Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0027650.1

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 683

Gene Structure 682 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0027650.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 682 bp

atgctgcctccaacgccccacctcatactctttagcccgaaccatccacgcccacatgatcacttccggcttccacccacgtggccatatcctcaaccgtttgatcgacgtctactgcaaatcttcaaatcttcgctacgcactccaccgttcgaccaaattcccaacccggacatcgtcgccagaacaactctggtttcggcgtattccggcgtcggggacgtcacgctggcccggagagtgttcagtgaaactccgtccagcatgagagacactgtcagctacaatgccatgatcgcaggctactctcataatagggacggcaatgctgccgttgagctgtttcgagaaatgatgcgaggcggttttcggcccgatgagtttaccttcaccagtgtgctgagtggtctggcgcttatagtggaggaggagaagcaatgccagcagctgcattgtgcaattgttaagtctggagcattgttggccactttggtgtcgaatgcgttggtgtctgtgtatgttaagtgtgcttcttcaccgttggtgtcttcgtcgtcggtggtggtgcctgcggcgaggaaggtgtttgatgaaatgcctacgagagatgagctgtcgtggacgacgatgattactggttatgtgaggaatgaggaccttgatggagctcggcagttgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

227

Amino Acids

25.28

Weight (kDa)

7.01

Isoelectric Point (pI)

41.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	112, 225
AccB1I	GGYRCC	1 cut(s)	565
AccI	GTMKAC	1 cut(s)	112
AciI	CCGC	2 cut(s)	363, 572
AcoI	YGGCCR	2 cut(s)	83, 483
AcsI	RAATTY	1 cut(s)	159
AcvI	CACGTG	1 cut(s)	81
AcyI	GRCGYC	3 cut(s)	109, 213, 222
AfiI	CCNNNNNNNGG	1 cut(s)	216
AgsI	TTSAA	1 cut(s)	127
AleI	CACNNNNGTG	3 cut(s)	79, 395, 491
AluBI	AGCT	5 cut(s)	282, 340, 448, 613, 668
AluI	AGCT	5 cut(s)	282, 340, 448, 613, 668
Alw21I	GWGCWC	1 cut(s)	670
Alw26I	GTCTC	1 cut(s)	264
AlwNI	CAGNNNCTG	1 cut(s)	448
AoxI	GGCC	4 cut(s)	83, 231, 371, 483
ApeKI	GCWGC	4 cut(s)	4, 329, 445, 448
ApoI	RAATTY	1 cut(s)	159
AspLEI	GCGC	1 cut(s)	415
AspS9I	GGNCC	3 cut(s)	232, 372, 655
AsuC2I	CCSGG	2 cut(s)	170, 235
AsuHPI	GGTGA	2 cut(s)	382, 528
AvaII	GGWCC	1 cut(s)	655
BalI	TGGCCA	2 cut(s)	85, 485
BanI	GGYRCC	1 cut(s)	565
BanII	GRGCYC	1 cut(s)	670
BbrPI	CACGTG	1 cut(s)	81
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	670
BbvI	GCAGC	3 cut(s)	316, 435, 457
BccI	CCATC	2 cut(s)	51, 656
BceAI	ACGGC	2 cut(s)	317, 337
BclI	TGATCA	1 cut(s)	58
BcnI	CCSGG	2 cut(s)	170, 235
BcoDI	GTCTC	1 cut(s)	264
BfaI	CTAG	1 cut(s)	680
BfoI	RGCGCY	1 cut(s)	416
BisI	GCNGC	5 cut(s)	5, 330, 446, 449, 573
BlsI	GCNGC	5 cut(s)	6, 331, 447, 450, 574
Bme1390I	CCNGG	2 cut(s)	170, 235
Bme18I	GGWCC	1 cut(s)	655
BmgT120I	GGNCC	3 cut(s)	232, 372, 655
BmiI	GGNNCC	1 cut(s)	567
BmrFI	CCNGG	2 cut(s)	170, 235
BmsI	GCATC	1 cut(s)	345
BpiI	GAAGAC	1 cut(s)	540
BpmI	CTGGAG	1 cut(s)	492
BpuMI	CCSGG	2 cut(s)	170, 235
BsaAI	YACGTR	1 cut(s)	81
BsaHI	GRCGYC	3 cut(s)	109, 213, 222
Bsc4I	CCNNNNNNNGG	1 cut(s)	216
Bse1I	ACTGG	2 cut(s)	393, 640
Bse3DI	GCAATG	2 cut(s)	331, 443
BseGI	GGATG	1 cut(s)	43
BseLI	CCNNNNNNNGG	1 cut(s)	216
BseMI	GCAATG	2 cut(s)	331, 443
BseMII	CTCAG	1 cut(s)	392
BseNI	ACTGG	2 cut(s)	393, 640
BseRI	GAGGAG	2 cut(s)	440, 443
BseXI	GCAGC	3 cut(s)	316, 435, 457
BshFI	GGCC	4 cut(s)	85, 233, 373, 485
BshNI	GGYRCC	1 cut(s)	565
BsiHKAI	GWGCWC	1 cut(s)	670
BsiSI	CCGG	4 cut(s)	67, 170, 210, 235
BslFI	GGGAC	2 cut(s)	233, 332
BslI	CCNNNNNNNGG	1 cut(s)	216
BsmAI	GTCTC	1 cut(s)	264
BsmFI	GGGAC	2 cut(s)	233, 332
BsmI	GAATGC	1 cut(s)	505
BsnI	GGCC	4 cut(s)	85, 233, 373, 485
Bsp1286I	GDGCHC	1 cut(s)	670
Bsp143I	GATC	3 cut(s)	58, 103, 294
BspACI	CCGC	2 cut(s)	363, 572
BspANI	GGCC	4 cut(s)	85, 233, 373, 485
BspCNI	CTCAG	1 cut(s)	393
BspLI	GGNNCC	1 cut(s)	567
BspT107I	GGYRCC	1 cut(s)	565
BsrDI	GCAATG	2 cut(s)	331, 443
BsrI	ACTGG	2 cut(s)	393, 640
BssMI	GATC	3 cut(s)	58, 103, 294
BssNI	GRCGYC	3 cut(s)	109, 213, 222
Bst4CI	ACNGT	4 cut(s)	99, 150, 277, 540
BstACI	GRCGYC	3 cut(s)	109, 213, 222
BstBAI	YACGTR	1 cut(s)	81
BstC8I	GCNNGC	4 cut(s)	231, 301, 443, 570
BstDEI	CTNAG	1 cut(s)	401
BstF5I	GGATG	1 cut(s)	43
BstH2I	RGCGCY	1 cut(s)	416
BstHHI	GCGC	1 cut(s)	415
BstKTI	GATC	3 cut(s)	61, 106, 297
BstMAI	GTCTC	1 cut(s)	264
BstMBI	GATC	3 cut(s)	58, 103, 294
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 296, 442, 482
BstSCI	CCNGG	2 cut(s)	168, 233
BstV1I	GCAGC	3 cut(s)	316, 435, 457
BstV2I	GAAGAC	1 cut(s)	540
BstXI	CCANNNNNNTGG	1 cut(s)	81
BsuRI	GGCC	4 cut(s)	85, 233, 373, 485
BtsCI	GGATG	1 cut(s)	43
BtsIMutI	CAGTG	3 cut(s)	253, 273, 400
Cac8I	GCNNGC	4 cut(s)	231, 301, 443, 570
CaiI	CAGNNNCTG	1 cut(s)	448
CfoI	GCGC	1 cut(s)	415
Cfr13I	GGNCC	3 cut(s)	232, 372, 655
CseI	GACGC	1 cut(s)	202
CviAII	CATG	3 cut(s)	56, 265, 292
DdeI	CTNAG	1 cut(s)	401
DpnI	GATC	3 cut(s)	60, 105, 296
DpnII	GATC	3 cut(s)	58, 103, 294
EaeI	YGGCCR	2 cut(s)	83, 483
Ecl136II	GAGCTC	1 cut(s)	668
Eco24I	GRGCYC	1 cut(s)	670
Eco47I	GGWCC	1 cut(s)	655
Eco53kI	GAGCTC	1 cut(s)	668
Eco72I	CACGTG	1 cut(s)	81
EcoICRI	GAGCTC	1 cut(s)	668
EcoO109I	RGGNCCY	1 cut(s)	655
EcoT38I	GRGCYC	1 cut(s)	670
FaeI	CATG	3 cut(s)	59, 268, 295
FaiI	YATR	9 cut(s)	26, 57, 88, 266, 293, 312, 419, 519, 642
FaqI	GGGAC	2 cut(s)	233, 332
FatI	CATG	3 cut(s)	55, 264, 291
FbaI	TGATCA	1 cut(s)	58
FblI	GTMKAC	1 cut(s)	112
Fnu4HI	GCNGC	5 cut(s)	5, 330, 446, 449, 573
FokI	GGATG	1 cut(s)	30
FriOI	GRGCYC	1 cut(s)	670
Fsp4HI	GCNGC	5 cut(s)	5, 330, 446, 449, 573
FspBI	CTAG	1 cut(s)	680
GlaI	GCGC	1 cut(s)	414
GluI	GCNGC	5 cut(s)	5, 330, 446, 449, 573
GsuI	CTGGAG	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	416
HaeIII	GGCC	4 cut(s)	85, 233, 373, 485
HapII	CCGG	4 cut(s)	67, 170, 210, 235
HgaI	GACGC	1 cut(s)	202
HhaI	GCGC	1 cut(s)	415
Hin1I	GRCGYC	3 cut(s)	109, 213, 222
Hin1II	CATG	3 cut(s)	59, 268, 295
Hin6I	GCGC	1 cut(s)	413
HinP1I	GCGC	1 cut(s)	413
HpaII	CCGG	4 cut(s)	67, 170, 210, 235
HphI	GGTGA	2 cut(s)	382, 528
Hpy166II	GTNNAC	3 cut(s)	113, 384, 621
Hpy188III	TCNNGA	2 cut(s)	347, 471
Hpy8I	GTNNAC	3 cut(s)	113, 384, 621
Hpy99I	CGWCG	6 cut(s)	111, 182, 218, 556, 559, 628
HpyAV	CCTTC	2 cut(s)	397, 574
HpyCH4III	ACNGT	4 cut(s)	99, 150, 277, 540
HpyCH4IV	ACGT	3 cut(s)	80, 109, 222
HpyCH4V	TGCA	3 cut(s)	118, 451, 458
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 296, 442, 482
HpyF3I	CTNAG	1 cut(s)	401
HpySE526I	ACGT	3 cut(s)	80, 109, 222
Hsp92I	GRCGYC	3 cut(s)	109, 213, 222
Hsp92II	CATG	3 cut(s)	59, 268, 295
HspAI	GCGC	1 cut(s)	413
Ksp22I	TGATCA	1 cut(s)	58
Kzo9I	GATC	3 cut(s)	58, 103, 294
LmnI	GCTCC	2 cut(s)	473, 665
Lsp1109I	GCAGC	3 cut(s)	316, 435, 457
LweI	GCATC	1 cut(s)	345
MaeI	CTAG	1 cut(s)	680
MaeII	ACGT	3 cut(s)	80, 109, 222
MaeIII	GTNAC	1 cut(s)	223
MalI	GATC	3 cut(s)	60, 105, 296
MboI	GATC	3 cut(s)	58, 103, 294
MboII	GAAGA	4 cut(s)	115, 123, 525, 540
MfeI	CAATTG	1 cut(s)	459
MhlI	GDGCHC	1 cut(s)	670
MlsI	TGGCCA	2 cut(s)	85, 485
MluCI	AATT	2 cut(s)	159, 459
MluNI	TGGCCA	2 cut(s)	85, 485
MmeI	TCCRAC	1 cut(s)	35
MnlI	CCTC	9 cut(s)	18, 32, 102, 353, 418, 421, 570, 639, 646
Mox20I	TGGCCA	2 cut(s)	85, 485
MscI	TGGCCA	2 cut(s)	85, 485
MseI	TTAA	2 cut(s)	465, 522
MslI	CAYNNNNRTG	3 cut(s)	79, 395, 491
Msp20I	TGGCCA	2 cut(s)	85, 485
MspA1I	CMGCKG	1 cut(s)	448
MspI	CCGG	4 cut(s)	67, 170, 210, 235
MspR9I	CCNGG	2 cut(s)	170, 235
MunI	CAATTG	1 cut(s)	459
Mva1269I	GAATGC	1 cut(s)	505
MwoI	GCNNNNNNNGC	4 cut(s)	13, 296, 442, 482
NciI	CCSGG	2 cut(s)	170, 235
NdeII	GATC	3 cut(s)	58, 103, 294
NlaIII	CATG	3 cut(s)	59, 268, 295
NlaIV	GGNNCC	1 cut(s)	567
NmeAIII	GCCGAG	1 cut(s)	649
NmuCI	GTSAC	1 cut(s)	223
OliI	CACNNNNGTG	3 cut(s)	79, 395, 491
PcsI	WCGNNNNNNNCGW	1 cut(s)	623
PctI	GAATGC	1 cut(s)	505
PflFI	GACNNNGTC	2 cut(s)	176, 275
PkrI	GCNGC	5 cut(s)	6, 331, 447, 450, 574
PmaCI	CACGTG	1 cut(s)	81
PmlI	CACGTG	1 cut(s)	81
Ppu21I	YACGTR	1 cut(s)	81
PpuMI	RGGWCCY	1 cut(s)	655
Psp124BI	GAGCTC	1 cut(s)	670
Psp5II	RGGWCCY	1 cut(s)	655
PspCI	CACGTG	1 cut(s)	81
PspN4I	GGNNCC	1 cut(s)	567
PspPI	GGNCC	3 cut(s)	232, 372, 655
PspPPI	RGGWCCY	1 cut(s)	655
PstNI	CAGNNNCTG	1 cut(s)	448
PsyI	GACNNNGTC	2 cut(s)	176, 275
PvuII	CAGCTG	1 cut(s)	448
RseI	CAYNNNNRTG	3 cut(s)	79, 395, 491
SacI	GAGCTC	1 cut(s)	670
SaqAI	TTAA	2 cut(s)	465, 522
SatI	GCNGC	5 cut(s)	5, 330, 446, 449, 573
Sau3AI	GATC	3 cut(s)	58, 103, 294
Sau96I	GGNCC	3 cut(s)	232, 372, 655
ScrFI	CCNGG	2 cut(s)	170, 235
SduI	GDGCHC	1 cut(s)	670
SfaNI	GCATC	1 cut(s)	345
SinI	GGWCC	1 cut(s)	655
SmiMI	CAYNNNNRTG	3 cut(s)	79, 395, 491
Sse9I	AATT	2 cut(s)	159, 459
SsiI	CCGC	2 cut(s)	363, 572
SspMI	CTAG	1 cut(s)	680
SstI	GAGCTC	1 cut(s)	670
StyD4I	CCNGG	2 cut(s)	168, 233
TaaI	ACNGT	4 cut(s)	99, 150, 277, 540
TaiI	ACGT	3 cut(s)	83, 112, 225
TaqI	TCGA	4 cut(s)	106, 153, 346, 497
TasI	AATT	2 cut(s)	159, 459
TauI	GCSGC	1 cut(s)	575
Tru1I	TTAA	2 cut(s)	465, 522
Tru9I	TTAA	2 cut(s)	465, 522
TscAI	CASTG	3 cut(s)	253, 280, 400
TseFI	GTSAC	1 cut(s)	223
TseI	GCWGC	4 cut(s)	4, 329, 445, 448
Tsp45I	GTSAC	1 cut(s)	223
TspDTI	ATGAA	1 cut(s)	606
TspGWI	ACGGA	1 cut(s)	246
TspRI	CASTG	3 cut(s)	253, 280, 400
Tth111I	GACNNNGTC	2 cut(s)	176, 275
VpaK11BI	GGWCC	1 cut(s)	655
XapI	RAATTY	1 cut(s)	159
XcmI	CCANNNNNNNNNTGG	1 cut(s)	190
XmiI	GTMKAC	1 cut(s)	112
XspI	CTAG	1 cut(s)	680
ZraI	GACGTC	2 cut(s)	110, 223

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.