Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001021

Physical Location & Seq

Genomic Coordinates Forward (+)

68519593 .. 68521660

Gene Structure 2068 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG427000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGCAGACGCTTATTGGAGGTACAGCGACGGACGGCAGCCGCCTCCGTCGGGGATGAATTCCGGCATGGGGAAGCGCCCGCGTCCCGATTACGATTCCCATAGTGGCCATGACCTGCCTGGTTATTATCCCCATGAAGATGATAGAGGTTCACTCCGTGGGATGAGAGATACAGACTCCATTAACGCATCATATGATCGCTACCTGCGTTCTGCGCAAATGTCATCCTATAGTGGGGGACAGTCTGCTAGAAACATGAGCGGGGGACTACCTGGTCGTTCTGTTGATGACCCACGAATGATGGGAATGGTTGAACCTGGGCCTGTAAAAGAGAGGGTCTTGGGATTGGGAAGTGGGAGGCCTGAGGTTCCCCTTCCTCCTGGTGCTACCAGTACACTTTTTGTGGAAGGATTGCCTGCCAACTGTACACGACGTGAAGTAGCTCACATCTTTCGCCCATTTGTTGGCTACAAAGAAGTAAGACTCGTAAGCAAGGAATCAAGACATGTAAGTTTATCTTTCTTCAAGGGTAGATTCAATTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

181

Amino Acids

20.04

Weight (kDa)

9.47

Isoelectric Point (pI)

57.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21326 AT1G76940 AT1G76940 AT1G76940
fragaria_vesca	FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_7g32221 FvH4_7g32221
malus_domestica	MD01G1224900.v1.1 MD05G1020700.v1.1 MD07G1295500.v1.1 MD10G1021500.v1.1 MD10G1021600.v1.1
prunus_persica	Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1
pyrus_communis	pycom01g23350 pycom05g01200 pycom07g26810 pycom10g01470 pycom10g01480
rosa_chinensis	RchiOBHm_Chr1g0381871 RchiOBHm_Chr6g0276391
rosa_laevigata	RLG00000013397 RLG00000026202
rosa_multiflora	Rmu_sc0004126.1_g000019 Rmu_sc0004248.1_g000007 Rmu_sc0010238.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278360 Rroxscaffold_7G00192260
rosa_rugosa	Rorug01G0432000 Rorug06G0101200
rosa_samantha	Rh1AG455100 Rh1BG412300 Rh1CG427000 Rh1DG444600 Rh6AG211900 Rh6BG216100 Rh6CG218400 Rh6CG218800 Rh6DG208300
rosa_wichuraiana	Rw1G041390 Rw1G041460 Rw6G018500 Rw6G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	273
Acc16I	TGCGCA	1 cut(s)	216
Acc36I	ACCTGC	2 cut(s)	123, 213
AccB7I	CCANNNNNTGG	1 cut(s)	464
AccBSI	CCGCTC	1 cut(s)	261
AccII	CGCG	1 cut(s)	82
AciI	CCGC	3 cut(s)	41, 80, 261
AcoI	YGGCCR	1 cut(s)	106
AcsI	RAATTY	1 cut(s)	58
AdeI	CACNNNGTG	2 cut(s)	158, 434
AfaI	GTAC	3 cut(s)	23, 394, 427
AfiI	CCNNNNNNNGG	4 cut(s)	50, 69, 234, 464
AflIII	ACRYGT	1 cut(s)	505
AgsI	TTSAA	3 cut(s)	314, 526, 538
AjiI	CACGTC	1 cut(s)	434
AjnI	CCWGG	4 cut(s)	118, 271, 316, 379
AluBI	AGCT	1 cut(s)	443
AluI	AGCT	1 cut(s)	443
AoxI	GGCC	3 cut(s)	106, 320, 359
ApeKI	GCWGC	1 cut(s)	37
ApoI	RAATTY	1 cut(s)	58
AspLEI	GCGC	2 cut(s)	78, 217
AspS9I	GGNCC	1 cut(s)	320
AxyI	CCTNAGG	1 cut(s)	363
BalI	TGGCCA	1 cut(s)	108
BbvI	GCAGC	1 cut(s)	49
BccI	CCATC	1 cut(s)	295
BceAI	ACGGC	1 cut(s)	50
BciT130I	CCWGG	4 cut(s)	120, 273, 318, 381
BfaI	CTAG	1 cut(s)	249
BfmI	CTRYAG	1 cut(s)	229
BfoI	RGCGCY	1 cut(s)	79
BfuAI	ACCTGC	2 cut(s)	123, 213
BisI	GCNGC	2 cut(s)	38, 41
BlsI	GCNGC	2 cut(s)	39, 42
Bme1390I	CCNGG	4 cut(s)	120, 273, 318, 381
BmgBI	CACGTC	1 cut(s)	434
BmgT120I	GGNCC	1 cut(s)	320
BmiI	GGNNCC	1 cut(s)	369
BmrFI	CCNGG	4 cut(s)	120, 273, 318, 381
BmsI	GCATC	1 cut(s)	197
BplI	GAGNNNNNCTC	2 cut(s)	138, 170
BsaJI	CCNNGG	2 cut(s)	157, 317
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 69, 234, 464
Bse1I	ACTGG	1 cut(s)	390
Bse21I	CCTNAGG	1 cut(s)	363
BseBI	CCWGG	4 cut(s)	120, 273, 318, 381
BseDI	CCNNGG	2 cut(s)	157, 317
BseGI	GGATG	3 cut(s)	60, 168, 224
BseLI	CCNNNNNNNGG	4 cut(s)	50, 69, 234, 464
BseMII	CTCAG	1 cut(s)	354
BseNI	ACTGG	1 cut(s)	390
BseXI	GCAGC	1 cut(s)	49
Bsh1236I	CGCG	1 cut(s)	82
BshFI	GGCC	3 cut(s)	108, 322, 361
BsiSI	CCGG	1 cut(s)	63
BslFI	GGGAC	3 cut(s)	69, 252, 279
BslI	CCNNNNNNNGG	4 cut(s)	50, 69, 234, 464
BsmFI	GGGAC	3 cut(s)	69, 252, 279
BsnI	GGCC	3 cut(s)	108, 322, 361
Bsp1407I	TGTACA	1 cut(s)	425
Bsp143I	GATC	1 cut(s)	196
BspACI	CCGC	3 cut(s)	41, 80, 261
BspANI	GGCC	3 cut(s)	108, 322, 361
BspCNI	CTCAG	1 cut(s)	355
BspFNI	CGCG	1 cut(s)	82
BspLI	GGNNCC	1 cut(s)	369
BspMI	ACCTGC	2 cut(s)	123, 213
BsrBI	CCGCTC	1 cut(s)	261
BsrGI	TGTACA	1 cut(s)	425
BsrI	ACTGG	1 cut(s)	390
BssECI	CCNNGG	2 cut(s)	157, 317
BssMI	GATC	1 cut(s)	196
Bst2UI	CCWGG	4 cut(s)	120, 273, 318, 381
Bst4CI	ACNGT	2 cut(s)	243, 425
BstAUI	TGTACA	1 cut(s)	425
BstC8I	GCNNGC	2 cut(s)	80, 417
BstDEI	CTNAG	1 cut(s)	363
BstDSI	CCRYGG	1 cut(s)	157
BstF5I	GGATG	3 cut(s)	60, 168, 224
BstFNI	CGCG	1 cut(s)	82
BstH2I	RGCGCY	1 cut(s)	79
BstHHI	GCGC	2 cut(s)	78, 217
BstKTI	GATC	1 cut(s)	199
BstMBI	GATC	1 cut(s)	196
BstMWI	GCNNNNNNNGC	1 cut(s)	214
BstNI	CCWGG	4 cut(s)	120, 273, 318, 381
BstNSI	RCATGY	1 cut(s)	509
BstSCI	CCNGG	4 cut(s)	118, 271, 316, 379
BstSFI	CTRYAG	1 cut(s)	229
BstUI	CGCG	1 cut(s)	82
BstV1I	GCAGC	1 cut(s)	49
Bsu36I	CCTNAGG	1 cut(s)	363
BsuRI	GGCC	3 cut(s)	108, 322, 361
BtgI	CCRYGG	1 cut(s)	157
BtrI	CACGTC	1 cut(s)	434
BtsCI	GGATG	3 cut(s)	60, 168, 224
BveI	ACCTGC	2 cut(s)	123, 213
Cac8I	GCNNGC	2 cut(s)	80, 417
CfoI	GCGC	2 cut(s)	78, 217
Cfr13I	GGNCC	1 cut(s)	320
CseI	GACGC	2 cut(s)	17, 71
CsiI	ACCWGGT	1 cut(s)	271
Csp6I	GTAC	3 cut(s)	22, 393, 426
CviAII	CATG	5 cut(s)	67, 110, 134, 256, 506
CviJI	RGCY	6 cut(s)	40, 108, 322, 361, 443, 468
CviKI_1	RGCY	6 cut(s)	40, 108, 322, 361, 443, 468
CviQI	GTAC	3 cut(s)	22, 393, 426
DdeI	CTNAG	1 cut(s)	363
DpnI	GATC	1 cut(s)	198
DpnII	GATC	1 cut(s)	196
DraIII	CACNNNGTG	2 cut(s)	158, 434
DrdI	GACNNNNNNGTC	1 cut(s)	273
DseDI	GACNNNNNNGTC	1 cut(s)	273
EaeI	YGGCCR	1 cut(s)	106
Eco147I	AGGCCT	1 cut(s)	361
Eco81I	CCTNAGG	1 cut(s)	363
EcoRI	GAATTC	1 cut(s)	58
EcoRII	CCWGG	4 cut(s)	118, 271, 316, 379
FaeI	CATG	5 cut(s)	70, 113, 137, 259, 509
FaiI	YATR	9 cut(s)	68, 102, 111, 135, 193, 195, 231, 257, 507
FalI	AAGNNNNNCTT	2 cut(s)	502, 534
FaqI	GGGAC	3 cut(s)	69, 252, 279
FatI	CATG	5 cut(s)	66, 109, 133, 255, 505
FauI	CCCGC	2 cut(s)	87, 254
FauNDI	CATATG	1 cut(s)	193
Fnu4HI	GCNGC	2 cut(s)	38, 41
FokI	GGATG	3 cut(s)	67, 175, 211
Fsp4HI	GCNGC	2 cut(s)	38, 41
FspBI	CTAG	1 cut(s)	249
FspI	TGCGCA	1 cut(s)	216
GlaI	GCGC	2 cut(s)	77, 216
GluI	GCNGC	2 cut(s)	38, 41
HaeII	RGCGCY	1 cut(s)	79
HaeIII	GGCC	3 cut(s)	108, 322, 361
HapII	CCGG	1 cut(s)	63
HgaI	GACGC	2 cut(s)	17, 71
HhaI	GCGC	2 cut(s)	78, 217
Hin1II	CATG	5 cut(s)	70, 113, 137, 259, 509
Hin6I	GCGC	2 cut(s)	76, 215
HinP1I	GCGC	2 cut(s)	76, 215
HinfI	GANTC	5 cut(s)	95, 176, 483, 497, 534
HpaII	CCGG	1 cut(s)	63
Hpy166II	GTNNAC	3 cut(s)	152, 395, 428
Hpy188III	TCNNGA	2 cut(s)	86, 501
Hpy8I	GTNNAC	3 cut(s)	152, 395, 428
Hpy99I	CGWCG	3 cut(s)	32, 52, 435
HpyAV	CCTTC	2 cut(s)	383, 401
HpyCH4III	ACNGT	2 cut(s)	243, 425
HpyCH4IV	ACGT	1 cut(s)	433
HpyF10VI	GCNNNNNNNGC	1 cut(s)	214
HpyF3I	CTNAG	1 cut(s)	363
HpySE526I	ACGT	1 cut(s)	433
Hsp92II	CATG	5 cut(s)	70, 113, 137, 259, 509
HspAI	GCGC	2 cut(s)	76, 215
Kzo9I	GATC	1 cut(s)	196
Lsp1109I	GCAGC	1 cut(s)	49
LweI	GCATC	1 cut(s)	197
MabI	ACCWGGT	1 cut(s)	271
MaeI	CTAG	1 cut(s)	249
MaeII	ACGT	1 cut(s)	433
MalI	GATC	1 cut(s)	198
MbiI	CCGCTC	1 cut(s)	261
MboI	GATC	1 cut(s)	196
MboII	GAAGA	2 cut(s)	149, 514
MlsI	TGGCCA	1 cut(s)	108
MluCI	AATT	2 cut(s)	58, 538
MluNI	TGGCCA	1 cut(s)	108
MlyI	GAGTC	2 cut(s)	170, 477
MnlI	CCTC	7 cut(s)	12, 54, 140, 327, 351, 358, 387
Mox20I	TGGCCA	1 cut(s)	108
MscI	TGGCCA	1 cut(s)	108
MseI	TTAA	1 cut(s)	183
MslI	CAYNNNNRTG	1 cut(s)	138
Msp20I	TGGCCA	1 cut(s)	108
MspI	CCGG	1 cut(s)	63
MspR9I	CCNGG	4 cut(s)	120, 273, 318, 381
MvaI	CCWGG	4 cut(s)	120, 273, 318, 381
MvnI	CGCG	1 cut(s)	82
MwoI	GCNNNNNNNGC	1 cut(s)	214
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	1 cut(s)	196
NlaIII	CATG	5 cut(s)	70, 113, 137, 259, 509
NlaIV	GGNNCC	1 cut(s)	369
NsbI	TGCGCA	1 cut(s)	216
NspI	RCATGY	1 cut(s)	509
PceI	AGGCCT	1 cut(s)	361
PciI	ACATGT	1 cut(s)	505
PcsI	WCGNNNNNNNCGW	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	95, 497, 534
PflMI	CCANNNNNTGG	1 cut(s)	464
PkrI	GCNGC	2 cut(s)	39, 42
PleI	GAGTC	2 cut(s)	170, 477
PpsI	GAGTC	2 cut(s)	170, 477
PscI	ACATGT	1 cut(s)	505
Psp6I	CCWGG	4 cut(s)	118, 271, 316, 379
PspGI	CCWGG	4 cut(s)	118, 271, 316, 379
PspN4I	GGNNCC	1 cut(s)	369
PspPI	GGNCC	1 cut(s)	320
RsaI	GTAC	3 cut(s)	23, 394, 427
RsaNI	GTAC	3 cut(s)	22, 393, 426
RseI	CAYNNNNRTG	1 cut(s)	138
SaqAI	TTAA	1 cut(s)	183
SatI	GCNGC	2 cut(s)	38, 41
Sau3AI	GATC	1 cut(s)	196
Sau96I	GGNCC	1 cut(s)	320
SchI	GAGTC	2 cut(s)	170, 477
ScrFI	CCNGG	4 cut(s)	120, 273, 318, 381
SetI	ASST	9 cut(s)	23, 117, 151, 207, 274, 319, 369, 436, 445
SexAI	ACCWGGT	1 cut(s)	271
SfaNI	GCATC	1 cut(s)	197
SfcI	CTRYAG	1 cut(s)	229
SmiMI	CAYNNNNRTG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	58, 538
SseBI	AGGCCT	1 cut(s)	361
SsiI	CCGC	3 cut(s)	41, 80, 261
SspMI	CTAG	1 cut(s)	249
StuI	AGGCCT	1 cut(s)	361
StyD4I	CCNGG	4 cut(s)	118, 271, 316, 379
TaaI	ACNGT	2 cut(s)	243, 425
TaiI	ACGT	1 cut(s)	436
TasI	AATT	2 cut(s)	58, 538
TatI	WGTACW	2 cut(s)	392, 425
TauI	GCSGC	1 cut(s)	43
TfiI	GAWTC	3 cut(s)	95, 497, 534
Tru1I	TTAA	1 cut(s)	183
Tru9I	TTAA	1 cut(s)	183
TseI	GCWGC	1 cut(s)	37
TspDTI	ATGAA	2 cut(s)	71, 150
TspGWI	ACGGA	3 cut(s)	36, 45, 146
Van91I	CCANNNNNTGG	1 cut(s)	464
XapI	RAATTY	1 cut(s)	58
XceI	RCATGY	1 cut(s)	509
XcmI	CCANNNNNNNNNTGG	1 cut(s)	116
XspI	CTAG	1 cut(s)	249

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.