Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Forward (+)

8894380 .. 8897124

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G25360.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2373 bp

ATGCAACCGAATCCAGACCTTGTCCGAGCCATCGCCAACCGCTACGCCGCGAATCTCCGCCTCTGTTTGCCGCTCCGACGAACATCTCTGCAGCTCGCGCGAGCCGTCCATGGAAATATCATTACTTTCGGGTTTCAGCCACGTGCCCATATCCTGAACCGTTTGATTGATGTTTATTGTAAATCGTCAGAGCTAAATTATGCACGCCAACTGTTCGATGAAATCTCTGAACCAGATAAAATTGCTAGAACCACCATGGTCTCTGGCTATTGTGCTTCCGGTGATATCACCCTCGCTCGAGGGGTTTTTGAGAAAGCTCCTGTGTGTATGCGTGATACTGTAATGTACAATGCGATGATCACTGGCTTTTCACATAACAATGATGGTTACTCTGCTATTAACCTCTTTTGTAAGATGAAGCATGAAGGATTCAAACCTGACAACTTCACTTTCGCAAGTGTTCTCGCGGGTTTAGCGTTAGTTGCCGATGACGAGAAGCAATGTGTGCAATTTCATGCCGCAGCTCTGAAATCTGGTGCTGGTTATATTACTTCGGTTTCTAACGCTCTGGTGTCTGTGTATTCGAAATGTGCGTCTTCTCCGTCTCTGCTACATTCAGCTAGAAAAGTGTTTGATGAGATTCTTGAGAAAGATGAGAGGTCGTGGACGACTATGATGACGGGTTATGTAAAGAATGGTTATTTTGATTTAGGGGAAGAGTTGCTTGAGGGGATGGACGACAATATGAAGCTGGTTGCTTATAATGCTATGATTTCTGGTTATGTTAATCGTGGTTTTTATCAGGAGGCATTGGAGATGGTAAGAAGGATGGTTTCATCTGGAATTGAGCTCGATGAGTTTACATATCCTAGCGTTATTAGGGCGTGTGCCACAGCTGGATTGCTTCAGTTGGGAAAGCAAGTTCATGCTTATGTATTAAGAAGGGAGGATTTCTCGTTTCATTTTGACAATTCGTTAGTTTCGTTATACTACAAATGCGGTAAGTTTGATGAGGCGAGAGCCATTTTTGAGAAAATGCCGGCAAAAGACTTGGTTTCCTGGAATGCGTTGTTGTCAGGGTATGTTAGTTCTGGGCACATAGGTGAGGCGAAGTTGATTTTCAAAGAGATGAAAGAGAAGAATATTCTATCATGGATGATAATGATATCCGGGTTAGCTGAAAATGGGTTTGGAGAAGAAGGTTTGAAGCTGTTTTCTTGTATGAAGAGAGAAGGTTTCGAGCCTTGTGATTACGCTTTTTCCGGGGCAATCAAATCATGTGCCGTGCTGGGAGCATATTGCAATGGGCAACAGTACCATGCACAGTTGCTTAAAATAGGGTTTGACTCTAGCCTCTCTGCTGGAAACGCTCTGATTACAATGTATGCGAAATGCGGGGTTGTGGAGGAAGCTCGACAGGTGTTTCGAACTATGCCTTGTCTGGATTCGGTTTCCTGGAATGCGTTGATTGCTGCATTGGGACAGCATGGCCATGGTGCTGAAGCAGTAGATGTGTATGAGGAGATGCTAAAGAAAGGGATAAGACCGGATCGGATTACGTTGCTTACAGTTTTGACAGCATGTAGCCACGCGGGTTTAGTGGACCAGGGACGGAAATATTTTGATTCTATGGAGACTGTTTACCGTATACCTCCAGGTGCAGATCATTACGCAAGGCTGATCGATTTGCTTTGTCGTTCTGGGAAATTCTCTGATGCGGAAAGTGTAATCGAATCATTACCTTTCAAACCTACTGCAGAAATCTGGGAAGCTCTTCTTTCTGGTTGCAGAGTGCATGGAAACATGGAACTAGGGATCATCGCTGCAGACAAACTCTTCGGTCTCATACCAGAACATGATGGGACATACATGCTCTTATCAAACATGCACGCAGCTACTGGCCAGTGGGAGGAAGTGGCAAGGGTACGTAAACTAATGCGGGATCGAGGTGTAAAAAAAGAAGTAGCTTGTAGTTGGATTGAAATGGAGACACAAGTGCATACATTTCTAGTTGATGATACATCACATCCAGAAGCAGAAGCTGTTTACATCTATCTTCAAGACCTGGGTAAAGAGATGAGGAGACTCGGGTATGTACCAGACACGAGCTTCGTGTTGCACGACGTAGAGTCTGATGGTCACAAGGAAGATATGTTGACAACTCATAGTGAGAAGATTGCGGTTGCTTTTGGGCTAATGAAACTTCCTCCGGGAACAACTATTAGGATTTTCAAGAACTTGAGGACTTGTGGAGATTGCCATAACTTCTTCAGGTTCTTGTCGTGGGTGGTGCAGCGAGACATTATCTTGAGAGACAGGAAGAGGTTTCATCATTTCCGGAATGGCGAGTGTTCTTGTGGTAACTTCTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

790

Amino Acids

88.58

Weight (kDa)

6.43

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	111 - 159	2.6e-12	PPR repeat family
PPR_2	PF13041	251 - 297	5e-11	PPR repeat family
PPR	PF01535	252 - 282	8.6e-08	PPR repeat
PPR_2	PF13041	350 - 382	9.2e-07	PPR repeat family
PPR	PF01535	352 - 382	1.1e-07	PPR repeat
PPR_2	PF13041	381 - 428	3.3e-06	PPR repeat family
PPR	PF01535	384 - 413	7e-06	PPR repeat
PPR_2	PF13041	482 - 529	3.5e-12	PPR repeat family
PPR	PF01535	484 - 514	1.8e-07	PPR repeat
E_motif	PF20431	599 - 661	1.9e-17	E motif
DYW_deaminase	PF14432	697 - 790	1.8e-40	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	762
AccBSI	CCGCTC	1 cut(s)	73
AccI	GTMKAC	1 cut(s)	1648
AccII	CGCG	5 cut(s)	50, 98, 100, 467, 1592
AccIII	TCCGGA	1 cut(s)	2337
AclWI	GGATC	3 cut(s)	1557, 1823, 1950
AcoI	YGGCCR	2 cut(s)	1489, 1900
AcsI	RAATTY	1 cut(s)	1706
AcuI	CTGAAG	3 cut(s)	890, 1521, 2254
AcvI	CACGTG	1 cut(s)	143
AfaI	GTAC	4 cut(s)	347, 1316, 1926, 2097
AfiI	CCNNNNNNNGG	1 cut(s)	1909
AgsI	TTSAA	7 cut(s)	433, 1123, 1207, 1747, 1982, 2060, 2233
AhdI	GACNNNNNGTC	1 cut(s)	2128
AjnI	CCWGG	5 cut(s)	1058, 1454, 1605, 1654, 2064
AjuI	GAANNNNNNNTTGG	2 cut(s)	1173, 1205
AleI	CACNNNNGTG	1 cut(s)	1101
AloI	GAACNNNNNNTCC	2 cut(s)	906, 938
Alw21I	GWGCWC	1 cut(s)	852
Alw26I	GTCTC	8 cut(s)	265, 609, 1628, 1847, 1982, 2077, 2292, 2307
AlwI	GGATC	3 cut(s)	1557, 1823, 1950
AlwNI	CAGNNNCTG	2 cut(s)	1898, 2042
Ama87I	CYCGRG	2 cut(s)	297, 2087
Aor13HI	TCCGGA	1 cut(s)	2337
AoxI	GGCC	2 cut(s)	1489, 1900
ApeKI	GCWGC	6 cut(s)	91, 521, 1472, 1823, 1892, 2293
ApoI	RAATTY	1 cut(s)	1706
ArsI	GACNNNNNNTTYG	8 cut(s)	578, 610, 1407, 1439, 1820, 1852, 2093, 2125
Asp700I	GAANNNNTTC	1 cut(s)	1773
AspLEI	GCGC	1 cut(s)	100
AspS9I	GGNCC	1 cut(s)	1603
AsuC2I	CCSGG	3 cut(s)	1171, 1264, 2211
AsuHPI	GGTGA	3 cut(s)	280, 293, 1115
AsuII	TTCGAA	2 cut(s)	584, 1426
AvaI	CYCGRG	2 cut(s)	297, 2087
AvaII	GGWCC	1 cut(s)	1603
BaeGI	GKGCMC	2 cut(s)	148, 1098
BalI	TGGCCA	2 cut(s)	1491, 1902
BanII	GRGCYC	1 cut(s)	852
BauI	CACGAG	1 cut(s)	2104
BbrPI	CACGTG	1 cut(s)	143
BbsI	GAAGAC	1 cut(s)	588
Bbv12I	GWGCWC	1 cut(s)	852
BbvI	GCAGC	6 cut(s)	103, 533, 1459, 1810, 1904, 2305
BccI	CCATC	7 cut(s)	38, 377, 727, 811, 823, 1853, 2129
BceAI	ACGGC	2 cut(s)	89, 1268
BciT130I	CCWGG	5 cut(s)	1060, 1456, 1607, 1656, 2066
BclI	TGATCA	1 cut(s)	357
BcnI	CCSGG	3 cut(s)	1171, 1264, 2211
BcoDI	GTCTC	8 cut(s)	265, 609, 1628, 1847, 1982, 2077, 2292, 2307
BfaI	CTAG	6 cut(s)	246, 621, 870, 1350, 1811, 2009
BfmI	CTRYAG	3 cut(s)	89, 1755, 1824
BisI	GCNGC	9 cut(s)	48, 71, 92, 519, 522, 1473, 1824, 1893, 2294
BlsI	GCNGC	9 cut(s)	49, 72, 93, 520, 523, 1474, 1825, 1894, 2295
Bme1390I	CCNGG	8 cut(s)	1060, 1171, 1264, 1456, 1607, 1656, 2066, 2211
Bme18I	GGWCC	1 cut(s)	1603
BmeRI	GACNNNNNGTC	1 cut(s)	2128
BmeT110I	CYCGRG	2 cut(s)	297, 2087
BmgT120I	GGNCC	1 cut(s)	1603
BmrFI	CCNGG	8 cut(s)	1060, 1171, 1264, 1456, 1607, 1656, 2066, 2211
BmsI	GCATC	2 cut(s)	1515, 1705
BpiI	GAAGAC	1 cut(s)	588
BplI	GAGNNNNNCTC	2 cut(s)	938, 970
BpmI	CTGGAG	1 cut(s)	1638
Bpu14I	TTCGAA	2 cut(s)	584, 1426
BpuEI	CTTGAG	4 cut(s)	665, 746, 2260, 2329
BpuMI	CCSGG	3 cut(s)	1171, 1264, 2211
Bsa29I	ATCGAT	1 cut(s)	1683
BsaAI	YACGTR	2 cut(s)	143, 1928
BsaI	GGTCTC	2 cut(s)	265, 1847
BsaJI	CCNNGG	6 cut(s)	109, 255, 1263, 1492, 1606, 2065
BsaWI	WCCGGW	3 cut(s)	278, 1546, 2337
Bsc4I	CCNNNNNNNGG	1 cut(s)	1909
Bse118I	RCCGGY	1 cut(s)	1039
Bse1I	ACTGG	3 cut(s)	367, 1903, 1903
Bse3DI	GCAATG	2 cut(s)	506, 1309
BseAI	TCCGGA	1 cut(s)	2337
BseBI	CCWGG	5 cut(s)	1060, 1456, 1607, 1656, 2066
BseCI	ATCGAT	1 cut(s)	1683
BseDI	CCNNGG	6 cut(s)	109, 255, 1263, 1492, 1606, 2065
BseGI	GGATG	4 cut(s)	738, 834, 1161, 2026
BseLI	CCNNNNNNNGG	1 cut(s)	1909
BseMI	GCAATG	2 cut(s)	506, 1309
BseNI	ACTGG	3 cut(s)	367, 1903, 1903
BseRI	GAGGAG	2 cut(s)	1535, 2095
BseSI	GKGCMC	2 cut(s)	148, 1098
BseXI	GCAGC	6 cut(s)	103, 533, 1459, 1810, 1904, 2305
BseYI	CCCAGC	1 cut(s)	1288
BsgI	GTGCAG	2 cut(s)	1680, 2312
Bsh1236I	CGCG	5 cut(s)	50, 98, 100, 467, 1592
BshFI	GGCC	2 cut(s)	1491, 1902
BshVI	ATCGAT	1 cut(s)	1683
BsiHKAI	GWGCWC	1 cut(s)	852
BsiHKCI	CYCGRG	2 cut(s)	297, 2087
BsiSI	CCGG	7 cut(s)	279, 1040, 1170, 1263, 1547, 2210, 2338
BslFI	GGGAC	3 cut(s)	1494, 1623, 1876
BslI	CCNNNNNNNGG	1 cut(s)	1909
BsmAI	GTCTC	8 cut(s)	265, 609, 1628, 1847, 1982, 2077, 2292, 2307
BsmBI	CGTCTC	1 cut(s)	609
BsmFI	GGGAC	3 cut(s)	1494, 1623, 1876
BsmI	GAATGC	2 cut(s)	1069, 1465
BsnI	GGCC	2 cut(s)	1491, 1902
Bso31I	GGTCTC	2 cut(s)	265, 1847
BsoBI	CYCGRG	2 cut(s)	297, 2087
Bsp119I	TTCGAA	2 cut(s)	584, 1426
Bsp1286I	GDGCHC	3 cut(s)	148, 852, 1098
Bsp13I	TCCGGA	1 cut(s)	2337
Bsp1407I	TGTACA	1 cut(s)	345
Bsp143I	GATC	6 cut(s)	357, 1549, 1663, 1680, 1815, 1942
Bsp19I	CCATGG	3 cut(s)	109, 255, 1492
BspANI	GGCC	2 cut(s)	1491, 1902
BspDI	ATCGAT	1 cut(s)	1683
BspEI	TCCGGA	1 cut(s)	2337
BspFNI	CGCG	5 cut(s)	50, 98, 100, 467, 1592
BspMAI	CTGCAG	3 cut(s)	93, 1759, 1828
BspPI	GGATC	3 cut(s)	1557, 1823, 1950
BspQI	GCTCTTC	1 cut(s)	1779
BspT104I	TTCGAA	2 cut(s)	584, 1426
BspTNI	GGTCTC	2 cut(s)	265, 1847
BsrBI	CCGCTC	1 cut(s)	73
BsrDI	GCAATG	2 cut(s)	506, 1309
BsrFI	RCCGGY	1 cut(s)	1039
BsrGI	TGTACA	1 cut(s)	345
BsrI	ACTGG	3 cut(s)	367, 1903, 1903
BssAI	RCCGGY	1 cut(s)	1039
BssECI	CCNNGG	6 cut(s)	109, 255, 1263, 1492, 1606, 2065
BssMI	GATC	6 cut(s)	357, 1549, 1663, 1680, 1815, 1942
BssNAI	GTATAC	1 cut(s)	1649
BssSI	CACGAG	1 cut(s)	2104
BssT1I	CCWWGG	3 cut(s)	109, 255, 1492
Bst1107I	GTATAC	1 cut(s)	1649
Bst2BI	CACGAG	1 cut(s)	2104
Bst2UI	CCWGG	5 cut(s)	1060, 1456, 1607, 1656, 2066
Bst4CI	ACNGT	8 cut(s)	161, 213, 340, 1314, 1326, 1570, 1639, 1646
Bst6I	CTCTTC	5 cut(s)	711, 1220, 1779, 1841, 2315
BstAPI	GCANNNNNTGC	1 cut(s)	505
BstAUI	TGTACA	1 cut(s)	345
BstBAI	YACGTR	2 cut(s)	143, 1928
BstBI	TTCGAA	2 cut(s)	584, 1426
BstC8I	GCNNGC	5 cut(s)	96, 102, 205, 1041, 1890
BstDSI	CCRYGG	3 cut(s)	109, 255, 1492
BstF5I	GGATG	4 cut(s)	738, 834, 1161, 2026
BstFNI	CGCG	5 cut(s)	50, 98, 100, 467, 1592
BstHHI	GCGC	1 cut(s)	100
BstKTI	GATC	6 cut(s)	360, 1552, 1666, 1683, 1818, 1945
BstMAI	GTCTC	8 cut(s)	265, 609, 1628, 1847, 1982, 2077, 2292, 2307
BstMBI	GATC	6 cut(s)	357, 1549, 1663, 1680, 1815, 1942
BstMWI	GCNNNNNNNGC	7 cut(s)	97, 473, 482, 505, 764, 1367, 1469
BstNI	CCWGG	5 cut(s)	1060, 1456, 1607, 1656, 2066
BstNSI	RCATGY	3 cut(s)	1584, 1873, 1888
BstSCI	CCNGG	8 cut(s)	1058, 1169, 1262, 1454, 1605, 1654, 2064, 2209
BstSFI	CTRYAG	3 cut(s)	89, 1755, 1824
BstSLI	GKGCMC	2 cut(s)	148, 1098
BstSNI	TACGTA	1 cut(s)	1928
BstUI	CGCG	5 cut(s)	50, 98, 100, 467, 1592
BstV1I	GCAGC	6 cut(s)	103, 533, 1459, 1810, 1904, 2305
BstV2I	GAAGAC	1 cut(s)	588
BstZ17I	GTATAC	1 cut(s)	1649
Bsu15I	ATCGAT	1 cut(s)	1683
BsuRI	GGCC	2 cut(s)	1491, 1902
BsuTUI	ATCGAT	1 cut(s)	1683
BtgI	CCRYGG	3 cut(s)	109, 255, 1492
BtgZI	GCGATG	3 cut(s)	16, 368, 1804
BtsCI	GGATG	4 cut(s)	738, 834, 1161, 2026
BtsIMutI	CAGTG	2 cut(s)	360, 1910
Cac8I	GCNNGC	5 cut(s)	96, 102, 205, 1041, 1890
CaiI	CAGNNNCTG	2 cut(s)	1898, 2042
CfoI	GCGC	1 cut(s)	100
Cfr10I	RCCGGY	1 cut(s)	1039
Cfr13I	GGNCC	1 cut(s)	1603
ClaI	ATCGAT	1 cut(s)	1683
CseI	GACGC	1 cut(s)	582
Csp6I	GTAC	4 cut(s)	346, 1315, 1925, 2096
CviQI	GTAC	4 cut(s)	346, 1315, 1925, 2096
DpnI	GATC	6 cut(s)	359, 1551, 1665, 1682, 1817, 1944
DpnII	GATC	6 cut(s)	357, 1549, 1663, 1680, 1815, 1942
DriI	GACNNNNNGTC	1 cut(s)	2128
EaeI	YGGCCR	2 cut(s)	1489, 1900
Eam1104I	CTCTTC	5 cut(s)	711, 1220, 1779, 1841, 2315
Eam1105I	GACNNNNNGTC	1 cut(s)	2128
EarI	CTCTTC	5 cut(s)	711, 1220, 1779, 1841, 2315
EciI	GGCGGA	1 cut(s)	47
Ecl136II	GAGCTC	1 cut(s)	850
Eco105I	TACGTA	1 cut(s)	1928
Eco130I	CCWWGG	3 cut(s)	109, 255, 1492
Eco24I	GRGCYC	1 cut(s)	852
Eco31I	GGTCTC	2 cut(s)	265, 1847
Eco32I	GATATC	2 cut(s)	286, 1167
Eco47I	GGWCC	1 cut(s)	1603
Eco53kI	GAGCTC	1 cut(s)	850
Eco57I	CTGAAG	3 cut(s)	890, 1521, 2254
Eco72I	CACGTG	1 cut(s)	143
Eco88I	CYCGRG	2 cut(s)	297, 2087
EcoICRI	GAGCTC	1 cut(s)	850
EcoRII	CCWGG	5 cut(s)	1058, 1454, 1605, 1654, 2064
EcoRV	GATATC	2 cut(s)	286, 1167
EcoT14I	CCWWGG	3 cut(s)	109, 255, 1492
EcoT38I	GRGCYC	1 cut(s)	852
ErhI	CCWWGG	3 cut(s)	109, 255, 1492
Esp3I	CGTCTC	1 cut(s)	609
FalI	AAGNNNNNCTT	4 cut(s)	708, 740, 1761, 1793
FaqI	GGGAC	3 cut(s)	1494, 1623, 1876
FauI	CCCGC	4 cut(s)	460, 1388, 1585, 1932
FbaI	TGATCA	1 cut(s)	357
FblI	GTMKAC	1 cut(s)	1648
Fnu4HI	GCNGC	9 cut(s)	48, 71, 92, 519, 522, 1473, 1824, 1893, 2294
FokI	GGATG	4 cut(s)	745, 841, 1168, 2013
FriOI	GRGCYC	1 cut(s)	852
Fsp4HI	GCNGC	9 cut(s)	48, 71, 92, 519, 522, 1473, 1824, 1893, 2294
FspBI	CTAG	6 cut(s)	246, 621, 870, 1350, 1811, 2009
GlaI	GCGC	1 cut(s)	99
GluI	GCNGC	9 cut(s)	48, 71, 92, 519, 522, 1473, 1824, 1893, 2294
GsaI	CCCAGC	1 cut(s)	1292
GsuI	CTGGAG	1 cut(s)	1638
HaeIII	GGCC	2 cut(s)	1491, 1902
HapII	CCGG	7 cut(s)	279, 1040, 1170, 1263, 1547, 2210, 2338
HgaI	GACGC	1 cut(s)	582
HhaI	GCGC	1 cut(s)	100
Hin6I	GCGC	1 cut(s)	98
HinP1I	GCGC	1 cut(s)	98
HincII	GTYRAC	1 cut(s)	2157
HindII	GTYRAC	1 cut(s)	2157
HpaII	CCGG	7 cut(s)	279, 1040, 1170, 1263, 1547, 2210, 2338
HphI	GGTGA	3 cut(s)	280, 293, 1115
Hpy166II	GTNNAC	8 cut(s)	666, 861, 1603, 1642, 1649, 1931, 2047, 2157
Hpy188I	TCNGA	9 cut(s)	26, 77, 190, 229, 528, 1374, 1554, 1714, 2134
Hpy8I	GTNNAC	8 cut(s)	666, 861, 1603, 1642, 1649, 1931, 2047, 2157
Hpy99I	CGWCG	2 cut(s)	81, 2126
HpyAV	CCTTC	5 cut(s)	419, 819, 936, 1193, 1226
HpyCH4III	ACNGT	8 cut(s)	161, 213, 340, 1314, 1326, 1570, 1639, 1646
HpyCH4IV	ACGT	4 cut(s)	142, 1559, 1927, 2124
HpyF10VI	GCNNNNNNNGC	7 cut(s)	97, 473, 482, 505, 764, 1367, 1469
HpySE526I	ACGT	4 cut(s)	142, 1559, 1927, 2124
HspAI	GCGC	1 cut(s)	98
Kpn2I	TCCGGA	1 cut(s)	2337
KroI	GCCGGC	1 cut(s)	1039
KroNI	GCCGGC	1 cut(s)	1041
Ksp22I	TGATCA	1 cut(s)	357
Kzo9I	GATC	6 cut(s)	357, 1549, 1663, 1680, 1815, 1942
LguI	GCTCTTC	1 cut(s)	1779
LmnI	GCTCC	3 cut(s)	78, 322, 1292
Lsp1109I	GCAGC	6 cut(s)	103, 533, 1459, 1810, 1904, 2305
LweI	GCATC	2 cut(s)	1515, 1705
MaeI	CTAG	6 cut(s)	246, 621, 870, 1350, 1811, 2009
MaeII	ACGT	4 cut(s)	142, 1559, 1927, 2124
MaeIII	GTNAC	3 cut(s)	386, 2138, 2360
MalI	GATC	6 cut(s)	359, 1551, 1665, 1682, 1817, 1944
MbiI	CCGCTC	1 cut(s)	73
MboI	GATC	6 cut(s)	357, 1549, 1663, 1680, 1815, 1942
MhlI	GDGCHC	3 cut(s)	148, 852, 1098
MlsI	TGGCCA	2 cut(s)	1491, 1902
MluCI	AATT	6 cut(s)	196, 240, 509, 843, 970, 1706
MluNI	TGGCCA	2 cut(s)	1491, 1902
MlyI	GAGTC	3 cut(s)	1340, 2079, 2138
MmeI	TCCRAC	2 cut(s)	100, 1955
Mox20I	TGGCCA	2 cut(s)	1491, 1902
MroI	TCCGGA	1 cut(s)	2337
MroNI	GCCGGC	1 cut(s)	1039
MroXI	GAANNNNTTC	1 cut(s)	1773
MscI	TGGCCA	2 cut(s)	1491, 1902
MseI	TTAA	4 cut(s)	399, 786, 938, 1332
MslI	CAYNNNNRTG	4 cut(s)	378, 930, 1101, 1491
Msp20I	TGGCCA	2 cut(s)	1491, 1902
MspA1I	CMGCKG	1 cut(s)	896
MspI	CCGG	7 cut(s)	279, 1040, 1170, 1263, 1547, 2210, 2338
MspR9I	CCNGG	8 cut(s)	1060, 1171, 1264, 1456, 1607, 1656, 2066, 2211
Mva1269I	GAATGC	2 cut(s)	1069, 1465
MvaI	CCWGG	5 cut(s)	1060, 1456, 1607, 1656, 2066
MvnI	CGCG	5 cut(s)	50, 98, 100, 467, 1592
MwoI	GCNNNNNNNGC	7 cut(s)	97, 473, 482, 505, 764, 1367, 1469
NaeI	GCCGGC	1 cut(s)	1041
NciI	CCSGG	3 cut(s)	1171, 1264, 2211
NcoI	CCATGG	3 cut(s)	109, 255, 1492
NdeII	GATC	6 cut(s)	357, 1549, 1663, 1680, 1815, 1942
NgoMIV	GCCGGC	1 cut(s)	1039
NmuCI	GTSAC	1 cut(s)	2138
NspI	RCATGY	3 cut(s)	1584, 1873, 1888
NspV	TTCGAA	2 cut(s)	584, 1426
OliI	CACNNNNGTG	1 cut(s)	1101
PaeR7I	CTCGAG	1 cut(s)	297
PciSI	GCTCTTC	1 cut(s)	1779
PcsI	WCGNNNNNNNCGW	4 cut(s)	102, 590, 980, 2118
PctI	GAATGC	2 cut(s)	1069, 1465
PdiI	GCCGGC	1 cut(s)	1041
PdmI	GAANNNNTTC	1 cut(s)	1773
PfeI	GAWTC	7 cut(s)	10, 52, 429, 640, 1445, 1625, 1733
PflFI	GACNNNGTC	1 cut(s)	20
PfoI	TCCNGGA	3 cut(s)	1058, 1454, 2209
PkrI	GCNGC	9 cut(s)	49, 72, 93, 520, 523, 1474, 1825, 1894, 2295
PleI	GAGTC	3 cut(s)	1340, 2079, 2137
PmaCI	CACGTG	1 cut(s)	143
PmlI	CACGTG	1 cut(s)	143
PpsI	GAGTC	3 cut(s)	1340, 2079, 2137
Ppu21I	YACGTR	2 cut(s)	143, 1928
PsiI	TTATAA	1 cut(s)	762
Psp124BI	GAGCTC	1 cut(s)	852
Psp6I	CCWGG	5 cut(s)	1058, 1454, 1605, 1654, 2064
PspCI	CACGTG	1 cut(s)	143
PspFI	CCCAGC	1 cut(s)	1288
PspGI	CCWGG	5 cut(s)	1058, 1454, 1605, 1654, 2064
PspPI	GGNCC	1 cut(s)	1603
PspXI	VCTCGAGB	1 cut(s)	297
PstI	CTGCAG	3 cut(s)	93, 1759, 1828
PstNI	CAGNNNCTG	2 cut(s)	1898, 2042
PsyI	GACNNNGTC	1 cut(s)	20
PvuII	CAGCTG	1 cut(s)	896
RsaI	GTAC	4 cut(s)	347, 1316, 1926, 2097
RsaNI	GTAC	4 cut(s)	346, 1315, 1925, 2096
RseI	CAYNNNNRTG	4 cut(s)	378, 930, 1101, 1491
SacI	GAGCTC	1 cut(s)	852
SapI	GCTCTTC	1 cut(s)	1779
SaqAI	TTAA	4 cut(s)	399, 786, 938, 1332
SatI	GCNGC	9 cut(s)	48, 71, 92, 519, 522, 1473, 1824, 1893, 2294
Sau3AI	GATC	6 cut(s)	357, 1549, 1663, 1680, 1815, 1942
Sau96I	GGNCC	1 cut(s)	1603
SchI	GAGTC	3 cut(s)	1340, 2079, 2138
ScrFI	CCNGG	8 cut(s)	1060, 1171, 1264, 1456, 1607, 1656, 2066, 2211
SduI	GDGCHC	3 cut(s)	148, 852, 1098
SfaNI	GCATC	2 cut(s)	1515, 1705
SfcI	CTRYAG	3 cut(s)	89, 1755, 1824
Sfr274I	CTCGAG	1 cut(s)	297
SfuI	TTCGAA	2 cut(s)	584, 1426
SinI	GGWCC	1 cut(s)	1603
SlaI	CTCGAG	1 cut(s)	297
SmiMI	CAYNNNNRTG	4 cut(s)	378, 930, 1101, 1491
SmlI	CTYRAG	5 cut(s)	297, 644, 725, 2239, 2308
SmoI	CTYRAG	5 cut(s)	297, 644, 725, 2239, 2308
SnaBI	TACGTA	1 cut(s)	1928
Sse9I	AATT	6 cut(s)	196, 240, 509, 843, 970, 1706
SspI	AATATT	2 cut(s)	1144, 1619
SspMI	CTAG	6 cut(s)	246, 621, 870, 1350, 1811, 2009
SstI	GAGCTC	1 cut(s)	852
StyD4I	CCNGG	8 cut(s)	1058, 1169, 1262, 1454, 1605, 1654, 2064, 2209
StyI	CCWWGG	3 cut(s)	109, 255, 1492
TaaI	ACNGT	8 cut(s)	161, 213, 340, 1314, 1326, 1570, 1639, 1646
TaiI	ACGT	4 cut(s)	145, 1562, 1930, 2127
TaqII	GACCGA	1 cut(s)	1829
TasI	AATT	6 cut(s)	196, 240, 509, 843, 970, 1706
TatI	WGTACW	1 cut(s)	345
TauI	GCSGC	3 cut(s)	50, 73, 521
TfiI	GAWTC	7 cut(s)	10, 52, 429, 640, 1445, 1625, 1733
Tru1I	TTAA	4 cut(s)	399, 786, 938, 1332
Tru9I	TTAA	4 cut(s)	399, 786, 938, 1332
TscAI	CASTG	2 cut(s)	367, 1910
TseFI	GTSAC	1 cut(s)	2138
TseI	GCWGC	6 cut(s)	91, 521, 1472, 1823, 1892, 2293
Tsp45I	GTSAC	1 cut(s)	2138
TspGWI	ACGGA	2 cut(s)	591, 1627
TspRI	CASTG	2 cut(s)	367, 1910
Tth111I	GACNNNGTC	1 cut(s)	20
VpaK11BI	GGWCC	1 cut(s)	1603
XapI	RAATTY	1 cut(s)	1706
XceI	RCATGY	3 cut(s)	1584, 1873, 1888
XhoI	CTCGAG	1 cut(s)	297
XmiI	GTMKAC	1 cut(s)	1648
XmnI	GAANNNNTTC	1 cut(s)	1773
XspI	CTAG	6 cut(s)	246, 621, 870, 1350, 1811, 2009

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.