Rw1G041390

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001021
Physical Location & Seq
Reverse (-)
68256161 .. 68259588
3428 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G041390.1

Sequence Viewer

Length: 684 bp
ATGGCAGACGCTTATTGGAGGTACAGCGACGGACGGCAGCCGCCTCCGTCGGGGATGAATTCCGGCATGGGGAAGCGCCCGCGTCCCGATTACGATTCCCATAGTGGCCATGACCTGCCTGGTTATTATCCCCATGAAGATGATAGAGGTTCACTCCGTGCGATGAGAGATACAGACTCCATTAACGCATCATATGATCGCTACCGCCAAATGTCATCTTATAGTGGGGGACAGTCTGCTAGAAACATGAGCGGGGGACTACCTGGTCGTTCTGTTGATGACCCACGAATGATGGGAATGGTTGAACCTGGGCCTGTAAAAAGAGGGTCTTGGGATTGGGAAGTGGGAGGCCTGAGGTTCCCCTTCCTCCTGGTGCTACCAGTACACTTTTTTGTGGAAGGATTGCCTGCCAACTGTACACGACGTGAAGTAGCTCACATCTTTCGCCCATTTGTTGGCTACAAAGAAGTGAGACTCGTAAGCAAGGAATCAAGACATCCTGGAGGTGAACCTTTGGTACTTTGTTTTGTTGATTTTATGAGCCCTGCCCATGCAGCCACTGCTATGGATGCCTTGCAAGGTTATACGTTTGATGAGCATGACCGGGACTCGGTCAATTTAAGGTTGCAATTTGCTCGCTATCCTGGTGCAAGGTCAGGTGGGGGGCACCGAGGGAAGCGTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

227

Amino Acids

25.44

Weight (kDa)

8.88

Isoelectric Point (pI)

59.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 131 - 200 8.9e-10 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 264
Acc36I ACCTGC 1 cut(s) 123
AccB1I GGYRCC 1 cut(s) 666
AccB7I CCANNNNNTGG 1 cut(s) 455
AccBSI CCGCTC 1 cut(s) 252
AccII CGCG 1 cut(s) 82
AciI CCGC 4 cut(s) 41, 80, 205, 252
AcoI YGGCCR 1 cut(s) 106
AcsI RAATTY 1 cut(s) 58
AdeI CACNNNGTG 2 cut(s) 158, 425
AfaI GTAC 4 cut(s) 23, 384, 418, 519
AfiI CCNNNNNNNGG 4 cut(s) 50, 69, 455, 610
AgsI TTSAA 1 cut(s) 305
AjiI CACGTC 1 cut(s) 425
AjnI CCWGG 6 cut(s) 118, 262, 307, 369, 499, 643
AluBI AGCT 1 cut(s) 434
AluI AGCT 1 cut(s) 434
Alw26I GTCTC 1 cut(s) 466
AlwNI CAGNNNCTG 1 cut(s) 560
AoxI GGCC 3 cut(s) 106, 311, 349
ApeKI GCWGC 2 cut(s) 37, 554
ApoI RAATTY 1 cut(s) 58
AspLEI GCGC 1 cut(s) 78
AspS9I GGNCC 1 cut(s) 311
AsuC2I CCSGG 1 cut(s) 605
AsuHPI GGTGA 1 cut(s) 518
AxyI CCTNAGG 1 cut(s) 353
BaeGI GKGCMC 1 cut(s) 669
BalI TGGCCA 1 cut(s) 108
BanI GGYRCC 1 cut(s) 666
BanII GRGCYC 1 cut(s) 545
BbvI GCAGC 2 cut(s) 49, 566
BccI CCATC 1 cut(s) 286
BceAI ACGGC 1 cut(s) 50
BcgI CGANNNNNNTGC 2 cut(s) 617, 651
BciT130I CCWGG 6 cut(s) 120, 264, 309, 371, 501, 645
BcnI CCSGG 1 cut(s) 605
BcoDI GTCTC 1 cut(s) 466
BfaI CTAG 1 cut(s) 240
BfoI RGCGCY 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 123
BisI GCNGC 3 cut(s) 38, 41, 555
BlsI GCNGC 3 cut(s) 39, 42, 556
Bme1390I CCNGG 7 cut(s) 120, 264, 309, 371, 501, 605, 645
BmgBI CACGTC 1 cut(s) 425
BmgT120I GGNCC 1 cut(s) 311
BmiI GGNNCC 2 cut(s) 359, 668
BmrFI CCNGG 7 cut(s) 120, 264, 309, 371, 501, 605, 645
BmsI GCATC 2 cut(s) 197, 559
BplI GAGNNNNNCTC 2 cut(s) 138, 170
BpmI CTGGAG 1 cut(s) 522
BpuMI CCSGG 1 cut(s) 605
BsaJI CCNNGG 2 cut(s) 308, 670
Bsc4I CCNNNNNNNGG 4 cut(s) 50, 69, 455, 610
Bse1I ACTGG 1 cut(s) 380
Bse21I CCTNAGG 1 cut(s) 353
BseBI CCWGG 6 cut(s) 120, 264, 309, 371, 501, 645
BseDI CCNNGG 2 cut(s) 308, 670
BseGI GGATG 3 cut(s) 60, 496, 574
BseLI CCNNNNNNNGG 4 cut(s) 50, 69, 455, 610
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 1 cut(s) 380
BseSI GKGCMC 1 cut(s) 669
BseXI GCAGC 2 cut(s) 49, 566
Bsh1236I CGCG 1 cut(s) 82
BshFI GGCC 3 cut(s) 108, 313, 351
BshNI GGYRCC 1 cut(s) 666
BsiSI CCGG 2 cut(s) 63, 604
BslFI GGGAC 4 cut(s) 69, 243, 270, 620
BslI CCNNNNNNNGG 4 cut(s) 50, 69, 455, 610
BsmAI GTCTC 1 cut(s) 466
BsmFI GGGAC 4 cut(s) 69, 243, 270, 620
BsnI GGCC 3 cut(s) 108, 313, 351
Bsp1286I GDGCHC 2 cut(s) 545, 669
Bsp1407I TGTACA 1 cut(s) 416
Bsp143I GATC 1 cut(s) 196
BspACI CCGC 4 cut(s) 41, 80, 205, 252
BspANI GGCC 3 cut(s) 108, 313, 351
BspCNI CTCAG 1 cut(s) 345
BspFNI CGCG 1 cut(s) 82
BspLI GGNNCC 2 cut(s) 359, 668
BspMI ACCTGC 1 cut(s) 123
BspT107I GGYRCC 1 cut(s) 666
BsrBI CCGCTC 1 cut(s) 252
BsrGI TGTACA 1 cut(s) 416
BsrI ACTGG 1 cut(s) 380
BssECI CCNNGG 2 cut(s) 308, 670
BssMI GATC 1 cut(s) 196
Bst2UI CCWGG 6 cut(s) 120, 264, 309, 371, 501, 645
Bst4CI ACNGT 2 cut(s) 234, 416
BstAPI GCANNNNNTGC 1 cut(s) 560
BstAUI TGTACA 1 cut(s) 416
BstC8I GCNNGC 3 cut(s) 80, 408, 637
BstDEI CTNAG 1 cut(s) 353
BstF5I GGATG 3 cut(s) 60, 496, 574
BstFNI CGCG 1 cut(s) 82
BstH2I RGCGCY 1 cut(s) 79
BstHHI GCGC 1 cut(s) 78
BstKTI GATC 1 cut(s) 199
BstMAI GTCTC 1 cut(s) 466
BstMBI GATC 1 cut(s) 196
BstMWI GCNNNNNNNGC 3 cut(s) 554, 560, 569
BstNI CCWGG 6 cut(s) 120, 264, 309, 371, 501, 645
BstSCI CCNGG 7 cut(s) 118, 262, 307, 369, 499, 603, 643
BstSLI GKGCMC 1 cut(s) 669
BstUI CGCG 1 cut(s) 82
BstV1I GCAGC 2 cut(s) 49, 566
BstXI CCANNNNNNTGG 1 cut(s) 565
Bsu36I CCTNAGG 1 cut(s) 353
BsuRI GGCC 3 cut(s) 108, 313, 351
BtgZI GCGATG 1 cut(s) 176
BtrI CACGTC 1 cut(s) 425
BtsCI GGATG 3 cut(s) 60, 496, 574
BtsI GCAGTG 1 cut(s) 558
BtsIMutI CAGTG 1 cut(s) 558
BveI ACCTGC 1 cut(s) 123
Cac8I GCNNGC 3 cut(s) 80, 408, 637
CaiI CAGNNNCTG 1 cut(s) 560
CfoI GCGC 1 cut(s) 78
Cfr13I GGNCC 1 cut(s) 311
CseI GACGC 2 cut(s) 17, 71
CsiI ACCWGGT 1 cut(s) 262
Csp6I GTAC 4 cut(s) 22, 383, 417, 518
CviAII CATG 6 cut(s) 67, 110, 134, 247, 551, 599
CviJI RGCY 8 cut(s) 40, 108, 313, 351, 434, 459, 543, 557
CviKI_1 RGCY 8 cut(s) 40, 108, 313, 351, 434, 459, 543, 557
CviQI GTAC 4 cut(s) 22, 383, 417, 518
DdeI CTNAG 1 cut(s) 353
DpnI GATC 1 cut(s) 198
DpnII GATC 1 cut(s) 196
DraIII CACNNNGTG 2 cut(s) 158, 425
DrdI GACNNNNNNGTC 1 cut(s) 264
DseDI GACNNNNNNGTC 1 cut(s) 264
EaeI YGGCCR 1 cut(s) 106
Eco147I AGGCCT 1 cut(s) 351
Eco24I GRGCYC 1 cut(s) 545
Eco81I CCTNAGG 1 cut(s) 353
EcoRI GAATTC 1 cut(s) 58
EcoRII CCWGG 6 cut(s) 118, 262, 307, 369, 499, 643
EcoT38I GRGCYC 1 cut(s) 545
FaeI CATG 6 cut(s) 70, 113, 137, 250, 554, 602
FalI AAGNNNNNCTT 2 cut(s) 313, 345
FaqI GGGAC 4 cut(s) 69, 243, 270, 620
FatI CATG 6 cut(s) 66, 109, 133, 246, 550, 598
FauI CCCGC 2 cut(s) 87, 245
FauNDI CATATG 1 cut(s) 193
Fnu4HI GCNGC 3 cut(s) 38, 41, 555
FokI GGATG 3 cut(s) 67, 483, 581
FriOI GRGCYC 1 cut(s) 545
Fsp4HI GCNGC 3 cut(s) 38, 41, 555
FspBI CTAG 1 cut(s) 240
GlaI GCGC 1 cut(s) 77
GluI GCNGC 3 cut(s) 38, 41, 555
GsuI CTGGAG 1 cut(s) 522
HaeII RGCGCY 1 cut(s) 79
HaeIII GGCC 3 cut(s) 108, 313, 351
HapII CCGG 2 cut(s) 63, 604
HgaI GACGC 2 cut(s) 17, 71
HhaI GCGC 1 cut(s) 78
Hin1II CATG 6 cut(s) 70, 113, 137, 250, 554, 602
Hin6I GCGC 1 cut(s) 76
HinP1I GCGC 1 cut(s) 76
HinfI GANTC 5 cut(s) 95, 176, 474, 488, 608
HpaII CCGG 2 cut(s) 63, 604
HphI GGTGA 1 cut(s) 518
Hpy166II GTNNAC 4 cut(s) 152, 385, 419, 509
Hpy188III TCNNGA 2 cut(s) 86, 492
Hpy8I GTNNAC 4 cut(s) 152, 385, 419, 509
Hpy99I CGWCG 3 cut(s) 32, 52, 426
HpyAV CCTTC 2 cut(s) 373, 392
HpyCH4III ACNGT 2 cut(s) 234, 416
HpyCH4IV ACGT 2 cut(s) 424, 587
HpyCH4V TGCA 4 cut(s) 554, 577, 628, 650
HpyF10VI GCNNNNNNNGC 3 cut(s) 554, 560, 569
HpyF3I CTNAG 1 cut(s) 353
HpySE526I ACGT 2 cut(s) 424, 587
Hsp92II CATG 6 cut(s) 70, 113, 137, 250, 554, 602
HspAI GCGC 1 cut(s) 76
Kzo9I GATC 1 cut(s) 196
Lsp1109I GCAGC 2 cut(s) 49, 566
LweI GCATC 2 cut(s) 197, 559
MabI ACCWGGT 1 cut(s) 262
MaeI CTAG 1 cut(s) 240
MaeII ACGT 2 cut(s) 424, 587
MalI GATC 1 cut(s) 198
MbiI CCGCTC 1 cut(s) 252
MboI GATC 1 cut(s) 196
MboII GAAGA 1 cut(s) 149
MhlI GDGCHC 2 cut(s) 545, 669
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 3 cut(s) 58, 616, 629
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 3 cut(s) 170, 468, 602
MnlI CCTC 9 cut(s) 12, 54, 140, 317, 341, 348, 377, 497, 665
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 2 cut(s) 183, 620
MslI CAYNNNNRTG 2 cut(s) 138, 563
Msp20I TGGCCA 1 cut(s) 108
MspI CCGG 2 cut(s) 63, 604
MspR9I CCNGG 7 cut(s) 120, 264, 309, 371, 501, 605, 645
MvaI CCWGG 6 cut(s) 120, 264, 309, 371, 501, 645
MvnI CGCG 1 cut(s) 82
MwoI GCNNNNNNNGC 3 cut(s) 554, 560, 569
NciI CCSGG 1 cut(s) 605
NdeI CATATG 1 cut(s) 193
NdeII GATC 1 cut(s) 196
NlaIII CATG 6 cut(s) 70, 113, 137, 250, 554, 602
NlaIV GGNNCC 2 cut(s) 359, 668
PceI AGGCCT 1 cut(s) 351
PfeI GAWTC 2 cut(s) 95, 488
PflFI GACNNNGTC 1 cut(s) 611
PflMI CCANNNNNTGG 1 cut(s) 455
PfoI TCCNGGA 1 cut(s) 499
PkrI GCNGC 3 cut(s) 39, 42, 556
PleI GAGTC 3 cut(s) 170, 468, 602
PpsI GAGTC 3 cut(s) 170, 468, 602
Psp6I CCWGG 6 cut(s) 118, 262, 307, 369, 499, 643
PspGI CCWGG 6 cut(s) 118, 262, 307, 369, 499, 643
PspN4I GGNNCC 2 cut(s) 359, 668
PspPI GGNCC 1 cut(s) 311
PsrI GAACNNNNNNTAC 2 cut(s) 501, 533
PstNI CAGNNNCTG 1 cut(s) 560
PsyI GACNNNGTC 1 cut(s) 611
RsaI GTAC 4 cut(s) 23, 384, 418, 519
RsaNI GTAC 4 cut(s) 22, 383, 417, 518
RseI CAYNNNNRTG 2 cut(s) 138, 563
SaqAI TTAA 2 cut(s) 183, 620
SatI GCNGC 3 cut(s) 38, 41, 555
Sau3AI GATC 1 cut(s) 196
Sau96I GGNCC 1 cut(s) 311
SchI GAGTC 3 cut(s) 170, 468, 602
ScrFI CCNGG 7 cut(s) 120, 264, 309, 371, 501, 605, 645
SduI GDGCHC 2 cut(s) 545, 669
SexAI ACCWGGT 1 cut(s) 262
SfaNI GCATC 2 cut(s) 197, 559
SmiMI CAYNNNNRTG 2 cut(s) 138, 563
Sse9I AATT 3 cut(s) 58, 616, 629
SseBI AGGCCT 1 cut(s) 351
SsiI CCGC 4 cut(s) 41, 80, 205, 252
SspMI CTAG 1 cut(s) 240
StuI AGGCCT 1 cut(s) 351
StyD4I CCNGG 7 cut(s) 118, 262, 307, 369, 499, 603, 643
TaaI ACNGT 2 cut(s) 234, 416
TaiI ACGT 2 cut(s) 427, 590
TaqII GACCGA 1 cut(s) 601
TasI AATT 3 cut(s) 58, 616, 629
TatI WGTACW 2 cut(s) 382, 416
TauI GCSGC 1 cut(s) 43
TfiI GAWTC 2 cut(s) 95, 488
Tru1I TTAA 2 cut(s) 183, 620
Tru9I TTAA 2 cut(s) 183, 620
TscAI CASTG 1 cut(s) 565
TseI GCWGC 2 cut(s) 37, 554
TspDTI ATGAA 2 cut(s) 71, 150
TspGWI ACGGA 3 cut(s) 36, 45, 146
TspRI CASTG 1 cut(s) 565
Tth111I GACNNNGTC 1 cut(s) 611
Van91I CCANNNNNTGG 1 cut(s) 455
XapI RAATTY 1 cut(s) 58
XcmI CCANNNNNNNNNTGG 1 cut(s) 116
XspI CTAG 1 cut(s) 240
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.