pycom01g23350

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
OG0001021
Physical Location & Seq
Forward (+)
20701997 .. 20705298
3302 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g23350.1

Sequence Viewer

Length: 708 bp
ATGGCGGACGCGTATTGGAGGTACAGCGATGGTCGACAACCGCCGGCCTCGGCGATGAATTCAGTCGTCGGAAAGCGTCCTCGCTCCGAATACGATGCCCAGGGTGGTCACGACCTCCCTAACTATTATCCCCAAGAAGACGATAGAGGTTCTATCCGAGGAATTAGAGATACCGACTCCATAAATGCGTCGTATGATCGTTACCTGCGCAGTGCGCAAATTTCATCATATAGCGGAGGCCAGTCTGCTAGAAACATGAGTGGGGGACCACCTGGTCGTGCTGTTGATGATCCACGCATGATGGGAATTGGGGGTGTTGACCCAGGGGAACCTGTTAAAGATAGGGTCTTAGGAATGGGAAGTGGACGGCCTGACGCTCCCCTTCCTCCTGGTGCTACCAGTACGCTATTTGTGGAGGGATTGCCTCCCAACTGTACTAGACGTGAAGTAGCTCATATCTTTCGCCCTTTCGTTGGCTACAAGGAAGTGAGACTCGTGAGCAAGGAATCAAGACATCCTGGAGGAGATCCGCTGATACTTTGTTTTGTTGATTTTTTGAGTCCGGCCCATGCAGCGACTGCTATGGATGCATTGCAAGGTTATAAATTCGATGAGCATGACCGTGACTCAGTCAACTTAAGGTTGCAATTCGCTCGCTATCCTGGTGCGAGGTCAGGTGGTGGGCACCGAGGGAAGCGACTTGCTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

236

Amino Acids

25.59

Weight (kDa)

8.86

Isoelectric Point (pI)

52.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 136 - 206 3.3e-11 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 603
AasI GACNNNNNNGTC 1 cut(s) 273
Acc16I TGCGCA 2 cut(s) 209, 216
Acc36I ACCTGC 1 cut(s) 213
AccB1I GGYRCC 1 cut(s) 684
AccI GTMKAC 1 cut(s) 34
AccII CGCG 1 cut(s) 11
AciI CCGC 4 cut(s) 5, 41, 234, 530
AclWI GGATC 2 cut(s) 284, 521
AcsI RAATTY 3 cut(s) 58, 219, 605
AfaI GTAC 3 cut(s) 23, 403, 436
AfiI CCNNNNNNNGG 1 cut(s) 473
AflII CTTAAG 1 cut(s) 637
AflIII ACRYGT 1 cut(s) 9
AjiI CACGTC 1 cut(s) 443
AjnI CCWGG 6 cut(s) 99, 271, 322, 388, 517, 661
AluBI AGCT 1 cut(s) 452
AluI AGCT 1 cut(s) 452
Alw26I GTCTC 1 cut(s) 484
AlwI GGATC 2 cut(s) 284, 521
AlwNI CAGNNNCTG 1 cut(s) 578
AoxI GGCC 4 cut(s) 45, 238, 368, 564
ApeKI GCWGC 1 cut(s) 572
ApoI RAATTY 3 cut(s) 58, 219, 605
AspLEI GCGC 2 cut(s) 210, 217
AspS9I GGNCC 2 cut(s) 266, 565
AvaII GGWCC 1 cut(s) 266
BaeGI GKGCMC 1 cut(s) 687
BanI GGYRCC 1 cut(s) 684
BauI CACGAG 1 cut(s) 494
BbsI GAAGAC 1 cut(s) 144
BbvI GCAGC 1 cut(s) 584
BccI CCATC 2 cut(s) 23, 295
BceAI ACGGC 1 cut(s) 383
BcgI CGANNNNNNTGC 4 cut(s) 77, 111, 635, 669
BciT130I CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
BcoDI GTCTC 1 cut(s) 484
BfaI CTAG 2 cut(s) 249, 438
BfrI CTTAAG 1 cut(s) 637
BfuAI ACCTGC 1 cut(s) 213
BisI GCNGC 1 cut(s) 573
BlsI GCNGC 1 cut(s) 574
Bme1390I CCNGG 6 cut(s) 101, 273, 324, 390, 519, 663
Bme18I GGWCC 1 cut(s) 266
BmgBI CACGTC 1 cut(s) 443
BmgT120I GGNCC 2 cut(s) 266, 565
BmiI GGNNCC 3 cut(s) 267, 330, 686
BmrFI CCNGG 6 cut(s) 101, 273, 324, 390, 519, 663
BmsI GCATC 2 cut(s) 85, 577
BpiI GAAGAC 1 cut(s) 144
BpmI CTGGAG 1 cut(s) 540
BsaJI CCNNGG 7 cut(s) 48, 99, 100, 157, 322, 323, 688
Bsc4I CCNNNNNNNGG 1 cut(s) 473
Bse118I RCCGGY 1 cut(s) 43
Bse1I ACTGG 2 cut(s) 241, 399
Bse3DI GCAATG 1 cut(s) 590
BseBI CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
BseDI CCNNGG 7 cut(s) 48, 99, 100, 157, 322, 323, 688
BseGI GGATG 2 cut(s) 514, 592
BseLI CCNNNNNNNGG 1 cut(s) 473
BseMI GCAATG 1 cut(s) 590
BseMII CTCAG 1 cut(s) 642
BseNI ACTGG 2 cut(s) 241, 399
BseRI GAGGAG 1 cut(s) 537
BseSI GKGCMC 1 cut(s) 687
BseXI GCAGC 1 cut(s) 584
Bsh1236I CGCG 1 cut(s) 11
BshFI GGCC 4 cut(s) 47, 240, 370, 566
BshNI GGYRCC 1 cut(s) 684
BsiSI CCGG 2 cut(s) 44, 563
BslFI GGGAC 1 cut(s) 279
BslI CCNNNNNNNGG 1 cut(s) 473
BsmAI GTCTC 1 cut(s) 484
BsmFI GGGAC 1 cut(s) 279
BsnI GGCC 4 cut(s) 47, 240, 370, 566
Bsp1286I GDGCHC 1 cut(s) 687
Bsp143I GATC 3 cut(s) 196, 289, 526
BspACI CCGC 4 cut(s) 5, 41, 234, 530
BspANI GGCC 4 cut(s) 47, 240, 370, 566
BspCNI CTCAG 1 cut(s) 641
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 3 cut(s) 267, 330, 686
BspMI ACCTGC 1 cut(s) 213
BspPI GGATC 2 cut(s) 284, 521
BspT107I GGYRCC 1 cut(s) 684
BspTI CTTAAG 1 cut(s) 637
BsrDI GCAATG 1 cut(s) 590
BsrFI RCCGGY 1 cut(s) 43
BsrI ACTGG 2 cut(s) 241, 399
BssAI RCCGGY 1 cut(s) 43
BssECI CCNNGG 7 cut(s) 48, 99, 100, 157, 322, 323, 688
BssMI GATC 3 cut(s) 196, 289, 526
BssSI CACGAG 1 cut(s) 494
Bst2BI CACGAG 1 cut(s) 494
Bst2UI CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
Bst4CI ACNGT 2 cut(s) 434, 623
BstAFI CTTAAG 1 cut(s) 637
BstAPI GCANNNNNTGC 1 cut(s) 578
BstC8I GCNNGC 2 cut(s) 45, 655
BstDEI CTNAG 2 cut(s) 349, 628
BstF5I GGATG 2 cut(s) 514, 592
BstFNI CGCG 1 cut(s) 11
BstHHI GCGC 2 cut(s) 210, 217
BstKTI GATC 3 cut(s) 199, 292, 529
BstMAI GTCTC 1 cut(s) 484
BstMBI GATC 3 cut(s) 196, 289, 526
BstMWI GCNNNNNNNGC 4 cut(s) 214, 572, 578, 587
BstNI CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
BstSCI CCNGG 6 cut(s) 99, 271, 322, 388, 517, 661
BstSLI GKGCMC 1 cut(s) 687
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 1 cut(s) 584
BstV2I GAAGAC 1 cut(s) 144
BstX2I RGATCY 1 cut(s) 526
BstYI RGATCY 1 cut(s) 526
BsuRI GGCC 4 cut(s) 47, 240, 370, 566
BtgZI GCGATG 2 cut(s) 42, 68
BtrI CACGTC 1 cut(s) 443
BtsCI GGATG 2 cut(s) 514, 592
BtsI GCAGTG 1 cut(s) 217
BtsIMutI CAGTG 1 cut(s) 217
BveI ACCTGC 1 cut(s) 213
Cac8I GCNNGC 2 cut(s) 45, 655
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 2 cut(s) 210, 217
Cfr10I RCCGGY 1 cut(s) 43
Cfr13I GGNCC 2 cut(s) 266, 565
CseI GACGC 4 cut(s) 17, 65, 177, 383
CsiI ACCWGGT 1 cut(s) 271
Csp6I GTAC 3 cut(s) 22, 402, 435
CviAII CATG 4 cut(s) 256, 298, 569, 617
CviJI RGCY 6 cut(s) 47, 240, 370, 452, 477, 566
CviKI_1 RGCY 6 cut(s) 47, 240, 370, 452, 477, 566
CviQI GTAC 3 cut(s) 22, 402, 435
DdeI CTNAG 2 cut(s) 349, 628
DpnI GATC 3 cut(s) 198, 291, 528
DpnII GATC 3 cut(s) 196, 289, 526
DrdI GACNNNNNNGTC 1 cut(s) 273
DseDI GACNNNNNNGTC 1 cut(s) 273
EciI GGCGGA 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 266
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 6 cut(s) 99, 271, 322, 388, 517, 661
EcoT22I ATGCAT 1 cut(s) 592
FaeI CATG 4 cut(s) 259, 301, 572, 620
FaqI GGGAC 1 cut(s) 279
FatI CATG 4 cut(s) 255, 297, 568, 616
FblI GTMKAC 1 cut(s) 34
Fnu4HI GCNGC 1 cut(s) 573
FokI GGATG 2 cut(s) 501, 599
Fsp4HI GCNGC 1 cut(s) 573
FspBI CTAG 2 cut(s) 249, 438
FspI TGCGCA 2 cut(s) 209, 216
GlaI GCGC 2 cut(s) 209, 216
GluI GCNGC 1 cut(s) 573
GsuI CTGGAG 1 cut(s) 540
HaeIII GGCC 4 cut(s) 47, 240, 370, 566
HapII CCGG 2 cut(s) 44, 563
HgaI GACGC 4 cut(s) 17, 65, 177, 383
HhaI GCGC 2 cut(s) 210, 217
Hin1II CATG 4 cut(s) 259, 301, 572, 620
Hin6I GCGC 2 cut(s) 208, 215
HinP1I GCGC 2 cut(s) 208, 215
HincII GTYRAC 3 cut(s) 35, 319, 634
HindII GTYRAC 3 cut(s) 35, 319, 634
HinfI GANTC 5 cut(s) 176, 492, 506, 559, 626
HpaII CCGG 2 cut(s) 44, 563
Hpy166II GTNNAC 4 cut(s) 35, 319, 365, 634
Hpy188I TCNGA 3 cut(s) 71, 88, 158
Hpy188III TCNNGA 3 cut(s) 110, 496, 510
Hpy8I GTNNAC 4 cut(s) 35, 319, 365, 634
Hpy99I CGWCG 2 cut(s) 71, 193
HpyAV CCTTC 1 cut(s) 392
HpyCH4III ACNGT 2 cut(s) 434, 623
HpyCH4IV ACGT 1 cut(s) 442
HpyCH4V TGCA 4 cut(s) 572, 590, 595, 646
HpyF10VI GCNNNNNNNGC 4 cut(s) 214, 572, 578, 587
HpyF3I CTNAG 2 cut(s) 349, 628
HpySE526I ACGT 1 cut(s) 442
Hsp92II CATG 4 cut(s) 259, 301, 572, 620
HspAI GCGC 2 cut(s) 208, 215
KroI GCCGGC 1 cut(s) 43
KroNI GCCGGC 1 cut(s) 45
Kzo9I GATC 3 cut(s) 196, 289, 526
LmnI GCTCC 2 cut(s) 89, 382
Lsp1109I GCAGC 1 cut(s) 584
LweI GCATC 2 cut(s) 85, 577
MabI ACCWGGT 1 cut(s) 271
MaeI CTAG 2 cut(s) 249, 438
MaeII ACGT 1 cut(s) 442
MaeIII GTNAC 3 cut(s) 107, 200, 623
MalI GATC 3 cut(s) 198, 291, 528
MboI GATC 3 cut(s) 196, 289, 526
MboII GAAGA 1 cut(s) 149
MflI RGATCY 1 cut(s) 526
MhlI GDGCHC 1 cut(s) 687
MluCI AATT 6 cut(s) 58, 162, 219, 306, 605, 647
MluI ACGCGT 1 cut(s) 9
MlyI GAGTC 4 cut(s) 170, 486, 568, 620
MmeI TCCRAC 1 cut(s) 49
Mph1103I ATGCAT 1 cut(s) 592
MroNI GCCGGC 1 cut(s) 43
MseI TTAA 2 cut(s) 336, 638
MslI CAYNNNNRTG 1 cut(s) 621
MspA1I CMGCKG 1 cut(s) 532
MspCI CTTAAG 1 cut(s) 637
MspI CCGG 2 cut(s) 44, 563
MspR9I CCNGG 6 cut(s) 101, 273, 324, 390, 519, 663
MvaI CCWGG 6 cut(s) 101, 273, 324, 390, 519, 663
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 4 cut(s) 214, 572, 578, 587
NaeI GCCGGC 1 cut(s) 45
NdeII GATC 3 cut(s) 196, 289, 526
NgoMIV GCCGGC 1 cut(s) 43
NlaIII CATG 4 cut(s) 259, 301, 572, 620
NlaIV GGNNCC 3 cut(s) 267, 330, 686
NmeAIII GCCGAG 1 cut(s) 29
NmuCI GTSAC 2 cut(s) 107, 623
NsbI TGCGCA 2 cut(s) 209, 216
NsiI ATGCAT 1 cut(s) 592
PasI CCCWGGG 2 cut(s) 100, 323
PdiI GCCGGC 1 cut(s) 45
PfeI GAWTC 1 cut(s) 506
PflFI GACNNNGTC 1 cut(s) 629
PfoI TCCNGGA 1 cut(s) 517
PkrI GCNGC 1 cut(s) 574
PleI GAGTC 4 cut(s) 170, 486, 567, 620
PpsI GAGTC 4 cut(s) 170, 486, 567, 620
PsiI TTATAA 1 cut(s) 603
Psp6I CCWGG 6 cut(s) 99, 271, 322, 388, 517, 661
PspGI CCWGG 6 cut(s) 99, 271, 322, 388, 517, 661
PspN4I GGNNCC 3 cut(s) 267, 330, 686
PspPI GGNCC 2 cut(s) 266, 565
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 1 cut(s) 526
PsyI GACNNNGTC 1 cut(s) 629
RsaI GTAC 3 cut(s) 23, 403, 436
RsaNI GTAC 3 cut(s) 22, 402, 435
RseI CAYNNNNRTG 1 cut(s) 621
SalI GTCGAC 1 cut(s) 33
SaqAI TTAA 2 cut(s) 336, 638
SatI GCNGC 1 cut(s) 573
Sau3AI GATC 3 cut(s) 196, 289, 526
Sau96I GGNCC 2 cut(s) 266, 565
SchI GAGTC 4 cut(s) 170, 486, 568, 620
ScrFI CCNGG 6 cut(s) 101, 273, 324, 390, 519, 663
SduI GDGCHC 1 cut(s) 687
SexAI ACCWGGT 1 cut(s) 271
SfaNI GCATC 2 cut(s) 85, 577
SinI GGWCC 1 cut(s) 266
SmiMI CAYNNNNRTG 1 cut(s) 621
SmlI CTYRAG 1 cut(s) 637
SmoI CTYRAG 1 cut(s) 637
Sse9I AATT 6 cut(s) 58, 162, 219, 306, 605, 647
SsiI CCGC 4 cut(s) 5, 41, 234, 530
SspMI CTAG 2 cut(s) 249, 438
StyD4I CCNGG 6 cut(s) 99, 271, 322, 388, 517, 661
TaaI ACNGT 2 cut(s) 434, 623
TaiI ACGT 1 cut(s) 445
TaqI TCGA 2 cut(s) 34, 609
TasI AATT 6 cut(s) 58, 162, 219, 306, 605, 647
TatI WGTACW 1 cut(s) 434
TfiI GAWTC 1 cut(s) 506
Tru1I TTAA 2 cut(s) 336, 638
Tru9I TTAA 2 cut(s) 336, 638
TscAI CASTG 1 cut(s) 217
TseFI GTSAC 2 cut(s) 107, 623
TseI GCWGC 1 cut(s) 572
Tsp45I GTSAC 2 cut(s) 107, 623
TspDTI ATGAA 2 cut(s) 71, 213
TspRI CASTG 1 cut(s) 217
Tth111I GACNNNGTC 1 cut(s) 629
Vha464I CTTAAG 1 cut(s) 637
VpaK11BI GGWCC 1 cut(s) 266
XapI RAATTY 3 cut(s) 58, 219, 605
XmiI GTMKAC 1 cut(s) 34
XspI CTAG 2 cut(s) 249, 438
Zsp2I ATGCAT 1 cut(s) 592
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.