pycom07g26810

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0001021
Physical Location & Seq
Forward (+)
26721285 .. 26724580
3296 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g26810.6

Sequence Viewer

Length: 708 bp
ATGGCGGACGCGTACTGGAGGTACAGCGACGGTCGACAACCGCCGCCCTCGGCGATGAATTCAGTCGTTGGAAAGCGTCCTCGCTCCGATTACGATACCCAGGGTGGTCAAGACCTCCCTAACTATTATCCCCATGAAGATGATAGAGGTTCTATGCGAGGAATTAGAGATACTGACTCCATAAATGCGTCGTATGATCGCTACCTGCGCAATGCGCAAATGTCATCATATAGCGGGGGACAATCTGCTAGAAACATGAGTGGAGGACCACCTGGTCGTGCTGTTGAGGATCCACACATGATGGGAATTGGGGGTGTTGACCCTGGGGCACCTGCAAAAGATAGGGTCTTAGGAATGGGAAGTGGACGGCCTGATGCTCCCCTTCCTCCTGGTGCTACCAGTACACTATTTGTGGAGGGATTGCCTCCCAACTGTACAAGACGTGAAGTAGCTCATATCTTTCGCCCTTTCGTTGGCTACAAGGAAGTGAGACTCGTGAGCAAGGAATCCAGACATCCTGGAGGAGATCCACTGGTACTTTGTTTTGTTGATTTTGTGAGTCCGGCCCATGCAGCAACTGCTATGGATGCATTGCAAGGTTATAAATTCGATGAGCATGACCGTGACTCAGTCAATTTAAGGTTGCAATTCGCTCGCTATCCTGGTGCGAGGTCAGGTGGTGGGCACCGAGGGAAGCGACTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

236

Amino Acids

25.58

Weight (kDa)

8.86

Isoelectric Point (pI)

52.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AarI CACCTGC 1 cut(s) 340
AasI GACNNNNNNGTC 1 cut(s) 273
Acc16I TGCGCA 2 cut(s) 209, 216
Acc36I ACCTGC 2 cut(s) 213, 340
AccB1I GGYRCC 2 cut(s) 328, 684
AccI GTMKAC 1 cut(s) 34
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 5, 41, 44, 234
AclWI GGATC 3 cut(s) 284, 297, 521
AcsI RAATTY 2 cut(s) 58, 605
AfaI GTAC 5 cut(s) 14, 23, 403, 436, 537
AfiI CCNNNNNNNGG 1 cut(s) 473
AflIII ACRYGT 1 cut(s) 9
AjiI CACGTC 1 cut(s) 443
AjnI CCWGG 6 cut(s) 99, 271, 322, 388, 517, 661
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 3 cut(s) 284, 297, 521
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 2 cut(s) 368, 564
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 2 cut(s) 58, 605
AspLEI GCGC 2 cut(s) 210, 217
AspS9I GGNCC 2 cut(s) 266, 565
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 2 cut(s) 331, 687
BamHI GGATCC 1 cut(s) 289
BanI GGYRCC 2 cut(s) 328, 684
BauI CACGAG 1 cut(s) 494
BbvI GCAGC 1 cut(s) 584
BccI CCATC 1 cut(s) 295
BceAI ACGGC 1 cut(s) 383
BcgI CGANNNNNNTGC 2 cut(s) 635, 669
BciT130I CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 1 cut(s) 249
BfuAI ACCTGC 2 cut(s) 213, 340
BisI GCNGC 2 cut(s) 44, 573
BlsI GCNGC 2 cut(s) 45, 574
Bme1390I CCNGG 6 cut(s) 101, 273, 324, 390, 519, 663
Bme18I GGWCC 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 266, 565
BmiI GGNNCC 3 cut(s) 291, 330, 686
BmrFI CCNGG 6 cut(s) 101, 273, 324, 390, 519, 663
BmsI GCATC 2 cut(s) 364, 577
BpmI CTGGAG 2 cut(s) 37, 540
BsaJI CCNNGG 6 cut(s) 48, 99, 100, 322, 323, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse1I ACTGG 3 cut(s) 20, 399, 537
Bse3DI GCAATG 2 cut(s) 217, 590
BseBI CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
BseDI CCNNGG 6 cut(s) 48, 99, 100, 322, 323, 688
BseGI GGATG 2 cut(s) 514, 592
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 2 cut(s) 217, 590
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 3 cut(s) 20, 399, 537
BseRI GAGGAG 1 cut(s) 537
BseSI GKGCMC 2 cut(s) 331, 687
BseXI GCAGC 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 34
BshFI GGCC 2 cut(s) 370, 566
BshNI GGYRCC 2 cut(s) 328, 684
BsiEI CGRYCG 1 cut(s) 34
BsiSI CCGG 1 cut(s) 563
BslFI GGGAC 1 cut(s) 252
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 1 cut(s) 484
BsmFI GGGAC 1 cut(s) 252
BsnI GGCC 2 cut(s) 370, 566
Bsp1286I GDGCHC 2 cut(s) 331, 687
Bsp1407I TGTACA 1 cut(s) 434
Bsp143I GATC 3 cut(s) 196, 289, 526
BspACI CCGC 4 cut(s) 5, 41, 44, 234
BspANI GGCC 2 cut(s) 370, 566
BspCNI CTCAG 1 cut(s) 641
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 291, 330, 686
BspMI ACCTGC 2 cut(s) 213, 340
BspPI GGATC 3 cut(s) 284, 297, 521
BspT107I GGYRCC 2 cut(s) 328, 684
BsrDI GCAATG 2 cut(s) 217, 590
BsrGI TGTACA 1 cut(s) 434
BsrI ACTGG 3 cut(s) 20, 399, 537
BssECI CCNNGG 6 cut(s) 48, 99, 100, 322, 323, 688
BssMI GATC 3 cut(s) 196, 289, 526
BssSI CACGAG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
Bst4CI ACNGT 3 cut(s) 32, 434, 623
BstAPI GCANNNNNTGC 1 cut(s) 578
BstAUI TGTACA 1 cut(s) 434
BstC8I GCNNGC 1 cut(s) 655
BstDEI CTNAG 2 cut(s) 349, 628
BstF5I GGATG 2 cut(s) 514, 592
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 2 cut(s) 210, 217
BstKTI GATC 3 cut(s) 199, 292, 529
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 3 cut(s) 196, 289, 526
BstMCI CGRYCG 1 cut(s) 34
BstMWI GCNNNNNNNGC 5 cut(s) 207, 214, 572, 578, 587
BstNI CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
BstSCI CCNGG 6 cut(s) 99, 271, 322, 388, 517, 661
BstSLI GKGCMC 2 cut(s) 331, 687
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 584
BstX2I RGATCY 2 cut(s) 289, 526
BstYI RGATCY 2 cut(s) 289, 526
BsuRI GGCC 2 cut(s) 370, 566
BtgZI GCGATG 1 cut(s) 68
BtrI CACGTC 1 cut(s) 443
BtsCI GGATG 2 cut(s) 514, 592
BtsIMutI CAGTG 1 cut(s) 530
BveI ACCTGC 2 cut(s) 213, 340
Cac8I GCNNGC 1 cut(s) 655
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 2 cut(s) 210, 217
Cfr13I GGNCC 2 cut(s) 266, 565
CseI GACGC 3 cut(s) 17, 65, 177
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 5 cut(s) 13, 22, 402, 435, 536
CviAII CATG 5 cut(s) 134, 256, 298, 569, 617
CviJI RGCY 4 cut(s) 370, 452, 477, 566
CviKI_1 RGCY 4 cut(s) 370, 452, 477, 566
CviQI GTAC 5 cut(s) 13, 22, 402, 435, 536
DdeI CTNAG 2 cut(s) 349, 628
DpnI GATC 3 cut(s) 198, 291, 528
DpnII GATC 3 cut(s) 196, 289, 526
DrdI GACNNNNNNGTC 1 cut(s) 273
DseDI GACNNNNNNGTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 6 cut(s) 99, 271, 322, 388, 517, 661
EcoT22I ATGCAT 1 cut(s) 592
FaeI CATG 5 cut(s) 137, 259, 301, 572, 620
FaqI GGGAC 1 cut(s) 252
FatI CATG 5 cut(s) 133, 255, 297, 568, 616
FauI CCCGC 1 cut(s) 227
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 2 cut(s) 44, 573
FokI GGATG 2 cut(s) 501, 599
Fsp4HI GCNGC 2 cut(s) 44, 573
FspBI CTAG 1 cut(s) 249
FspI TGCGCA 2 cut(s) 209, 216
GlaI GCGC 2 cut(s) 209, 216
GluI GCNGC 2 cut(s) 44, 573
GsuI CTGGAG 2 cut(s) 37, 540
HaeIII GGCC 2 cut(s) 370, 566
HapII CCGG 1 cut(s) 563
HgaI GACGC 3 cut(s) 17, 65, 177
HhaI GCGC 2 cut(s) 210, 217
Hin1II CATG 5 cut(s) 137, 259, 301, 572, 620
Hin6I GCGC 2 cut(s) 208, 215
HinP1I GCGC 2 cut(s) 208, 215
HincII GTYRAC 2 cut(s) 35, 319
HindII GTYRAC 2 cut(s) 35, 319
HinfI GANTC 5 cut(s) 176, 492, 506, 559, 626
HpaII CCGG 1 cut(s) 563
Hpy166II GTNNAC 4 cut(s) 35, 319, 365, 404
Hpy188I TCNGA 1 cut(s) 88
Hpy188III TCNNGA 3 cut(s) 110, 496, 510
Hpy8I GTNNAC 4 cut(s) 35, 319, 365, 404
Hpy99I CGWCG 2 cut(s) 32, 193
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 3 cut(s) 32, 434, 623
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 5 cut(s) 335, 572, 590, 595, 646
HpyF10VI GCNNNNNNNGC 5 cut(s) 207, 214, 572, 578, 587
HpyF3I CTNAG 2 cut(s) 349, 628
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 5 cut(s) 137, 259, 301, 572, 620
HspAI GCGC 2 cut(s) 208, 215
Kzo9I GATC 3 cut(s) 196, 289, 526
LmnI GCTCC 2 cut(s) 89, 382
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 2 cut(s) 364, 577
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 1 cut(s) 249
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 1 cut(s) 623
MalI GATC 3 cut(s) 198, 291, 528
MboI GATC 3 cut(s) 196, 289, 526
MboII GAAGA 1 cut(s) 149
MflI RGATCY 2 cut(s) 289, 526
MhlI GDGCHC 2 cut(s) 331, 687
MluCI AATT 6 cut(s) 58, 162, 306, 605, 634, 647
MluI ACGCGT 1 cut(s) 9
MlyI GAGTC 4 cut(s) 170, 486, 568, 620
MmeI TCCRAC 1 cut(s) 49
Mph1103I ATGCAT 1 cut(s) 592
MseI TTAA 1 cut(s) 638
MslI CAYNNNNRTG 2 cut(s) 138, 621
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 6 cut(s) 101, 273, 324, 390, 519, 663
MvaI CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 5 cut(s) 207, 214, 572, 578, 587
NdeII GATC 3 cut(s) 196, 289, 526
NlaIII CATG 5 cut(s) 137, 259, 301, 572, 620
NlaIV GGNNCC 3 cut(s) 291, 330, 686
NmeAIII GCCGAG 1 cut(s) 29
NmuCI GTSAC 1 cut(s) 623
NsbI TGCGCA 2 cut(s) 209, 216
NsiI ATGCAT 1 cut(s) 592
PaqCI CACCTGC 1 cut(s) 340
PasI CCCWGGG 2 cut(s) 100, 323
PfeI GAWTC 1 cut(s) 506
PflFI GACNNNGTC 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 2 cut(s) 45, 574
PleI GAGTC 4 cut(s) 170, 486, 567, 620
PpsI GAGTC 4 cut(s) 170, 486, 567, 620
PsiI TTATAA 1 cut(s) 603
Psp6I CCWGG 6 cut(s) 99, 271, 322, 388, 517, 661
PspGI CCWGG 6 cut(s) 99, 271, 322, 388, 517, 661
PspN4I GGNNCC 3 cut(s) 291, 330, 686
PspPI GGNCC 2 cut(s) 266, 565
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 2 cut(s) 289, 526
PsyI GACNNNGTC 1 cut(s) 629
RsaI GTAC 5 cut(s) 14, 23, 403, 436, 537
RsaNI GTAC 5 cut(s) 13, 22, 402, 435, 536
RseI CAYNNNNRTG 2 cut(s) 138, 621
SalI GTCGAC 1 cut(s) 33
SaqAI TTAA 1 cut(s) 638
SatI GCNGC 2 cut(s) 44, 573
Sau3AI GATC 3 cut(s) 196, 289, 526
Sau96I GGNCC 2 cut(s) 266, 565
SchI GAGTC 4 cut(s) 170, 486, 568, 620
ScrFI CCNGG 6 cut(s) 101, 273, 324, 390, 519, 663
SduI GDGCHC 2 cut(s) 331, 687
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 2 cut(s) 364, 577
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 2 cut(s) 138, 621
Sse9I AATT 6 cut(s) 58, 162, 306, 605, 634, 647
SsiI CCGC 4 cut(s) 5, 41, 44, 234
SspMI CTAG 1 cut(s) 249
StyD4I CCNGG 6 cut(s) 99, 271, 322, 388, 517, 661
TaaI ACNGT 3 cut(s) 32, 434, 623
TaiI ACGT 1 cut(s) 445
TaqI TCGA 2 cut(s) 34, 609
TasI AATT 6 cut(s) 58, 162, 306, 605, 634, 647
TatI WGTACW 2 cut(s) 401, 434
TauI GCSGC 1 cut(s) 46
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 1 cut(s) 638
Tru9I TTAA 1 cut(s) 638
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 1 cut(s) 623
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 1 cut(s) 623
TspDTI ATGAA 2 cut(s) 71, 150
TspRI CASTG 1 cut(s) 537
Tth111I GACNNNGTC 1 cut(s) 629
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 2 cut(s) 58, 605
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 1 cut(s) 249
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.