FvH4_2g14240

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0001021
Physical Location & Seq
Reverse (-)
12506866 .. 12511830
4965 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g14240.t9

Sequence Viewer

Length: 903 bp
ATGACTATATATATAGAAGGATCTCTGAACACTGAAATTTGGACGAGTTGTTATTTCGGCGAGTTGAAGCGTACAACAAGTTTGGCATCAAGAATCTCTGAAATTCTTATTAGGGTTCTTCTTGTTCATTCAGATTGGTCCACATTTTCTTTACAAATTTGGAGTTCCGCAGAAAAATTAAATATGGCGGACAGCCTCTGGAACCCGCAGCTGCAACTTTTTCCGTCCGGTGCCGCAAAACGACCCCGCTCTGACTACGACCTCCCAACTTCTGGTCTGTATTCAGGTCATGAGATGAATAACTATTTAGCACATGATGATGATTTTGGTGGTCCTAGGGCTGTAAAGGATACAAAATCAATTGGATCTGCATATGACCGTTATCTTCAAACTGGGCAAATGTCTTCAACTACCATGGTTGGAGTTGGATTGGGGAGGCCTGTTGGCAATGGAATGGCTGATCATTTGATGGGTCGCCCTGGTGCTGTTGCTTCGGATTTAATTAGTGGTCGAAATATTAGTCTTGCTCAGCTCCCAGTGGATGCAATATCTAGACTAGCACCTGGACATGAAACAGCTCCTTTACCCCCAGATGCTACCAACACTTTATACATAGAAGGGCTTCCTCCTGACAGCACAAGGAGGGAAGTAGCTCATATCTTTCGCCCCTTTGTGGGATATAAAGAAGTGAGGCTTGTGAGCAAAGAGTCCAAACTTCGTGGTGGTGATCCTCTTATCCTCTGTTTTGTGGATTTTGTAAATCCAGCCTGCGCTGCAACTGCCATGAGTGCTTTGCAAGGCTATAAAATGGATGAACACAATCCCGATTCTAATTACTTGCGGCTGCAGTTTTCTCGGTTCCCAGGTCCAAGGTCTGGACATGGAACCCGTAGTAAGAGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

301

Amino Acids

32.97

Weight (kDa)

7.76

Isoelectric Point (pI)

54.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 105 - 175 8.1e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 230
AccB7I CCANNNNNTGG 2 cut(s) 272, 875
AccBSI CCGCTC 1 cut(s) 249
AciI CCGC 6 cut(s) 168, 188, 206, 234, 247, 841
AclWI GGATC 3 cut(s) 28, 373, 722
AcsI RAATTY 3 cut(s) 36, 102, 156
AfaI GTAC 1 cut(s) 73
AfiI CCNNNNNNNGG 4 cut(s) 272, 673, 674, 875
AgsI TTSAA 3 cut(s) 67, 389, 408
AjnI CCWGG 3 cut(s) 478, 562, 862
AluBI AGCT 4 cut(s) 211, 532, 578, 653
AluI AGCT 4 cut(s) 211, 532, 578, 653
AlwI GGATC 3 cut(s) 28, 373, 722
AlwNI CAGNNNCTG 1 cut(s) 198
AoxI GGCC 1 cut(s) 437
ApeKI GCWGC 4 cut(s) 208, 211, 773, 844
ApoI RAATTY 3 cut(s) 36, 102, 156
ArsI GACNNNNNNTTYG 2 cut(s) 505, 537
Asp700I GAANNNNTTC 1 cut(s) 621
AspA2I CCTAGG 1 cut(s) 335
AspLEI GCGC 1 cut(s) 773
AspS9I GGNCC 3 cut(s) 138, 332, 866
AsuHPI GGTGA 1 cut(s) 737
AvaII GGWCC 3 cut(s) 138, 332, 866
AvrII CCTAGG 1 cut(s) 335
BanI GGYRCC 1 cut(s) 230
BbsI GAAGAC 1 cut(s) 396
BbvI GCAGC 4 cut(s) 198, 220, 760, 831
BccI CCATC 1 cut(s) 463
BcgI CGANNNNNNTGC 2 cut(s) 836, 870
BciT130I CCWGG 3 cut(s) 480, 564, 864
BciVI GTATCC 1 cut(s) 343
BclI TGATCA 1 cut(s) 460
BfaI CTAG 3 cut(s) 336, 552, 557
BfmI CTRYAG 1 cut(s) 845
BfuI GTATCC 1 cut(s) 343
BisI GCNGC 6 cut(s) 209, 212, 234, 774, 842, 845
BlnI CCTAGG 1 cut(s) 335
BlpI GCTNAGC 1 cut(s) 528
BlsI GCNGC 6 cut(s) 210, 213, 235, 775, 843, 846
Bme1390I CCNGG 3 cut(s) 480, 564, 864
Bme18I GGWCC 3 cut(s) 138, 332, 866
BmgT120I GGNCC 3 cut(s) 138, 332, 866
BmiI GGNNCC 4 cut(s) 203, 232, 860, 886
BmrFI CCNGG 3 cut(s) 480, 564, 864
BmrI ACTGGG 2 cut(s) 402, 530
BmsI GCATC 3 cut(s) 95, 532, 583
BmuI ACTGGG 2 cut(s) 402, 530
BpiI GAAGAC 1 cut(s) 396
Bpu1102I GCTNAGC 1 cut(s) 528
BsaJI CCNNGG 5 cut(s) 335, 414, 478, 862, 869
BsaWI WCCGGW 1 cut(s) 227
Bsc4I CCNNNNNNNGG 4 cut(s) 272, 673, 674, 875
Bse1I ACTGG 2 cut(s) 397, 536
Bse3DI GCAATG 1 cut(s) 454
BseBI CCWGG 3 cut(s) 480, 564, 864
BseDI CCNNGG 5 cut(s) 335, 414, 478, 862, 869
BseGI GGATG 2 cut(s) 547, 817
BseLI CCNNNNNNNGG 4 cut(s) 272, 673, 674, 875
BseMI GCAATG 1 cut(s) 454
BseMII CTCAG 1 cut(s) 542
BseNI ACTGG 2 cut(s) 397, 536
BseXI GCAGC 4 cut(s) 198, 220, 760, 831
BshFI GGCC 1 cut(s) 439
BshNI GGYRCC 1 cut(s) 230
BsiSI CCGG 1 cut(s) 228
BslI CCNNNNNNNGG 4 cut(s) 272, 673, 674, 875
BsnI GGCC 1 cut(s) 439
Bsp143I GATC 4 cut(s) 20, 365, 460, 727
Bsp1720I GCTNAGC 1 cut(s) 528
Bsp19I CCATGG 1 cut(s) 414
BspACI CCGC 6 cut(s) 168, 188, 206, 234, 247, 841
BspANI GGCC 1 cut(s) 439
BspCNI CTCAG 1 cut(s) 541
BspHI TCATGA 1 cut(s) 289
BspLI GGNNCC 4 cut(s) 203, 232, 860, 886
BspMAI CTGCAG 1 cut(s) 849
BspPI GGATC 3 cut(s) 28, 373, 722
BspT107I GGYRCC 1 cut(s) 230
BsrBI CCGCTC 1 cut(s) 249
BsrDI GCAATG 1 cut(s) 454
BsrI ACTGG 2 cut(s) 397, 536
BssECI CCNNGG 5 cut(s) 335, 414, 478, 862, 869
BssMI GATC 4 cut(s) 20, 365, 460, 727
BssT1I CCWWGG 3 cut(s) 335, 414, 869
Bst2UI CCWGG 3 cut(s) 480, 564, 864
Bst4CI ACNGT 1 cut(s) 380
BstC8I GCNNGC 1 cut(s) 769
BstDEI CTNAG 1 cut(s) 528
BstDSI CCRYGG 1 cut(s) 414
BstF5I GGATG 2 cut(s) 547, 817
BstHHI GCGC 1 cut(s) 773
BstKTI GATC 4 cut(s) 23, 368, 463, 730
BstMBI GATC 4 cut(s) 20, 365, 460, 727
BstMWI GCNNNNNNNGC 3 cut(s) 773, 779, 788
BstNI CCWGG 3 cut(s) 480, 564, 864
BstSCI CCNGG 3 cut(s) 478, 562, 862
BstSFI CTRYAG 1 cut(s) 845
BstV1I GCAGC 4 cut(s) 198, 220, 760, 831
BstV2I GAAGAC 1 cut(s) 396
BstX2I RGATCY 2 cut(s) 20, 365
BstYI RGATCY 2 cut(s) 20, 365
BsuI GTATCC 1 cut(s) 343
BsuRI GGCC 1 cut(s) 439
BtgI CCRYGG 1 cut(s) 414
BtsCI GGATG 2 cut(s) 547, 817
BtsIMutI CAGTG 2 cut(s) 30, 543
Cac8I GCNNGC 1 cut(s) 769
CaiI CAGNNNCTG 1 cut(s) 198
CciI TCATGA 1 cut(s) 289
CfoI GCGC 1 cut(s) 773
Cfr13I GGNCC 3 cut(s) 138, 332, 866
Csp6I GTAC 1 cut(s) 72
CspCI CAANNNNNGTGG 2 cut(s) 700, 735
CviAII CATG 6 cut(s) 290, 314, 415, 569, 784, 881
CviQI GTAC 1 cut(s) 72
DdeI CTNAG 1 cut(s) 528
DpnI GATC 4 cut(s) 22, 367, 462, 729
DpnII GATC 4 cut(s) 20, 365, 460, 727
EciI GGCGGA 1 cut(s) 203
Eco130I CCWWGG 3 cut(s) 335, 414, 869
Eco147I AGGCCT 1 cut(s) 439
Eco47I GGWCC 3 cut(s) 138, 332, 866
EcoRII CCWGG 3 cut(s) 478, 562, 862
EcoT14I CCWWGG 3 cut(s) 335, 414, 869
ErhI CCWWGG 3 cut(s) 335, 414, 869
FaeI CATG 6 cut(s) 293, 317, 418, 572, 787, 884
FalI AAGNNNNNCTT 2 cut(s) 678, 710
FatI CATG 6 cut(s) 289, 313, 414, 568, 783, 880
FauI CCCGC 2 cut(s) 213, 254
FauNDI CATATG 1 cut(s) 373
FbaI TGATCA 1 cut(s) 460
Fnu4HI GCNGC 6 cut(s) 209, 212, 234, 774, 842, 845
FokI GGATG 2 cut(s) 554, 824
Fsp4HI GCNGC 6 cut(s) 209, 212, 234, 774, 842, 845
FspBI CTAG 3 cut(s) 336, 552, 557
GlaI GCGC 1 cut(s) 772
GluI GCNGC 6 cut(s) 209, 212, 234, 774, 842, 845
HaeIII GGCC 1 cut(s) 439
HapII CCGG 1 cut(s) 228
HhaI GCGC 1 cut(s) 773
Hin1II CATG 6 cut(s) 293, 317, 418, 572, 787, 884
Hin6I GCGC 1 cut(s) 771
HinP1I GCGC 1 cut(s) 771
HinfI GANTC 3 cut(s) 93, 707, 827
HpaII CCGG 1 cut(s) 228
HphI GGTGA 1 cut(s) 737
Hpy166II GTNNAC 1 cut(s) 141
Hpy188I TCNGA 5 cut(s) 27, 100, 133, 253, 496
Hpy188III TCNNGA 7 cut(s) 90, 199, 290, 552, 629, 824, 876
Hpy8I GTNNAC 1 cut(s) 141
HpyAV CCTTC 2 cut(s) 11, 611
HpyCH4III ACNGT 1 cut(s) 380
HpyCH4V TGCA 6 cut(s) 214, 371, 545, 776, 796, 847
HpyF10VI GCNNNNNNNGC 3 cut(s) 773, 779, 788
HpyF3I CTNAG 1 cut(s) 528
Hsp92II CATG 6 cut(s) 293, 317, 418, 572, 787, 884
HspAI GCGC 1 cut(s) 771
Ksp22I TGATCA 1 cut(s) 460
Kzo9I GATC 4 cut(s) 20, 365, 460, 727
LmnI GCTCC 2 cut(s) 537, 583
Lsp1109I GCAGC 4 cut(s) 198, 220, 760, 831
LweI GCATC 3 cut(s) 95, 532, 583
MaeI CTAG 3 cut(s) 336, 552, 557
MalI GATC 4 cut(s) 22, 367, 462, 729
MbiI CCGCTC 1 cut(s) 249
MboI GATC 4 cut(s) 20, 365, 460, 727
MboII GAAGA 3 cut(s) 110, 377, 396
MfeI CAATTG 1 cut(s) 360
MflI RGATCY 2 cut(s) 20, 365
MluCI AATT 7 cut(s) 36, 102, 156, 176, 360, 501, 832
MlyI GAGTC 1 cut(s) 716
MmeI TCCRAC 2 cut(s) 400, 406
MnlI CCTC 9 cut(s) 206, 272, 429, 636, 636, 684, 741, 749, 891
MroXI GAANNNNTTC 1 cut(s) 621
MseI TTAA 2 cut(s) 179, 500
MslI CAYNNNNRTG 1 cut(s) 318
MspA1I CMGCKG 1 cut(s) 211
MspI CCGG 1 cut(s) 228
MspR9I CCNGG 3 cut(s) 480, 564, 864
MunI CAATTG 1 cut(s) 360
MvaI CCWGG 3 cut(s) 480, 564, 864
MwoI GCNNNNNNNGC 3 cut(s) 773, 779, 788
NcoI CCATGG 1 cut(s) 414
NdeI CATATG 1 cut(s) 373
NdeII GATC 4 cut(s) 20, 365, 460, 727
NlaIII CATG 6 cut(s) 293, 317, 418, 572, 787, 884
NlaIV GGNNCC 4 cut(s) 203, 232, 860, 886
PagI TCATGA 1 cut(s) 289
PceI AGGCCT 1 cut(s) 439
PdmI GAANNNNTTC 1 cut(s) 621
PfeI GAWTC 2 cut(s) 93, 827
PflMI CCANNNNNTGG 2 cut(s) 272, 875
PkrI GCNGC 6 cut(s) 210, 213, 235, 775, 843, 846
PleI GAGTC 1 cut(s) 715
PpsI GAGTC 1 cut(s) 715
Psp6I CCWGG 3 cut(s) 478, 562, 862
PspGI CCWGG 3 cut(s) 478, 562, 862
PspN4I GGNNCC 4 cut(s) 203, 232, 860, 886
PspPI GGNCC 3 cut(s) 138, 332, 866
PstI CTGCAG 1 cut(s) 849
PstNI CAGNNNCTG 1 cut(s) 198
PsuI RGATCY 2 cut(s) 20, 365
PvuII CAGCTG 1 cut(s) 211
RsaI GTAC 1 cut(s) 73
RsaNI GTAC 1 cut(s) 72
RseI CAYNNNNRTG 1 cut(s) 318
SaqAI TTAA 2 cut(s) 179, 500
SatI GCNGC 6 cut(s) 209, 212, 234, 774, 842, 845
Sau3AI GATC 4 cut(s) 20, 365, 460, 727
Sau96I GGNCC 3 cut(s) 138, 332, 866
SchI GAGTC 1 cut(s) 716
ScrFI CCNGG 3 cut(s) 480, 564, 864
SfaNI GCATC 3 cut(s) 95, 532, 583
SfcI CTRYAG 1 cut(s) 845
SinI GGWCC 3 cut(s) 138, 332, 866
SmiMI CAYNNNNRTG 1 cut(s) 318
Sse9I AATT 7 cut(s) 36, 102, 156, 176, 360, 501, 832
SseBI AGGCCT 1 cut(s) 439
SsiI CCGC 6 cut(s) 168, 188, 206, 234, 247, 841
SspI AATATT 1 cut(s) 517
SspMI CTAG 3 cut(s) 336, 552, 557
StuI AGGCCT 1 cut(s) 439
StyD4I CCNGG 3 cut(s) 478, 562, 862
StyI CCWWGG 3 cut(s) 335, 414, 869
TaaI ACNGT 1 cut(s) 380
TaqI TCGA 1 cut(s) 511
TasI AATT 7 cut(s) 36, 102, 156, 176, 360, 501, 832
TauI GCSGC 2 cut(s) 236, 844
TfiI GAWTC 2 cut(s) 93, 827
Tru1I TTAA 2 cut(s) 179, 500
Tru9I TTAA 2 cut(s) 179, 500
TscAI CASTG 2 cut(s) 37, 543
TseI GCWGC 4 cut(s) 208, 211, 773, 844
TspDTI ATGAA 4 cut(s) 116, 311, 585, 828
TspGWI ACGGA 1 cut(s) 213
TspRI CASTG 2 cut(s) 37, 543
Van91I CCANNNNNTGG 2 cut(s) 272, 875
VpaK11BI GGWCC 3 cut(s) 138, 332, 866
XapI RAATTY 3 cut(s) 36, 102, 156
XbaI TCTAGA 1 cut(s) 551
XmaJI CCTAGG 1 cut(s) 335
XmnI GAANNNNTTC 1 cut(s) 621
XspI CTAG 3 cut(s) 336, 552, 557
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.