Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0001021

Physical Location & Seq

Genomic Coordinates Reverse (-)

28902318 .. 28904420

Gene Structure 2103 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G76940.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGGCGGATGGGTACTGGAACCAGCAGCGACAGCAACATCATCCTCCTGGTGGTCCTATGAAACGTCCCCGTTCCGATTTCGAAGCTCCATCATCAACAATGACTATAGGGCACGGTGGTGGTTATTATCCGCGAGATGAGGATCTCGATGTTCCCGATACTAGAACTATCGGTTCAGCTTACGATCGCTATCTCCAGAGCGTGCAATCAGGAGAAGGTGGTTCTGTTTCCATGGGAAGATCAGGAGGAGGAGGAGGAGGAGGAGGAGGTAACGTTCAAACCATAGATGATTTTATGTTGAGACGTGGTGGAGTTCTCCCTTTAGACCATGGTCCAAATGGTCACACCATTGGTTTTGATCCCCCAGAACCTGTTGGTAGGCGTAACCTACCTTCAGATGCATCCAACACTTTATATGTTGAAGGACTTCCTTCTAATTGCTCTAGGAGGGAAGTAGCTCATATATTTCGACCTTTTGTAGGATACAGAGAAGTGAGACTTGTGACCAAAGACTCCAAACATCGGAACGGAGATCCTATTGTTCTTTGCTTTGTTGATTTTACAAACCCTGCCTGTGCTGCGACTGCTCTGAGCGCCTTACAAGGCTATCGAATGGACGAAAACGAGTCTGATTCCAAGTTCCTGCGGCTCCAGTTTTCTAGGAAACCAGGTTCAAGACCAGGACAAAGAGGAAGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008380 GO:0009987 GO:0010467 GO:0016070 GO:0016071 GO:0017069 GO:0034641 GO:0035613 GO:0035614 GO:0043170 GO:0044237 GO:0044238 GO:0046483 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

233

Amino Acids

25.42

Weight (kDa)

8.82

Isoelectric Point (pI)

57.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21326 AT1G76940 AT1G76940 AT1G76940
fragaria_vesca	FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_7g32221 FvH4_7g32221
malus_domestica	MD01G1224900.v1.1 MD05G1020700.v1.1 MD07G1295500.v1.1 MD10G1021500.v1.1 MD10G1021600.v1.1
prunus_persica	Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1
pyrus_communis	pycom01g23350 pycom05g01200 pycom07g26810 pycom10g01470 pycom10g01480
rosa_chinensis	RchiOBHm_Chr1g0381871 RchiOBHm_Chr6g0276391
rosa_laevigata	RLG00000013397 RLG00000026202
rosa_multiflora	Rmu_sc0004126.1_g000019 Rmu_sc0004248.1_g000007 Rmu_sc0010238.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278360 Rroxscaffold_7G00192260
rosa_rugosa	Rorug01G0432000 Rorug06G0101200
rosa_samantha	Rh1AG455100 Rh1BG412300 Rh1CG427000 Rh1DG444600 Rh6AG211900 Rh6BG216100 Rh6CG218400 Rh6CG218800 Rh6DG208300
rosa_wichuraiana	Rw1G041390 Rw1G041460 Rw6G018500 Rw6G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	133
AciI	CCGC	3 cut(s)	5, 131, 646
AclI	AACGTT	1 cut(s)	273
AclWI	GGATC	3 cut(s)	150, 353, 527
AcuI	CTGAAG	1 cut(s)	378
AfaI	GTAC	1 cut(s)	14
AfiI	CCNNNNNNNGG	3 cut(s)	50, 479, 522
AgsI	TTSAA	3 cut(s)	278, 422, 675
AjiI	CACGTC	1 cut(s)	305
AjnI	CCWGG	3 cut(s)	46, 667, 679
AleI	CACNNNNGTG	1 cut(s)	117
AloI	GAACNNNNNNTCC	4 cut(s)	258, 290, 655, 687
AluBI	AGCT	3 cut(s)	86, 179, 458
AluI	AGCT	3 cut(s)	86, 179, 458
Alw26I	GTCTC	2 cut(s)	295, 490
AlwI	GGATC	3 cut(s)	150, 353, 527
AlwNI	CAGNNNCTG	1 cut(s)	371
ApeKI	GCWGC	2 cut(s)	25, 578
Asp700I	GAANNNNTTC	1 cut(s)	426
AspLEI	GCGC	1 cut(s)	596
AspS9I	GGNCC	2 cut(s)	53, 332
AsuII	TTCGAA	1 cut(s)	81
AvaII	GGWCC	2 cut(s)	53, 332
BaeGI	GKGCMC	1 cut(s)	114
BarI	GAAGNNNNNNTAC	2 cut(s)	376, 408
BbvI	GCAGC	2 cut(s)	37, 565
BccI	CCATC	2 cut(s)	2, 97
BciT130I	CCWGG	3 cut(s)	48, 669, 681
BciVI	GTATCC	1 cut(s)	476
BcoDI	GTCTC	2 cut(s)	295, 490
BfaI	CTAG	3 cut(s)	162, 444, 660
BfmI	CTRYAG	1 cut(s)	105
BfoI	RGCGCY	1 cut(s)	597
BfuI	GTATCC	1 cut(s)	476
BisI	GCNGC	3 cut(s)	26, 579, 647
BlsI	GCNGC	3 cut(s)	27, 580, 648
Bme1390I	CCNGG	3 cut(s)	48, 669, 681
Bme18I	GGWCC	2 cut(s)	53, 332
BmgBI	CACGTC	1 cut(s)	305
BmgT120I	GGNCC	2 cut(s)	53, 332
BmiI	GGNNCC	2 cut(s)	20, 650
BmrFI	CCNGG	3 cut(s)	48, 669, 681
BmsI	GCATC	2 cut(s)	388, 410
BoxI	GACNNNNGTC	1 cut(s)	330
BpmI	CTGGAG	2 cut(s)	179, 635
Bpu14I	TTCGAA	1 cut(s)	81
BsaBI	GATNNNNATC	2 cut(s)	141, 189
BsaJI	CCNNGG	2 cut(s)	231, 328
BsaXI	ACNNNNNCTCC	2 cut(s)	258, 288
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 479, 522
Bse1I	ACTGG	2 cut(s)	20, 652
Bse8I	GATNNNNATC	2 cut(s)	141, 189
BseBI	CCWGG	3 cut(s)	48, 669, 681
BseDI	CCNNGG	2 cut(s)	231, 328
BseGI	GGATG	3 cut(s)	13, 40, 401
BseJI	GATNNNNATC	2 cut(s)	141, 189
BseLI	CCNNNNNNNGG	3 cut(s)	50, 479, 522
BseMII	CTCAG	1 cut(s)	581
BseNI	ACTGG	2 cut(s)	20, 652
BseRI	GAGGAG	7 cut(s)	261, 264, 267, 270, 273, 276, 279
BseSI	GKGCMC	1 cut(s)	114
BseXI	GCAGC	2 cut(s)	37, 565
Bsh1236I	CGCG	1 cut(s)	133
Bsh1285I	CGRYCG	1 cut(s)	187
BsiEI	CGRYCG	1 cut(s)	187
BslFI	GGGAC	1 cut(s)	51
BslI	CCNNNNNNNGG	3 cut(s)	50, 479, 522
BsmAI	GTCTC	2 cut(s)	295, 490
BsmBI	CGTCTC	1 cut(s)	295
BsmFI	GGGAC	1 cut(s)	51
Bsp119I	TTCGAA	1 cut(s)	81
Bsp1286I	GDGCHC	1 cut(s)	114
Bsp143I	GATC	5 cut(s)	142, 184, 239, 358, 532
Bsp19I	CCATGG	2 cut(s)	231, 328
BspACI	CCGC	3 cut(s)	5, 131, 646
BspCNI	CTCAG	1 cut(s)	582
BspFNI	CGCG	1 cut(s)	133
BspLI	GGNNCC	2 cut(s)	20, 650
BspPI	GGATC	3 cut(s)	150, 353, 527
BspT104I	TTCGAA	1 cut(s)	81
BsrI	ACTGG	2 cut(s)	20, 652
BssECI	CCNNGG	2 cut(s)	231, 328
BssMI	GATC	5 cut(s)	142, 184, 239, 358, 532
BssT1I	CCWWGG	2 cut(s)	231, 328
Bst2UI	CCWGG	3 cut(s)	48, 669, 681
Bst4CI	ACNGT	1 cut(s)	116
BstBI	TTCGAA	1 cut(s)	81
BstC8I	GCNNGC	1 cut(s)	203
BstDEI	CTNAG	1 cut(s)	590
BstDSI	CCRYGG	2 cut(s)	231, 328
BstENI	CCTNNNNNAGG	1 cut(s)	477
BstF5I	GGATG	3 cut(s)	13, 40, 401
BstFNI	CGCG	1 cut(s)	133
BstH2I	RGCGCY	1 cut(s)	597
BstHHI	GCGC	1 cut(s)	596
BstKTI	GATC	5 cut(s)	145, 187, 242, 361, 535
BstMAI	GTCTC	2 cut(s)	295, 490
BstMBI	GATC	5 cut(s)	142, 184, 239, 358, 532
BstMCI	CGRYCG	1 cut(s)	187
BstMWI	GCNNNNNNNGC	4 cut(s)	31, 578, 584, 593
BstNI	CCWGG	3 cut(s)	48, 669, 681
BstPAI	GACNNNNGTC	1 cut(s)	330
BstSCI	CCNGG	3 cut(s)	46, 667, 679
BstSFI	CTRYAG	1 cut(s)	105
BstSLI	GKGCMC	1 cut(s)	114
BstUI	CGCG	1 cut(s)	133
BstV1I	GCAGC	2 cut(s)	37, 565
BstX2I	RGATCY	2 cut(s)	142, 532
BstYI	RGATCY	2 cut(s)	142, 532
BsuI	GTATCC	1 cut(s)	476
BtgI	CCRYGG	2 cut(s)	231, 328
BtrI	CACGTC	1 cut(s)	305
BtsCI	GGATG	3 cut(s)	13, 40, 401
Cac8I	GCNNGC	1 cut(s)	203
CaiI	CAGNNNCTG	1 cut(s)	371
CfoI	GCGC	1 cut(s)	596
Cfr13I	GGNCC	2 cut(s)	53, 332
CsiI	ACCWGGT	1 cut(s)	667
Csp6I	GTAC	1 cut(s)	13
CviAII	CATG	2 cut(s)	232, 329
CviJI	RGCY	5 cut(s)	86, 179, 458, 606, 649
CviKI_1	RGCY	5 cut(s)	86, 179, 458, 606, 649
CviQI	GTAC	1 cut(s)	13
DdeI	CTNAG	1 cut(s)	590
DpnI	GATC	5 cut(s)	144, 186, 241, 360, 534
DpnII	GATC	5 cut(s)	142, 184, 239, 358, 532
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	2 cut(s)	231, 328
Eco47I	GGWCC	2 cut(s)	53, 332
Eco57I	CTGAAG	1 cut(s)	378
EcoNI	CCTNNNNNAGG	1 cut(s)	477
EcoRII	CCWGG	3 cut(s)	46, 667, 679
EcoT14I	CCWWGG	2 cut(s)	231, 328
EcoT22I	ATGCAT	1 cut(s)	403
ErhI	CCWWGG	2 cut(s)	231, 328
Esp3I	CGTCTC	1 cut(s)	295
FaeI	CATG	2 cut(s)	235, 332
FalI	AAGNNNNNCTT	2 cut(s)	483, 515
FaqI	GGGAC	1 cut(s)	51
FatI	CATG	2 cut(s)	231, 328
Fnu4HI	GCNGC	3 cut(s)	26, 579, 647
FokI	GGATG	3 cut(s)	20, 27, 388
Fsp4HI	GCNGC	3 cut(s)	26, 579, 647
FspBI	CTAG	3 cut(s)	162, 444, 660
GlaI	GCGC	1 cut(s)	595
GluI	GCNGC	3 cut(s)	26, 579, 647
GsuI	CTGGAG	2 cut(s)	179, 635
HaeII	RGCGCY	1 cut(s)	597
HhaI	GCGC	1 cut(s)	596
Hin1II	CATG	2 cut(s)	235, 332
Hin6I	GCGC	1 cut(s)	594
HinP1I	GCGC	1 cut(s)	594
HinfI	GANTC	3 cut(s)	512, 626, 632
Hpy188I	TCNGA	5 cut(s)	76, 397, 525, 591, 631
Hpy188III	TCNNGA	6 cut(s)	146, 155, 196, 210, 243, 675
HpyAV	CCTTC	5 cut(s)	209, 402, 416, 441, 690
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4IV	ACGT	3 cut(s)	64, 273, 304
HpyCH4V	TGCA	2 cut(s)	205, 401
HpyF10VI	GCNNNNNNNGC	4 cut(s)	31, 578, 584, 593
HpyF3I	CTNAG	1 cut(s)	590
HpySE526I	ACGT	3 cut(s)	64, 273, 304
Hsp92II	CATG	2 cut(s)	235, 332
HspAI	GCGC	1 cut(s)	594
Kzo9I	GATC	5 cut(s)	142, 184, 239, 358, 532
LmnI	GCTCC	2 cut(s)	91, 654
Lsp1109I	GCAGC	2 cut(s)	37, 565
LweI	GCATC	2 cut(s)	388, 410
MabI	ACCWGGT	1 cut(s)	667
MaeI	CTAG	3 cut(s)	162, 444, 660
MaeII	ACGT	3 cut(s)	64, 273, 304
MaeIII	GTNAC	4 cut(s)	269, 341, 383, 502
MalI	GATC	5 cut(s)	144, 186, 241, 360, 534
MboI	GATC	5 cut(s)	142, 184, 239, 358, 532
MboII	GAAGA	1 cut(s)	249
MflI	RGATCY	2 cut(s)	142, 532
MhlI	GDGCHC	1 cut(s)	114
MluCI	AATT	1 cut(s)	436
MlyI	GAGTC	2 cut(s)	506, 635
MmeI	TCCRAC	1 cut(s)	429
Mph1103I	ATGCAT	1 cut(s)	403
MroXI	GAANNNNTTC	1 cut(s)	426
MslI	CAYNNNNRTG	1 cut(s)	117
MspR9I	CCNGG	3 cut(s)	48, 669, 681
MvaI	CCWGG	3 cut(s)	48, 669, 681
MvnI	CGCG	1 cut(s)	133
MwoI	GCNNNNNNNGC	4 cut(s)	31, 578, 584, 593
NcoI	CCATGG	2 cut(s)	231, 328
NdeII	GATC	5 cut(s)	142, 184, 239, 358, 532
NlaIII	CATG	2 cut(s)	235, 332
NlaIV	GGNNCC	2 cut(s)	20, 650
NmuCI	GTSAC	2 cut(s)	341, 502
NsiI	ATGCAT	1 cut(s)	403
NspV	TTCGAA	1 cut(s)	81
OliI	CACNNNNGTG	1 cut(s)	117
PcsI	WCGNNNNNNNCGW	1 cut(s)	153
PdmI	GAANNNNTTC	1 cut(s)	426
PfeI	GAWTC	1 cut(s)	632
PkrI	GCNGC	3 cut(s)	27, 580, 648
Ple19I	CGATCG	1 cut(s)	187
PleI	GAGTC	2 cut(s)	506, 634
PpsI	GAGTC	2 cut(s)	506, 634
PshAI	GACNNNNGTC	1 cut(s)	330
Psp1406I	AACGTT	1 cut(s)	273
Psp6I	CCWGG	3 cut(s)	46, 667, 679
PspGI	CCWGG	3 cut(s)	46, 667, 679
PspN4I	GGNNCC	2 cut(s)	20, 650
PspPI	GGNCC	2 cut(s)	53, 332
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	2 cut(s)	142, 532
PvuI	CGATCG	1 cut(s)	187
RsaI	GTAC	1 cut(s)	14
RsaNI	GTAC	1 cut(s)	13
RseI	CAYNNNNRTG	1 cut(s)	117
SatI	GCNGC	3 cut(s)	26, 579, 647
Sau3AI	GATC	5 cut(s)	142, 184, 239, 358, 532
Sau96I	GGNCC	2 cut(s)	53, 332
SchI	GAGTC	2 cut(s)	506, 635
ScrFI	CCNGG	3 cut(s)	48, 669, 681
SduI	GDGCHC	1 cut(s)	114
SexAI	ACCWGGT	1 cut(s)	667
SfaNI	GCATC	2 cut(s)	388, 410
SfcI	CTRYAG	1 cut(s)	105
SfuI	TTCGAA	1 cut(s)	81
SinI	GGWCC	2 cut(s)	53, 332
SmiMI	CAYNNNNRTG	1 cut(s)	117
Sse9I	AATT	1 cut(s)	436
SsiI	CCGC	3 cut(s)	5, 131, 646
SspMI	CTAG	3 cut(s)	162, 444, 660
StyD4I	CCNGG	3 cut(s)	46, 667, 679
StyI	CCWWGG	2 cut(s)	231, 328
TaaI	ACNGT	1 cut(s)	116
TaiI	ACGT	3 cut(s)	67, 276, 307
TaqI	TCGA	4 cut(s)	81, 147, 469, 610
TasI	AATT	1 cut(s)	436
TauI	GCSGC	1 cut(s)	649
TfiI	GAWTC	1 cut(s)	632
TseFI	GTSAC	2 cut(s)	341, 502
TseI	GCWGC	2 cut(s)	25, 578
Tsp45I	GTSAC	2 cut(s)	341, 502
TspDTI	ATGAA	1 cut(s)	74
TspGWI	ACGGA	1 cut(s)	543
VpaK11BI	GGWCC	2 cut(s)	53, 332
XagI	CCTNNNNNAGG	1 cut(s)	477
XcmI	CCANNNNNNNNNTGG	1 cut(s)	335
XmnI	GAANNNNTTC	1 cut(s)	426
XspI	CTAG	3 cut(s)	162, 444, 660
Zsp2I	ATGCAT	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.