCCATTTGTTGGTTACAAAGAAGTGAGACTTGTAAGCAAGGAGTCAAGACATCCTGGAGGTGAACCTTTGGTACTTTGTTTTGTTGATTTTATGAGCCCTGCCCATGCAGCCACGGCTATGGATGCCTTGCAAGGTTATACGTTCGATGAGCATGACCGTGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTATCCTGGTGCGAGGTCAGGTGGTGGGCACCGAGGGAAGCGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

231

Amino Acids

25.29

Weight (kDa)

8.88

Isoelectric Point (pI)

62.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	133 - 203	2.2e-10	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21326 AT1G76940 AT1G76940 AT1G76940
fragaria_vesca	FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_7g32221 FvH4_7g32221
malus_domestica	MD01G1224900.v1.1 MD05G1020700.v1.1 MD07G1295500.v1.1 MD10G1021500.v1.1 MD10G1021600.v1.1
prunus_persica	Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1
pyrus_communis	pycom01g23350 pycom05g01200 pycom07g26810 pycom10g01470 pycom10g01480
rosa_chinensis	RchiOBHm_Chr1g0381871 RchiOBHm_Chr6g0276391
rosa_laevigata	RLG00000013397 RLG00000026202
rosa_multiflora	Rmu_sc0004126.1_g000019 Rmu_sc0004248.1_g000007 Rmu_sc0010238.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278360 Rroxscaffold_7G00192260
rosa_rugosa	Rorug01G0432000 Rorug06G0101200
rosa_samantha	Rh1AG455100 Rh1BG412300 Rh1CG427000 Rh1DG444600 Rh6AG211900 Rh6BG216100 Rh6CG218400 Rh6CG218800 Rh6DG208300
rosa_wichuraiana	Rw1G041390 Rw1G041460 Rw6G018500 Rw6G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
Acc16I	TGCGCA	1 cut(s)	216
Acc36I	ACCTGC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	675
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	2 cut(s)	82, 430
AciI	CCGC	4 cut(s)	41, 44, 80, 261
AcoI	YGGCCR	2 cut(s)	3, 106
AcsI	RAATTY	1 cut(s)	58
AdeI	CACNNNGTG	1 cut(s)	158
AfaI	GTAC	4 cut(s)	23, 394, 427, 528
AfiI	CCNNNNNNNGG	3 cut(s)	50, 464, 619
AgsI	TTSAA	1 cut(s)	314
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	4 cut(s)	271, 379, 508, 652
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
Alw26I	GTCTC	1 cut(s)	475
Ama87I	CYCGRG	1 cut(s)	317
AoxI	GGCC	4 cut(s)	3, 106, 320, 359
ApeKI	GCWGC	2 cut(s)	37, 563
ApoI	RAATTY	1 cut(s)	58
AspLEI	GCGC	1 cut(s)	217
AspS9I	GGNCC	1 cut(s)	320
AsuC2I	CCSGG	2 cut(s)	318, 319
AsuHPI	GGTGA	1 cut(s)	527
AvaI	CYCGRG	1 cut(s)	317
AxyI	CCTNAGG	1 cut(s)	363
BaeGI	GKGCMC	1 cut(s)	678
BalI	TGGCCA	1 cut(s)	108
BanI	GGYRCC	1 cut(s)	675
BanII	GRGCYC	1 cut(s)	554
BbvI	GCAGC	2 cut(s)	49, 575
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	3 cut(s)	31, 50, 585
BcgI	CGANNNNNNTGC	2 cut(s)	626, 660
BciT130I	CCWGG	4 cut(s)	273, 381, 510, 654
BcnI	CCSGG	2 cut(s)	318, 319
BcoDI	GTCTC	1 cut(s)	475
BfaI	CTAG	2 cut(s)	120, 249
BfuAI	ACCTGC	1 cut(s)	123
BisI	GCNGC	4 cut(s)	38, 41, 44, 564
BlsI	GCNGC	4 cut(s)	39, 42, 45, 565
Bme1390I	CCNGG	6 cut(s)	273, 318, 319, 381, 510, 654
BmeT110I	CYCGRG	1 cut(s)	317
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	2 cut(s)	369, 677
BmrFI	CCNGG	6 cut(s)	273, 318, 319, 381, 510, 654
BmsI	GCATC	2 cut(s)	197, 568
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BpmI	CTGGAG	2 cut(s)	37, 531
BpuMI	CCSGG	2 cut(s)	318, 319
BsaJI	CCNNGG	4 cut(s)	157, 317, 567, 679
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 464, 619
Bse1I	ACTGG	1 cut(s)	20
Bse21I	CCTNAGG	1 cut(s)	363
BseBI	CCWGG	4 cut(s)	273, 381, 510, 654
BseDI	CCNNGG	4 cut(s)	157, 317, 567, 679
BseGI	GGATG	4 cut(s)	60, 168, 505, 583
BseLI	CCNNNNNNNGG	3 cut(s)	50, 464, 619
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	20
BseSI	GKGCMC	1 cut(s)	678
BseXI	GCAGC	2 cut(s)	49, 575
Bsh1236I	CGCG	2 cut(s)	82, 430
BshFI	GGCC	4 cut(s)	5, 108, 322, 361
BshNI	GGYRCC	1 cut(s)	675
BsiHKCI	CYCGRG	1 cut(s)	317
BsiSI	CCGG	2 cut(s)	63, 318
BslFI	GGGAC	2 cut(s)	252, 279
BslI	CCNNNNNNNGG	3 cut(s)	50, 464, 619
BsmAI	GTCTC	1 cut(s)	475
BsmFI	GGGAC	2 cut(s)	252, 279
BsnI	GGCC	4 cut(s)	5, 108, 322, 361
BsoBI	CYCGRG	1 cut(s)	317
Bsp1286I	GDGCHC	2 cut(s)	554, 678
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	4 cut(s)	41, 44, 80, 261
BspANI	GGCC	4 cut(s)	5, 108, 322, 361
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	2 cut(s)	82, 430
BspLI	GGNNCC	2 cut(s)	369, 677
BspMI	ACCTGC	1 cut(s)	123
BspT107I	GGYRCC	1 cut(s)	675
BsrBI	CCGCTC	1 cut(s)	261
BsrI	ACTGG	1 cut(s)	20
BssECI	CCNNGG	4 cut(s)	157, 317, 567, 679
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	4 cut(s)	273, 381, 510, 654
Bst4CI	ACNGT	2 cut(s)	243, 614
Bst6I	CTCTTC	1 cut(s)	378
BstC8I	GCNNGC	2 cut(s)	417, 646
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	2 cut(s)	157, 567
BstF5I	GGATG	4 cut(s)	60, 168, 505, 583
BstFNI	CGCG	2 cut(s)	82, 430
BstHHI	GCGC	1 cut(s)	217
BstKTI	GATC	1 cut(s)	199
BstMAI	GTCTC	1 cut(s)	475
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	4 cut(s)	43, 563, 569, 578
BstNI	CCWGG	4 cut(s)	273, 381, 510, 654
BstSCI	CCNGG	6 cut(s)	271, 316, 317, 379, 508, 652
BstSLI	GKGCMC	1 cut(s)	678
BstUI	CGCG	2 cut(s)	82, 430
BstV1I	GCAGC	2 cut(s)	49, 575
BstXI	CCANNNNNNTGG	1 cut(s)	574
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	4 cut(s)	5, 108, 322, 361
BtgI	CCRYGG	2 cut(s)	157, 567
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	4 cut(s)	60, 168, 505, 583
BveI	ACCTGC	1 cut(s)	123
Cac8I	GCNNGC	2 cut(s)	417, 646
CfoI	GCGC	1 cut(s)	217
Cfr13I	GGNCC	1 cut(s)	320
Cfr9I	CCCGGG	1 cut(s)	317
CseI	GACGC	3 cut(s)	17, 65, 71
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	4 cut(s)	22, 393, 426, 527
CviAII	CATG	5 cut(s)	67, 110, 256, 560, 608
CviJI	RGCY	9 cut(s)	5, 40, 108, 322, 361, 443, 552, 566, 572
CviKI_1	RGCY	9 cut(s)	5, 40, 108, 322, 361, 443, 552, 566, 572
CviQI	GTAC	4 cut(s)	22, 393, 426, 527
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DraIII	CACNNNGTG	1 cut(s)	158
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
EaeI	YGGCCR	2 cut(s)	3, 106
Eam1104I	CTCTTC	1 cut(s)	378
EarI	CTCTTC	1 cut(s)	378
Eco147I	AGGCCT	1 cut(s)	361
Eco24I	GRGCYC	1 cut(s)	554
Eco81I	CCTNAGG	1 cut(s)	363
Eco88I	CYCGRG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	4 cut(s)	271, 379, 508, 652
EcoT38I	GRGCYC	1 cut(s)	554
FaeI	CATG	5 cut(s)	70, 113, 259, 563, 611
FalI	AAGNNNNNCTT	2 cut(s)	468, 500
FaqI	GGGAC	2 cut(s)	252, 279
FatI	CATG	5 cut(s)	66, 109, 255, 559, 607
FauI	CCCGC	1 cut(s)	254
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	4 cut(s)	38, 41, 44, 564
FokI	GGATG	4 cut(s)	67, 175, 492, 590
FriOI	GRGCYC	1 cut(s)	554
Fsp4HI	GCNGC	4 cut(s)	38, 41, 44, 564
FspBI	CTAG	2 cut(s)	120, 249
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	1 cut(s)	216
GluI	GCNGC	4 cut(s)	38, 41, 44, 564
GsuI	CTGGAG	2 cut(s)	37, 531
HaeIII	GGCC	4 cut(s)	5, 108, 322, 361
HapII	CCGG	2 cut(s)	63, 318
HgaI	GACGC	3 cut(s)	17, 65, 71
HhaI	GCGC	1 cut(s)	217
Hin1II	CATG	5 cut(s)	70, 113, 259, 563, 611
Hin6I	GCGC	1 cut(s)	215
HinP1I	GCGC	1 cut(s)	215
HinfI	GANTC	4 cut(s)	95, 176, 497, 617
HpaII	CCGG	2 cut(s)	63, 318
HphI	GGTGA	1 cut(s)	527
Hpy166II	GTNNAC	3 cut(s)	152, 395, 518
Hpy188III	TCNNGA	2 cut(s)	86, 501
Hpy8I	GTNNAC	3 cut(s)	152, 395, 518
Hpy99I	CGWCG	5 cut(s)	11, 32, 52, 391, 435
HpyAV	CCTTC	2 cut(s)	215, 401
HpyCH4III	ACNGT	2 cut(s)	243, 614
HpyCH4IV	ACGT	2 cut(s)	433, 596
HpyCH4V	TGCA	3 cut(s)	563, 586, 637
HpyF10VI	GCNNNNNNNGC	4 cut(s)	43, 563, 569, 578
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	2 cut(s)	433, 596
Hsp92II	CATG	5 cut(s)	70, 113, 259, 563, 611
HspAI	GCGC	1 cut(s)	215
Kzo9I	GATC	1 cut(s)	196
Lsp1109I	GCAGC	2 cut(s)	49, 575
LweI	GCATC	2 cut(s)	197, 568
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	2 cut(s)	120, 249
MaeII	ACGT	2 cut(s)	433, 596
MaeIII	GTNAC	2 cut(s)	467, 614
MalI	GATC	1 cut(s)	198
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	149, 365
MfeI	CAATTG	1 cut(s)	421
MhlI	GDGCHC	2 cut(s)	554, 678
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	4 cut(s)	58, 421, 625, 638
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	3 cut(s)	170, 506, 611
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	2 cut(s)	183, 629
MslI	CAYNNNNRTG	3 cut(s)	138, 572, 612
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	2 cut(s)	63, 318
MspR9I	CCNGG	6 cut(s)	273, 318, 319, 381, 510, 654
MunI	CAATTG	1 cut(s)	421
MvaI	CCWGG	4 cut(s)	273, 381, 510, 654
MvnI	CGCG	2 cut(s)	82, 430
MwoI	GCNNNNNNNGC	4 cut(s)	43, 563, 569, 578
NciI	CCSGG	2 cut(s)	318, 319
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	5 cut(s)	70, 113, 259, 563, 611
NlaIV	GGNNCC	2 cut(s)	369, 677
NmuCI	GTSAC	1 cut(s)	614
NsbI	TGCGCA	1 cut(s)	216
PceI	AGGCCT	1 cut(s)	361
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	1 cut(s)	95
PflFI	GACNNNGTC	1 cut(s)	620
PflMI	CCANNNNNTGG	1 cut(s)	464
PfoI	TCCNGGA	1 cut(s)	508
PkrI	GCNGC	4 cut(s)	39, 42, 45, 565
PleI	GAGTC	3 cut(s)	170, 505, 611
PpsI	GAGTC	3 cut(s)	170, 505, 611
Psp6I	CCWGG	4 cut(s)	271, 379, 508, 652
PspGI	CCWGG	4 cut(s)	271, 379, 508, 652
PspN4I	GGNNCC	2 cut(s)	369, 677
PspPI	GGNCC	1 cut(s)	320
PsrI	GAACNNNNNNTAC	2 cut(s)	510, 542
PsyI	GACNNNGTC	1 cut(s)	620
RsaI	GTAC	4 cut(s)	23, 394, 427, 528
RsaNI	GTAC	4 cut(s)	22, 393, 426, 527
RseI	CAYNNNNRTG	3 cut(s)	138, 572, 612
SaqAI	TTAA	2 cut(s)	183, 629
SatI	GCNGC	4 cut(s)	38, 41, 44, 564
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	3 cut(s)	170, 506, 611
ScrFI	CCNGG	6 cut(s)	273, 318, 319, 381, 510, 654
SduI	GDGCHC	2 cut(s)	554, 678
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	2 cut(s)	197, 568
SmaI	CCCGGG	1 cut(s)	319
SmiMI	CAYNNNNRTG	3 cut(s)	138, 572, 612
Sse9I	AATT	4 cut(s)	58, 421, 625, 638
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	4 cut(s)	41, 44, 80, 261
SspMI	CTAG	2 cut(s)	120, 249
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	6 cut(s)	271, 316, 317, 379, 508, 652
TaaI	ACNGT	2 cut(s)	243, 614
TaiI	ACGT	2 cut(s)	436, 599
TaqI	TCGA	1 cut(s)	600
TaqII	GACCGA	1 cut(s)	610
TasI	AATT	4 cut(s)	58, 421, 625, 638
TatI	WGTACW	1 cut(s)	392
TauI	GCSGC	2 cut(s)	43, 46
TfiI	GAWTC	1 cut(s)	95
Tru1I	TTAA	2 cut(s)	183, 629
Tru9I	TTAA	2 cut(s)	183, 629
TseFI	GTSAC	1 cut(s)	614
TseI	GCWGC	2 cut(s)	37, 563
Tsp45I	GTSAC	1 cut(s)	614
TspDTI	ATGAA	1 cut(s)	71
TspGWI	ACGGA	2 cut(s)	45, 146
TspMI	CCCGGG	1 cut(s)	317
Tth111I	GACNNNGTC	1 cut(s)	620
Van91I	CCANNNNNTGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	58
XmaI	CCCGGG	1 cut(s)	317
XspI	CTAG	2 cut(s)	120, 249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.