Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0001021

Physical Location & Seq

Genomic Coordinates Reverse (-)

36740868 .. 36744636

Gene Structure 3769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G018500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 696 bp

ATGGCGAACAGCCTCTGGAACCGGCAGCGGCAACTGCTTCCGTCGGGTGGCGTTAAACGACCTCGTTCTGACTACGGTCATGAGATGCGTAGCTATTTAGCACGGGATGATGATCTTGGTGGTCCTAGGGCTGTAAAGGATACAAAATCAATTGGATCAGCATATGACCGTTATCTTCAAAATGGGCAAGTGTCTTCAGATACCATGGTTGGAGTTGCATTGGGGAGGCCTGTCAGTGGTGGAATGGCTGATCATTCTATGATTGGTCGCCCTGGGGCTGTTGCTTCGGATTTAATTAGTGGTCGAAATATTAGTCTTGCTCAGCTCCCAGTGGATGCAATGCCTAGACTAGCACCTGAACGTGAAACAGCTCCTTTACCCCCAGATGCTACCAACACTTTATACATTGAAGGACTTCCTCCTGACAGCACGAGGAGGGAAGTAGCTCATATTTTTCGCCCCTTTGTGGGATATAAAGAAGTGAGGCTTGTGAGCAAAGAGTCCAAACTTCGTGGTGGTGATCCCCTTATCCTTTGTTTTGTGGATTTTGTAAATCCAGCCTGTGCTGCAACTGCCATGAGTGCTTTGCAAGGTTATAAAATGGATGAACACAACCCCGATTCTAACTACTTGCGGCTGCAGTTTTCTCGATTCCCAGGTCCAAGGTCTGGACATGGAACCCGTAGTAAGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RRM_1

Protein Analysis

231

Amino Acids

25.28

Weight (kDa)

9.57

Isoelectric Point (pI)

57.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	134 - 204	1.1e-09	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001021)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21320 AT1G21326 AT1G76940 AT1G76940 AT1G76940
fragaria_vesca	FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_2g14240 FvH4_7g32221 FvH4_7g32221
malus_domestica	MD01G1224900.v1.1 MD05G1020700.v1.1 MD07G1295500.v1.1 MD10G1021500.v1.1 MD10G1021600.v1.1
prunus_persica	Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.2G315000_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1 Prupe.8G024700_v2.0.a1
pyrus_communis	pycom01g23350 pycom05g01200 pycom07g26810 pycom10g01470 pycom10g01480
rosa_chinensis	RchiOBHm_Chr1g0381871 RchiOBHm_Chr6g0276391
rosa_laevigata	RLG00000013397 RLG00000026202
rosa_multiflora	Rmu_sc0004126.1_g000019 Rmu_sc0004248.1_g000007 Rmu_sc0010238.1_g000008
rosa_roxburghii	Rroxscaffold_4G00278360 Rroxscaffold_7G00192260
rosa_rugosa	Rorug01G0432000 Rorug06G0101200
rosa_samantha	Rh1AG455100 Rh1BG412300 Rh1CG427000 Rh1DG444600 Rh6AG211900 Rh6BG216100 Rh6CG218400 Rh6CG218800 Rh6DG208300
rosa_wichuraiana	Rw1G041390 Rw1G041460 Rw6G018500 Rw6G018520

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	597
AccB7I	CCANNNNNTGG	1 cut(s)	668
AciI	CCGC	2 cut(s)	28, 634
AclWI	GGATC	2 cut(s)	163, 515
AcuI	CTGAAG	1 cut(s)	180
AfiI	CCNNNNNNNGG	5 cut(s)	47, 236, 466, 467, 668
AgsI	TTSAA	2 cut(s)	179, 410
AjnI	CCWGG	2 cut(s)	271, 655
AluBI	AGCT	4 cut(s)	93, 325, 371, 446
AluI	AGCT	4 cut(s)	93, 325, 371, 446
AlwI	GGATC	2 cut(s)	163, 515
AlwNI	CAGNNNCTG	1 cut(s)	15
AoxI	GGCC	1 cut(s)	227
ApeKI	GCWGC	3 cut(s)	25, 566, 637
ArsI	GACNNNNNNTTYG	2 cut(s)	298, 330
Asp700I	GAANNNNTTC	1 cut(s)	414
AspA2I	CCTAGG	1 cut(s)	125
AspS9I	GGNCC	2 cut(s)	122, 659
AsuHPI	GGTGA	1 cut(s)	530
AvaII	GGWCC	2 cut(s)	122, 659
AvrII	CCTAGG	1 cut(s)	125
BaeI	ACNNNNGTAYC	2 cut(s)	192, 225
BauI	CACGAG	1 cut(s)	430
BbsI	GAAGAC	1 cut(s)	186
BbvI	GCAGC	3 cut(s)	37, 553, 624
BcgI	CGANNNNNNTGC	2 cut(s)	629, 663
BciT130I	CCWGG	2 cut(s)	273, 657
BciVI	GTATCC	1 cut(s)	133
BclI	TGATCA	1 cut(s)	250
BfaI	CTAG	3 cut(s)	126, 345, 350
BfmI	CTRYAG	1 cut(s)	638
BfuI	GTATCC	1 cut(s)	133
BisI	GCNGC	5 cut(s)	26, 29, 567, 635, 638
BlnI	CCTAGG	1 cut(s)	125
BlpI	GCTNAGC	1 cut(s)	321
BlsI	GCNGC	5 cut(s)	27, 30, 568, 636, 639
Bme1390I	CCNGG	2 cut(s)	273, 657
Bme18I	GGWCC	2 cut(s)	122, 659
BmgT120I	GGNCC	2 cut(s)	122, 659
BmiI	GGNNCC	2 cut(s)	20, 679
BmrFI	CCNGG	2 cut(s)	273, 657
BmrI	ACTGGG	1 cut(s)	323
BmsI	GCATC	3 cut(s)	75, 325, 376
BmuI	ACTGGG	1 cut(s)	323
BoxI	GACNNNNGTC	1 cut(s)	75
BpiI	GAAGAC	1 cut(s)	186
Bpu1102I	GCTNAGC	1 cut(s)	321
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	6 cut(s)	125, 204, 271, 272, 655, 662
Bsc4I	CCNNNNNNNGG	5 cut(s)	47, 236, 466, 467, 668
Bse118I	RCCGGY	1 cut(s)	21
Bse1I	ACTGG	1 cut(s)	329
Bse3DI	GCAATG	1 cut(s)	345
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	273, 657
BseDI	CCNNGG	6 cut(s)	125, 204, 271, 272, 655, 662
BseGI	GGATG	3 cut(s)	112, 340, 610
BseJI	GATNNNNATC	1 cut(s)	111
BseLI	CCNNNNNNNGG	5 cut(s)	47, 236, 466, 467, 668
BseMI	GCAATG	1 cut(s)	345
BseMII	CTCAG	1 cut(s)	335
BseNI	ACTGG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	448
BseXI	GCAGC	3 cut(s)	37, 553, 624
BshFI	GGCC	1 cut(s)	229
BsiSI	CCGG	1 cut(s)	22
BslI	CCNNNNNNNGG	5 cut(s)	47, 236, 466, 467, 668
BsnI	GGCC	1 cut(s)	229
Bsp143I	GATC	4 cut(s)	112, 155, 250, 520
Bsp1720I	GCTNAGC	1 cut(s)	321
Bsp19I	CCATGG	1 cut(s)	204
BspACI	CCGC	2 cut(s)	28, 634
BspANI	GGCC	1 cut(s)	229
BspCNI	CTCAG	1 cut(s)	334
BspHI	TCATGA	1 cut(s)	79
BspLI	GGNNCC	2 cut(s)	20, 679
BspMAI	CTGCAG	1 cut(s)	642
BspPI	GGATC	2 cut(s)	163, 515
BsrDI	GCAATG	1 cut(s)	345
BsrFI	RCCGGY	1 cut(s)	21
BsrI	ACTGG	1 cut(s)	329
BssAI	RCCGGY	1 cut(s)	21
BssECI	CCNNGG	6 cut(s)	125, 204, 271, 272, 655, 662
BssMI	GATC	4 cut(s)	112, 155, 250, 520
BssSI	CACGAG	1 cut(s)	430
BssT1I	CCWWGG	3 cut(s)	125, 204, 662
Bst2BI	CACGAG	1 cut(s)	430
Bst2UI	CCWGG	2 cut(s)	273, 657
Bst4CI	ACNGT	2 cut(s)	77, 170
BstDEI	CTNAG	1 cut(s)	321
BstDSI	CCRYGG	1 cut(s)	204
BstF5I	GGATG	3 cut(s)	112, 340, 610
BstKTI	GATC	4 cut(s)	115, 158, 253, 523
BstMBI	GATC	4 cut(s)	112, 155, 250, 520
BstMWI	GCNNNNNNNGC	4 cut(s)	34, 566, 572, 581
BstNI	CCWGG	2 cut(s)	273, 657
BstPAI	GACNNNNGTC	1 cut(s)	75
BstSCI	CCNGG	2 cut(s)	271, 655
BstSFI	CTRYAG	1 cut(s)	638
BstV1I	GCAGC	3 cut(s)	37, 553, 624
BstV2I	GAAGAC	1 cut(s)	186
BsuI	GTATCC	1 cut(s)	133
BsuRI	GGCC	1 cut(s)	229
BtgI	CCRYGG	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	112, 340, 610
BtsIMutI	CAGTG	2 cut(s)	241, 336
CaiI	CAGNNNCTG	1 cut(s)	15
CciI	TCATGA	1 cut(s)	79
Cfr10I	RCCGGY	1 cut(s)	21
Cfr13I	GGNCC	2 cut(s)	122, 659
CspCI	CAANNNNNGTGG	2 cut(s)	493, 528
CviAII	CATG	4 cut(s)	80, 205, 577, 674
DdeI	CTNAG	1 cut(s)	321
DpnI	GATC	4 cut(s)	114, 157, 252, 522
DpnII	GATC	4 cut(s)	112, 155, 250, 520
Eco130I	CCWWGG	3 cut(s)	125, 204, 662
Eco147I	AGGCCT	1 cut(s)	229
Eco47I	GGWCC	2 cut(s)	122, 659
Eco57I	CTGAAG	1 cut(s)	180
EcoRII	CCWGG	2 cut(s)	271, 655
EcoT14I	CCWWGG	3 cut(s)	125, 204, 662
ErhI	CCWWGG	3 cut(s)	125, 204, 662
FaeI	CATG	4 cut(s)	83, 208, 580, 677
FalI	AAGNNNNNCTT	2 cut(s)	471, 503
FatI	CATG	4 cut(s)	79, 204, 576, 673
FauNDI	CATATG	1 cut(s)	163
FbaI	TGATCA	1 cut(s)	250
Fnu4HI	GCNGC	5 cut(s)	26, 29, 567, 635, 638
FokI	GGATG	3 cut(s)	119, 347, 617
Fsp4HI	GCNGC	5 cut(s)	26, 29, 567, 635, 638
FspBI	CTAG	3 cut(s)	126, 345, 350
GluI	GCNGC	5 cut(s)	26, 29, 567, 635, 638
HaeIII	GGCC	1 cut(s)	229
HapII	CCGG	1 cut(s)	22
Hin1II	CATG	4 cut(s)	83, 208, 580, 677
HinfI	GANTC	3 cut(s)	500, 620, 651
HpaII	CCGG	1 cut(s)	22
HphI	GGTGA	1 cut(s)	530
Hpy188I	TCNGA	3 cut(s)	70, 199, 289
Hpy188III	TCNNGA	5 cut(s)	16, 80, 422, 648, 669
Hpy99I	CGWCG	1 cut(s)	46
HpyAV	CCTTC	1 cut(s)	404
HpyCH4III	ACNGT	2 cut(s)	77, 170
HpyCH4IV	ACGT	1 cut(s)	361
HpyCH4V	TGCA	5 cut(s)	218, 338, 569, 589, 640
HpyF10VI	GCNNNNNNNGC	4 cut(s)	34, 566, 572, 581
HpyF3I	CTNAG	1 cut(s)	321
HpySE526I	ACGT	1 cut(s)	361
Hsp92II	CATG	4 cut(s)	83, 208, 580, 677
Ksp22I	TGATCA	1 cut(s)	250
Kzo9I	GATC	4 cut(s)	112, 155, 250, 520
LmnI	GCTCC	2 cut(s)	330, 376
Lsp1109I	GCAGC	3 cut(s)	37, 553, 624
LweI	GCATC	3 cut(s)	75, 325, 376
MaeI	CTAG	3 cut(s)	126, 345, 350
MaeII	ACGT	1 cut(s)	361
MalI	GATC	4 cut(s)	114, 157, 252, 522
MboI	GATC	4 cut(s)	112, 155, 250, 520
MboII	GAAGA	2 cut(s)	167, 186
MfeI	CAATTG	1 cut(s)	150
MluCI	AATT	2 cut(s)	150, 294
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	190
MnlI	CCTC	7 cut(s)	23, 72, 219, 426, 429, 429, 477
MroXI	GAANNNNTTC	1 cut(s)	414
MseI	TTAA	2 cut(s)	54, 293
MspA1I	CMGCKG	1 cut(s)	28
MspI	CCGG	1 cut(s)	22
MspR9I	CCNGG	2 cut(s)	273, 657
MunI	CAATTG	1 cut(s)	150
MvaI	CCWGG	2 cut(s)	273, 657
MwoI	GCNNNNNNNGC	4 cut(s)	34, 566, 572, 581
NcoI	CCATGG	1 cut(s)	204
NdeI	CATATG	1 cut(s)	163
NdeII	GATC	4 cut(s)	112, 155, 250, 520
NlaIII	CATG	4 cut(s)	83, 208, 580, 677
NlaIV	GGNNCC	2 cut(s)	20, 679
PagI	TCATGA	1 cut(s)	79
PasI	CCCWGGG	1 cut(s)	272
PceI	AGGCCT	1 cut(s)	229
PdmI	GAANNNNTTC	1 cut(s)	414
PfeI	GAWTC	2 cut(s)	620, 651
PflMI	CCANNNNNTGG	1 cut(s)	668
PkrI	GCNGC	5 cut(s)	27, 30, 568, 636, 639
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PshAI	GACNNNNGTC	1 cut(s)	75
PsiI	TTATAA	1 cut(s)	597
Psp6I	CCWGG	2 cut(s)	271, 655
PspGI	CCWGG	2 cut(s)	271, 655
PspN4I	GGNNCC	2 cut(s)	20, 679
PspPI	GGNCC	2 cut(s)	122, 659
PstI	CTGCAG	1 cut(s)	642
PstNI	CAGNNNCTG	1 cut(s)	15
SaqAI	TTAA	2 cut(s)	54, 293
SatI	GCNGC	5 cut(s)	26, 29, 567, 635, 638
Sau3AI	GATC	4 cut(s)	112, 155, 250, 520
Sau96I	GGNCC	2 cut(s)	122, 659
SchI	GAGTC	1 cut(s)	509
ScrFI	CCNGG	2 cut(s)	273, 657
SfaNI	GCATC	3 cut(s)	75, 325, 376
SfcI	CTRYAG	1 cut(s)	638
SinI	GGWCC	2 cut(s)	122, 659
Sse9I	AATT	2 cut(s)	150, 294
SseBI	AGGCCT	1 cut(s)	229
SsiI	CCGC	2 cut(s)	28, 634
SspI	AATATT	1 cut(s)	310
SspMI	CTAG	3 cut(s)	126, 345, 350
StuI	AGGCCT	1 cut(s)	229
StyD4I	CCNGG	2 cut(s)	271, 655
StyI	CCWWGG	3 cut(s)	125, 204, 662
TaaI	ACNGT	2 cut(s)	77, 170
TaiI	ACGT	1 cut(s)	364
TaqI	TCGA	2 cut(s)	304, 649
TasI	AATT	2 cut(s)	150, 294
TauI	GCSGC	2 cut(s)	31, 637
TfiI	GAWTC	2 cut(s)	620, 651
Tru1I	TTAA	2 cut(s)	54, 293
Tru9I	TTAA	2 cut(s)	54, 293
TscAI	CASTG	2 cut(s)	241, 336
TseI	GCWGC	3 cut(s)	25, 566, 637
TspDTI	ATGAA	1 cut(s)	621
TspGWI	ACGGA	1 cut(s)	30
TspRI	CASTG	2 cut(s)	241, 336
Van91I	CCANNNNNTGG	1 cut(s)	668
VpaK11BI	GGWCC	2 cut(s)	122, 659
XmaJI	CCTAGG	1 cut(s)	125
XmnI	GAANNNNTTC	1 cut(s)	414
XspI	CTAG	3 cut(s)	126, 345, 350

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.