pycom10g01470

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr10
OG0001021
Physical Location & Seq
Forward (+)
1509617 .. 1511791
2175 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom10g01470.3

Sequence Viewer

Length: 366 bp
ATGAGGCCTCCCGCAGCAAAGCCACACAAAATAATAACCAAGCGATCTGAGTCGTCGGCGAGGTTCGACGTGAAAAATCGGTCGAAGAAGCAAAAGCAGGTCACTGAAAAAAGAAATAAAAACACGGAAGCTGAAGCTGTTGCGGGAAAAAGCTTGTCCAAATTAGGGTTCCCGAATTCGAATTCGAACCACCAACGAGAAATTTGCAGGAAAACTGAAATGGGGGACGGCATATGGAACCGGCAGCAGCAGCAGCAGCAGCATCAACTGGGTCCCTCTGGCGGTGTGCATAAACGACCTCGTTCCGACTACGGCTTTGTTGTTGGTCCTCACTTTTCATGTTTATCTGCTCTCAAAAACCCATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000375 GO:0000377 GO:0000398 GO:0001932 GO:0001934 GO:0003674 GO:0003676 GO:0003712 GO:0003713 GO:0003723 GO:0003727 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005685 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006397 GO:0006725 GO:0006807 GO:0006950 GO:0006979 GO:0008143 GO:0008150 GO:0008152 GO:0008380 GO:0009889 GO:0009891 GO:0009893 GO:0009966 GO:0009967 GO:0009987 GO:0010467 GO:0010494 GO:0010556 GO:0010557 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010862 GO:0016070 GO:0016071 GO:0017069 GO:0019219 GO:0019220 GO:0019222 GO:0023051 GO:0023056 GO:0030532 GO:0030619 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0031399 GO:0031401 GO:0031974 GO:0031981 GO:0032268 GO:0032270 GO:0032991 GO:0034641 GO:0035613 GO:0035614 GO:0035770 GO:0036464 GO:0042325 GO:0042327 GO:0042802 GO:0042803 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0045935 GO:0045937 GO:0046483 GO:0046983 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051246 GO:0051247 GO:0051252 GO:0051254 GO:0060255 GO:0060390 GO:0060391 GO:0060393 GO:0065007 GO:0070013 GO:0070717 GO:0071704 GO:0080090 GO:0090092 GO:0090100 GO:0090304 GO:0097159 GO:0097525 GO:0120114 GO:0140110 GO:1901360 GO:1901363 GO:1902680 GO:1903506 GO:1903508 GO:1990904 GO:2001141
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

122

Amino Acids

13.63

Weight (kDa)

10.55

Isoelectric Point (pI)

67.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 88
AciI CCGC 3 cut(s) 12, 143, 282
AcsI RAATTY 3 cut(s) 175, 181, 201
AcuI CTGAAG 1 cut(s) 153
AfiI CCNNNNNNNGG 2 cut(s) 165, 281
AjiI CACGTC 1 cut(s) 70
AjuI GAANNNNNNNTTGG 2 cut(s) 152, 184
AluBI AGCT 3 cut(s) 131, 137, 153
AluI AGCT 3 cut(s) 131, 137, 153
AoxI GGCC 1 cut(s) 5
ApeKI GCWGC 7 cut(s) 14, 244, 247, 250, 253, 256, 259
ApoI RAATTY 3 cut(s) 175, 181, 201
ArsI GACNNNNNNTTYG 2 cut(s) 299, 331
AspS9I GGNCC 2 cut(s) 272, 326
AsuII TTCGAA 2 cut(s) 179, 185
AvaII GGWCC 2 cut(s) 272, 326
BbvI GCAGC 7 cut(s) 26, 256, 259, 262, 265, 268, 271
BceAI ACGGC 2 cut(s) 244, 328
BcgI CGANNNNNNTGC 2 cut(s) 186, 220
BfuAI ACCTGC 1 cut(s) 88
BisI GCNGC 7 cut(s) 15, 245, 248, 251, 254, 257, 260
BlsI GCNGC 7 cut(s) 16, 246, 249, 252, 255, 258, 261
Bme18I GGWCC 2 cut(s) 272, 326
BmgBI CACGTC 1 cut(s) 70
BmgT120I GGNCC 2 cut(s) 272, 326
BmiI GGNNCC 4 cut(s) 170, 239, 273, 274
BmrI ACTGGG 1 cut(s) 278
BmsI GCATC 1 cut(s) 271
BmuI ACTGGG 1 cut(s) 278
Bpu14I TTCGAA 2 cut(s) 179, 185
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 281
Bse118I RCCGGY 1 cut(s) 240
Bse1I ACTGG 1 cut(s) 273
BseLI CCNNNNNNNGG 2 cut(s) 165, 281
BseMII CTCAG 1 cut(s) 39
BseNI ACTGG 1 cut(s) 273
BseXI GCAGC 7 cut(s) 26, 256, 259, 262, 265, 268, 271
Bsh1285I CGRYCG 1 cut(s) 83
BshFI GGCC 1 cut(s) 7
BsiEI CGRYCG 1 cut(s) 83
BsiSI CCGG 1 cut(s) 241
BslFI GGGAC 2 cut(s) 239, 258
BslI CCNNNNNNNGG 2 cut(s) 165, 281
BsmFI GGGAC 2 cut(s) 239, 258
BsnI GGCC 1 cut(s) 7
Bsp119I TTCGAA 2 cut(s) 179, 185
Bsp143I GATC 1 cut(s) 44
BspACI CCGC 3 cut(s) 12, 143, 282
BspANI GGCC 1 cut(s) 7
BspCNI CTCAG 1 cut(s) 40
BspLI GGNNCC 4 cut(s) 170, 239, 273, 274
BspMI ACCTGC 1 cut(s) 88
BspT104I TTCGAA 2 cut(s) 179, 185
BsrFI RCCGGY 1 cut(s) 240
BsrI ACTGG 1 cut(s) 273
BssAI RCCGGY 1 cut(s) 240
BssMI GATC 1 cut(s) 44
BstBI TTCGAA 2 cut(s) 179, 185
BstDEI CTNAG 1 cut(s) 48
BstKTI GATC 1 cut(s) 47
BstMBI GATC 1 cut(s) 44
BstMCI CGRYCG 1 cut(s) 83
BstMWI GCNNNNNNNGC 4 cut(s) 250, 253, 256, 259
BstV1I GCAGC 7 cut(s) 26, 256, 259, 262, 265, 268, 271
BsuRI GGCC 1 cut(s) 7
BtrI CACGTC 1 cut(s) 70
BtsIMutI CAGTG 1 cut(s) 102
BveI ACCTGC 1 cut(s) 88
Cfr10I RCCGGY 1 cut(s) 240
Cfr13I GGNCC 2 cut(s) 272, 326
CviAII CATG 2 cut(s) 339, 363
CviJI RGCY 6 cut(s) 7, 22, 131, 137, 153, 315
CviKI_1 RGCY 6 cut(s) 7, 22, 131, 137, 153, 315
DdeI CTNAG 1 cut(s) 48
DpnI GATC 1 cut(s) 46
DpnII GATC 1 cut(s) 44
Eco147I AGGCCT 1 cut(s) 7
Eco47I GGWCC 2 cut(s) 272, 326
Eco57I CTGAAG 1 cut(s) 153
EcoO109I RGGNCCY 1 cut(s) 272
EcoRI GAATTC 2 cut(s) 175, 181
FaeI CATG 2 cut(s) 342, 366
FaiI YATR 5 cut(s) 233, 235, 291, 340, 364
FaqI GGGAC 2 cut(s) 239, 258
FatI CATG 2 cut(s) 338, 362
FauI CCCGC 2 cut(s) 19, 136
FauNDI CATATG 1 cut(s) 233
Fnu4HI GCNGC 7 cut(s) 15, 245, 248, 251, 254, 257, 260
Fsp4HI GCNGC 7 cut(s) 15, 245, 248, 251, 254, 257, 260
GluI GCNGC 7 cut(s) 15, 245, 248, 251, 254, 257, 260
HaeIII GGCC 1 cut(s) 7
HapII CCGG 1 cut(s) 241
Hin1II CATG 2 cut(s) 342, 366
HindIII AAGCTT 1 cut(s) 151
HinfI GANTC 1 cut(s) 50
HpaII CCGG 1 cut(s) 241
Hpy188I TCNGA 2 cut(s) 49, 307
Hpy188III TCNNGA 1 cut(s) 172
Hpy99I CGWCG 2 cut(s) 58, 71
HpyCH4IV ACGT 1 cut(s) 69
HpyCH4V TGCA 2 cut(s) 207, 289
HpyF10VI GCNNNNNNNGC 4 cut(s) 250, 253, 256, 259
HpyF3I CTNAG 1 cut(s) 48
HpySE526I ACGT 1 cut(s) 69
Hsp92II CATG 2 cut(s) 342, 366
KflI GGGWCCC 1 cut(s) 272
Kzo9I GATC 1 cut(s) 44
LpnPI CCDG 5 cut(s) 83, 193, 254, 254, 264
Lsp1109I GCAGC 7 cut(s) 26, 256, 259, 262, 265, 268, 271
LweI GCATC 1 cut(s) 271
MaeII ACGT 1 cut(s) 69
MaeIII GTNAC 1 cut(s) 100
MalI GATC 1 cut(s) 46
MboI GATC 1 cut(s) 44
MboII GAAGA 1 cut(s) 97
MluCI AATT 4 cut(s) 161, 175, 181, 201
MlyI GAGTC 1 cut(s) 59
MmeI TCCRAC 1 cut(s) 330
MnlI CCTC 5 cut(s) 18, 54, 286, 309, 339
MspI CCGG 1 cut(s) 241
MwoI GCNNNNNNNGC 4 cut(s) 250, 253, 256, 259
NdeI CATATG 1 cut(s) 233
NdeII GATC 1 cut(s) 44
NlaIII CATG 2 cut(s) 342, 366
NlaIV GGNNCC 4 cut(s) 170, 239, 273, 274
NmuCI GTSAC 1 cut(s) 100
NspV TTCGAA 2 cut(s) 179, 185
PceI AGGCCT 1 cut(s) 7
PkrI GCNGC 7 cut(s) 16, 246, 249, 252, 255, 258, 261
PleI GAGTC 1 cut(s) 58
PpsI GAGTC 1 cut(s) 58
PpuMI RGGWCCY 1 cut(s) 272
Psp5II RGGWCCY 1 cut(s) 272
PspN4I GGNNCC 4 cut(s) 170, 239, 273, 274
PspPI GGNCC 2 cut(s) 272, 326
PspPPI RGGWCCY 1 cut(s) 272
SatI GCNGC 7 cut(s) 15, 245, 248, 251, 254, 257, 260
Sau3AI GATC 1 cut(s) 44
Sau96I GGNCC 2 cut(s) 272, 326
SchI GAGTC 1 cut(s) 59
SetI ASST 7 cut(s) 65, 72, 102, 133, 139, 155, 301
SfaNI GCATC 1 cut(s) 271
SfuI TTCGAA 2 cut(s) 179, 185
SinI GGWCC 2 cut(s) 272, 326
Sse9I AATT 4 cut(s) 161, 175, 181, 201
SseBI AGGCCT 1 cut(s) 7
SsiI CCGC 3 cut(s) 12, 143, 282
StuI AGGCCT 1 cut(s) 7
TaiI ACGT 1 cut(s) 72
TaqI TCGA 4 cut(s) 66, 83, 179, 185
TaqII GACCGA 1 cut(s) 69
TasI AATT 4 cut(s) 161, 175, 181, 201
TscAI CASTG 1 cut(s) 109
TseFI GTSAC 1 cut(s) 100
TseI GCWGC 7 cut(s) 14, 244, 247, 250, 253, 256, 259
Tsp45I GTSAC 1 cut(s) 100
TspDTI ATGAA 1 cut(s) 327
TspGWI ACGGA 1 cut(s) 140
TspRI CASTG 1 cut(s) 109
VpaK11BI GGWCC 2 cut(s) 272, 326
XapI RAATTY 3 cut(s) 175, 181, 201
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.