pycom10g01480

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0001021
Physical Location & Seq
Forward (+)
1516954 .. 1517967
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01480.3

Sequence Viewer

Length: 549 bp
ATGCCTTCGTACACTTTTGGAGAAGCGAGTACTTTTGGTGGAGCTGGAATGGGAAAGGCTGTTAGTGGTGAAATGACAGGTCCTCCAATGGCTGATCATTCTATGAGGGGCAGTCCTAGAGCTACGTCTTCTGATCTATTAGCATATGGTCGAAATATGAGTCTTAATAATCAGTTCCCAGTTGATACAATGCCTAGGCCTGGGCGTGAAACAGTTCCCTTACCTCTGGATGCATCCAGCACTTTATATGTTGAAGGACTTCCTCCTGATAGCACAAGGAGGGAAGTAGCTCATATCTTTCGTCCTTTTGTGGGATACAAAGCAGTGAGGCTTGTGAACGAAGAGTCAGGTTTGTCCATAATGCAGCGTGGCAGGGATCCTCTTATTCTTTGTTTTGTGGATTTTGAAAATCCAGCCTGTGCAGCAACTGCTCTGAGTGCCTTGCAAGGTTATGAAATGGATGAACAAGCTCCTGATTTTAATTACTTGCGACTGCAGTTTTATCAGTTCCCGGATCCCAGGTCTAGACCTTGCCGTAACAAGGGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

183

Amino Acids

20.01

Weight (kDa)

5.71

Isoelectric Point (pI)

50.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 4 cut(s) 371, 384, 509, 522
AfaI GTAC 2 cut(s) 11, 31
AfiI CCNNNNNNNGG 3 cut(s) 200, 311, 541
AgsI TTSAA 2 cut(s) 254, 407
AjnI CCWGG 2 cut(s) 199, 518
AluBI AGCT 4 cut(s) 44, 122, 290, 470
AluI AGCT 4 cut(s) 44, 122, 290, 470
AlwI GGATC 4 cut(s) 371, 384, 509, 522
AlwNI CAGNNNCTG 1 cut(s) 428
AoxI GGCC 1 cut(s) 197
ApeKI GCWGC 2 cut(s) 364, 422
ArsI GACNNNNNNTTYG 2 cut(s) 145, 177
Asp700I GAANNNNTTC 2 cut(s) 213, 258
AspA2I CCTAGG 1 cut(s) 194
AspS9I GGNCC 1 cut(s) 80
AsuC2I CCSGG 1 cut(s) 512
AsuHPI GGTGA 1 cut(s) 80
AvaII GGWCC 1 cut(s) 80
AvrII CCTAGG 1 cut(s) 194
BamHI GGATCC 2 cut(s) 376, 514
BbsI GAAGAC 1 cut(s) 120
BbvI GCAGC 2 cut(s) 376, 434
BceAI ACGGC 1 cut(s) 519
BciT130I CCWGG 2 cut(s) 201, 520
BciVI GTATCC 1 cut(s) 308
BclI TGATCA 1 cut(s) 94
BcnI CCSGG 1 cut(s) 512
BfaI CTAG 3 cut(s) 117, 195, 525
BfmI CTRYAG 1 cut(s) 494
BfuI GTATCC 1 cut(s) 308
BisI GCNGC 2 cut(s) 365, 423
BlnI CCTAGG 1 cut(s) 194
BlsI GCNGC 2 cut(s) 366, 424
BmcAI AGTACT 1 cut(s) 31
Bme1390I CCNGG 3 cut(s) 201, 512, 520
Bme18I GGWCC 1 cut(s) 80
BmgT120I GGNCC 1 cut(s) 80
BmiI GGNNCC 2 cut(s) 378, 516
BmrFI CCNGG 3 cut(s) 201, 512, 520
BmrI ACTGGG 1 cut(s) 173
BmsI GCATC 2 cut(s) 220, 242
BmuI ACTGGG 1 cut(s) 173
BpiI GAAGAC 1 cut(s) 120
BpuMI CCSGG 1 cut(s) 512
BsaJI CCNNGG 3 cut(s) 194, 200, 518
BsaXI ACNNNNNCTCC 2 cut(s) 67, 97
Bsc4I CCNNNNNNNGG 3 cut(s) 200, 311, 541
Bse1I ACTGG 1 cut(s) 179
BseBI CCWGG 2 cut(s) 201, 520
BseDI CCNNGG 3 cut(s) 194, 200, 518
BseGI GGATG 3 cut(s) 233, 235, 466
BseLI CCNNNNNNNGG 3 cut(s) 200, 311, 541
BseMII CTCAG 1 cut(s) 425
BseNI ACTGG 1 cut(s) 179
BseXI GCAGC 2 cut(s) 376, 434
BsgI GTGCAG 1 cut(s) 441
BshFI GGCC 1 cut(s) 199
BsiSI CCGG 1 cut(s) 512
BslI CCNNNNNNNGG 3 cut(s) 200, 311, 541
BsnI GGCC 1 cut(s) 199
Bsp143I GATC 4 cut(s) 94, 133, 376, 514
BspANI GGCC 1 cut(s) 199
BspCNI CTCAG 1 cut(s) 426
BspLI GGNNCC 2 cut(s) 378, 516
BspMAI CTGCAG 1 cut(s) 498
BspPI GGATC 4 cut(s) 371, 384, 509, 522
BsrI ACTGG 1 cut(s) 179
BssECI CCNNGG 3 cut(s) 194, 200, 518
BssMI GATC 4 cut(s) 94, 133, 376, 514
BssT1I CCWWGG 1 cut(s) 194
Bst2UI CCWGG 2 cut(s) 201, 520
Bst4CI ACNGT 1 cut(s) 214
Bst6I CTCTTC 1 cut(s) 336
BstAPI GCANNNNNTGC 1 cut(s) 428
BstDEI CTNAG 1 cut(s) 434
BstF5I GGATG 3 cut(s) 233, 235, 466
BstKTI GATC 4 cut(s) 97, 136, 379, 517
BstMBI GATC 4 cut(s) 94, 133, 376, 514
BstMWI GCNNNNNNNGC 3 cut(s) 422, 428, 437
BstNI CCWGG 2 cut(s) 201, 520
BstSCI CCNGG 3 cut(s) 199, 510, 518
BstSFI CTRYAG 1 cut(s) 494
BstV1I GCAGC 2 cut(s) 376, 434
BstV2I GAAGAC 1 cut(s) 120
BstX2I RGATCY 2 cut(s) 376, 514
BstYI RGATCY 2 cut(s) 376, 514
BsuI GTATCC 1 cut(s) 308
BsuRI GGCC 1 cut(s) 199
BtsCI GGATG 3 cut(s) 233, 235, 466
BtsI GCAGTG 1 cut(s) 330
BtsIMutI CAGTG 1 cut(s) 330
CaiI CAGNNNCTG 1 cut(s) 428
Cfr13I GGNCC 1 cut(s) 80
Csp6I GTAC 2 cut(s) 10, 30
CviJI RGCY 9 cut(s) 44, 59, 92, 122, 199, 290, 331, 416, 470
CviKI_1 RGCY 9 cut(s) 44, 59, 92, 122, 199, 290, 331, 416, 470
CviQI GTAC 2 cut(s) 10, 30
DdeI CTNAG 1 cut(s) 434
DpnI GATC 4 cut(s) 96, 135, 378, 516
DpnII GATC 4 cut(s) 94, 133, 376, 514
Eam1104I CTCTTC 1 cut(s) 336
EarI CTCTTC 1 cut(s) 336
Eco130I CCWWGG 1 cut(s) 194
Eco147I AGGCCT 1 cut(s) 199
Eco47I GGWCC 1 cut(s) 80
EcoO109I RGGNCCY 1 cut(s) 80
EcoRII CCWGG 2 cut(s) 199, 518
EcoT14I CCWWGG 1 cut(s) 194
EcoT22I ATGCAT 1 cut(s) 235
ErhI CCWWGG 1 cut(s) 194
FaiI YATR 9 cut(s) 104, 145, 147, 158, 247, 249, 294, 359, 453
FauNDI CATATG 1 cut(s) 145
FbaI TGATCA 1 cut(s) 94
Fnu4HI GCNGC 2 cut(s) 365, 423
FokI GGATG 3 cut(s) 220, 242, 473
Fsp4HI GCNGC 2 cut(s) 365, 423
FspBI CTAG 3 cut(s) 117, 195, 525
GluI GCNGC 2 cut(s) 365, 423
HaeIII GGCC 1 cut(s) 199
HapII CCGG 1 cut(s) 512
HinfI GANTC 2 cut(s) 160, 344
HpaII CCGG 1 cut(s) 512
HphI GGTGA 1 cut(s) 80
Hpy166II GTNNAC 2 cut(s) 12, 337
Hpy188I TCNGA 2 cut(s) 133, 435
Hpy188III TCNNGA 4 cut(s) 227, 266, 473, 525
Hpy8I GTNNAC 2 cut(s) 12, 337
HpyAV CCTTC 2 cut(s) 15, 248
HpyCH4III ACNGT 1 cut(s) 214
HpyCH4IV ACGT 1 cut(s) 125
HpyCH4V TGCA 5 cut(s) 233, 364, 422, 445, 496
HpyF10VI GCNNNNNNNGC 3 cut(s) 422, 428, 437
HpyF3I CTNAG 1 cut(s) 434
HpySE526I ACGT 1 cut(s) 125
Ksp22I TGATCA 1 cut(s) 94
Kzo9I GATC 4 cut(s) 94, 133, 376, 514
LmnI GCTCC 2 cut(s) 41, 475
Lsp1109I GCAGC 2 cut(s) 376, 434
LweI GCATC 2 cut(s) 220, 242
MaeI CTAG 3 cut(s) 117, 195, 525
MaeII ACGT 1 cut(s) 125
MaeIII GTNAC 1 cut(s) 536
MalI GATC 4 cut(s) 96, 135, 378, 516
MboI GATC 4 cut(s) 94, 133, 376, 514
MboII GAAGA 2 cut(s) 120, 353
MflI RGATCY 2 cut(s) 376, 514
MluCI AATT 1 cut(s) 481
MlyI GAGTC 2 cut(s) 169, 353
MnlI CCTC 7 cut(s) 93, 99, 234, 273, 273, 321, 390
Mph1103I ATGCAT 1 cut(s) 235
MroXI GAANNNNTTC 2 cut(s) 213, 258
MseI TTAA 2 cut(s) 165, 480
MspI CCGG 1 cut(s) 512
MspR9I CCNGG 3 cut(s) 201, 512, 520
MvaI CCWGG 2 cut(s) 201, 520
MwoI GCNNNNNNNGC 3 cut(s) 422, 428, 437
NciI CCSGG 1 cut(s) 512
NdeI CATATG 1 cut(s) 145
NdeII GATC 4 cut(s) 94, 133, 376, 514
NlaIV GGNNCC 2 cut(s) 378, 516
NsiI ATGCAT 1 cut(s) 235
PceI AGGCCT 1 cut(s) 199
PdmI GAANNNNTTC 2 cut(s) 213, 258
PfoI TCCNGGA 1 cut(s) 510
PkrI GCNGC 2 cut(s) 366, 424
PleI GAGTC 2 cut(s) 168, 352
PpsI GAGTC 2 cut(s) 168, 352
PpuMI RGGWCCY 1 cut(s) 80
Psp5II RGGWCCY 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 199, 518
PspGI CCWGG 2 cut(s) 199, 518
PspN4I GGNNCC 2 cut(s) 378, 516
PspPI GGNCC 1 cut(s) 80
PspPPI RGGWCCY 1 cut(s) 80
PstI CTGCAG 1 cut(s) 498
PstNI CAGNNNCTG 1 cut(s) 428
PsuI RGATCY 2 cut(s) 376, 514
RsaI GTAC 2 cut(s) 11, 31
RsaNI GTAC 2 cut(s) 10, 30
SaqAI TTAA 2 cut(s) 165, 480
SatI GCNGC 2 cut(s) 365, 423
Sau3AI GATC 4 cut(s) 94, 133, 376, 514
Sau96I GGNCC 1 cut(s) 80
ScaI AGTACT 1 cut(s) 31
SchI GAGTC 2 cut(s) 169, 353
ScrFI CCNGG 3 cut(s) 201, 512, 520
SfaNI GCATC 2 cut(s) 220, 242
SfcI CTRYAG 1 cut(s) 494
SinI GGWCC 1 cut(s) 80
Sse9I AATT 1 cut(s) 481
SseBI AGGCCT 1 cut(s) 199
SspMI CTAG 3 cut(s) 117, 195, 525
StuI AGGCCT 1 cut(s) 199
StyD4I CCNGG 3 cut(s) 199, 510, 518
StyI CCWWGG 1 cut(s) 194
TaaI ACNGT 1 cut(s) 214
TaiI ACGT 1 cut(s) 128
TaqI TCGA 1 cut(s) 151
TasI AATT 1 cut(s) 481
TatI WGTACW 1 cut(s) 29
Tru1I TTAA 2 cut(s) 165, 480
Tru9I TTAA 2 cut(s) 165, 480
TscAI CASTG 1 cut(s) 330
TseI GCWGC 2 cut(s) 364, 422
TspDTI ATGAA 2 cut(s) 468, 477
TspRI CASTG 1 cut(s) 330
VpaK11BI GGWCC 1 cut(s) 80
XbaI TCTAGA 1 cut(s) 524
XmaJI CCTAGG 1 cut(s) 194
XmnI GAANNNNTTC 2 cut(s) 213, 258
XspI CTAG 3 cut(s) 117, 195, 525
ZrmI AGTACT 1 cut(s) 31
Zsp2I ATGCAT 1 cut(s) 235
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.