Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Forward (+)

49642733 .. 49644059

Gene Structure 1327 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G033660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 939 bp

ATGGTGGCGGCTAACCGTTACGCCGCCCAGCTGCAGCTATGCTGCCCCCAACGCCCCACCTCCTACTCTCTAGCCCGAACCATCCACGCCTACATGATCGCTTCCGGCTTCCACCCACGTGGCCATATCCTCAACCGTTTGATCGACGTCGACAGCAAATCTTCAAATCTTCGTTACGCACTCCACCTGTTCGACCAAATTCCCAACCCGGACATCGTCGCTAGAACAACTCTGGTTTCTGCGTATTTCGGCGTCGGGGACGTCACGCTGGCCCGGAGAGTGTTCAGTGAAACTCCGTCCAGCATGAGAGACACTGTCAGCTACAATGCCATGATCGCAGGCTACTCTCATAATAGGGAAGGCAATGCCGCCGTTGAGCTGTTTCGGGAAATGATGCGAGGCGGTTTTCGGCCTGATGAGTTTGCCTTCACCAGTGTGCTGAGTGGTCTGGCGCTTATAGTGGAGGAGGAAAAGCAATGTCAGCAACTTCATTGTGAAATTGTTAAGTCTGGATCATTGTTGGCCACTTCGGTGTCGAATGCGTTGGTGTCTGTGTATGTTAAGTGTGCTTCTTCGCCGTTGGTGTCGTCGTCGTCGGTGCATGGGAAGCAGCTGCATGCTTACATACTAAGATCTGAAGCGAAACTGACTGTGGACTTTTCTTTATCTGTGAATAATGCATTGGTTACACTATACTTTAGGTGCGGTAAAATTGATGAAGCACGATATATTTTTAATAATATGTCCGTCAGAGATCTTGTTTCTTGGAATGCAATATTGTCAGGGTTTAGCTCAAATGGATTTGGGGAAGAAGCTGTGAAGCTATTTAACCAAATGAGATTAGATGGTTTTAAACCCTGTGATTATGCATTTGCTGGAGCTATTACGTCATGGGCTGCTCTGGGGGCATTGGAGCATGGACGCCAGCTCCATGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

312

Amino Acids

34.37

Weight (kDa)

8.44

Isoelectric Point (pI)

30.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	103 - 151	6.2e-14	PPR repeat family
PPR	PF01535	106 - 136	2.3e-07	PPR repeat
PPR_2	PF13041	252 - 290	1.1e-07	PPR repeat family
PPR	PF01535	254 - 284	5.8e-08	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	150, 264
AccI	GTMKAC	1 cut(s)	150
AciI	CCGC	5 cut(s)	8, 24, 369, 402, 705
AclWI	GGATC	1 cut(s)	520
AcoI	YGGCCR	2 cut(s)	121, 522
AcsI	RAATTY	1 cut(s)	198
AcuI	CTGAAG	1 cut(s)	657
AcvI	CACGTG	1 cut(s)	119
AcyI	GRCGYC	4 cut(s)	147, 252, 261, 922
AgsI	TTSAA	1 cut(s)	165
AjuI	GAANNNNNNNTTGG	2 cut(s)	665, 697
AleI	CACNNNNGTG	3 cut(s)	117, 434, 530
Alw26I	GTCTC	1 cut(s)	303
AlwI	GGATC	1 cut(s)	520
AoxI	GGCC	4 cut(s)	121, 270, 410, 522
ApeKI	GCWGC	6 cut(s)	31, 34, 42, 610, 613, 896
ApoI	RAATTY	1 cut(s)	198
AspLEI	GCGC	1 cut(s)	454
AspS9I	GGNCC	1 cut(s)	271
AsuC2I	CCSGG	2 cut(s)	209, 274
AsuHPI	GGTGA	1 cut(s)	421
BalI	TGGCCA	2 cut(s)	123, 524
BbrPI	CACGTG	1 cut(s)	119
BbvI	GCAGC	6 cut(s)	18, 29, 46, 600, 622, 883
BccI	CCATC	2 cut(s)	89, 839
BceAI	ACGGC	2 cut(s)	356, 562
BcnI	CCSGG	2 cut(s)	209, 274
BcoDI	GTCTC	1 cut(s)	303
BfaI	CTAG	2 cut(s)	71, 222
BfmI	CTRYAG	1 cut(s)	32
BfoI	RGCGCY	1 cut(s)	455
BglII	AGATCT	2 cut(s)	632, 754
BisI	GCNGC	9 cut(s)	9, 24, 32, 35, 43, 369, 611, 614, 897
BlsI	GCNGC	9 cut(s)	10, 25, 33, 36, 44, 370, 612, 615, 898
Bme1390I	CCNGG	2 cut(s)	209, 274
BmgT120I	GGNCC	1 cut(s)	271
BmrFI	CCNGG	2 cut(s)	209, 274
BmsI	GCATC	1 cut(s)	384
BpmI	CTGGAG	1 cut(s)	897
BpuMI	CCSGG	2 cut(s)	209, 274
BsaAI	YACGTR	1 cut(s)	119
BsaHI	GRCGYC	4 cut(s)	147, 252, 261, 922
BsaXI	ACNNNNNCTCC	1 cut(s)	912
Bse1I	ACTGG	1 cut(s)	432
Bse3DI	GCAATG	2 cut(s)	370, 482
BseGI	GGATG	1 cut(s)	81
BseMI	GCAATG	2 cut(s)	370, 482
BseMII	CTCAG	1 cut(s)	431
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	1 cut(s)	479
BseXI	GCAGC	6 cut(s)	18, 29, 46, 600, 622, 883
BseYI	CCCAGC	1 cut(s)	27
BshFI	GGCC	4 cut(s)	123, 272, 412, 524
BsiSI	CCGG	3 cut(s)	105, 209, 274
BslFI	GGGAC	1 cut(s)	272
BsmAI	GTCTC	1 cut(s)	303
BsmFI	GGGAC	1 cut(s)	272
BsmI	GAATGC	2 cut(s)	544, 775
BsnI	GGCC	4 cut(s)	123, 272, 412, 524
Bsp143I	GATC	6 cut(s)	96, 141, 333, 512, 632, 754
BspACI	CCGC	5 cut(s)	8, 24, 369, 402, 705
BspANI	GGCC	4 cut(s)	123, 272, 412, 524
BspCNI	CTCAG	1 cut(s)	432
BspMAI	CTGCAG	1 cut(s)	36
BspPI	GGATC	1 cut(s)	520
BsrDI	GCAATG	2 cut(s)	370, 482
BsrI	ACTGG	1 cut(s)	432
BssMI	GATC	6 cut(s)	96, 141, 333, 512, 632, 754
BssNI	GRCGYC	4 cut(s)	147, 252, 261, 922
Bst4CI	ACNGT	4 cut(s)	17, 137, 316, 652
BstACI	GRCGYC	4 cut(s)	147, 252, 261, 922
BstBAI	YACGTR	1 cut(s)	119
BstC8I	GCNNGC	4 cut(s)	270, 340, 618, 926
BstDEI	CTNAG	2 cut(s)	440, 629
BstF5I	GGATG	1 cut(s)	81
BstH2I	RGCGCY	1 cut(s)	455
BstHHI	GCGC	1 cut(s)	454
BstKTI	GATC	6 cut(s)	99, 144, 336, 515, 635, 757
BstMAI	GTCTC	1 cut(s)	303
BstMBI	GATC	6 cut(s)	96, 141, 333, 512, 632, 754
BstMWI	GCNNNNNNNGC	5 cut(s)	51, 335, 481, 607, 905
BstNSI	RCATGY	1 cut(s)	620
BstSCI	CCNGG	2 cut(s)	207, 272
BstSFI	CTRYAG	1 cut(s)	32
BstV1I	GCAGC	6 cut(s)	18, 29, 46, 600, 622, 883
BstX2I	RGATCY	2 cut(s)	632, 754
BstXI	CCANNNNNNTGG	1 cut(s)	119
BstYI	RGATCY	2 cut(s)	632, 754
BsuRI	GGCC	4 cut(s)	123, 272, 412, 524
BtsCI	GGATG	1 cut(s)	81
BtsIMutI	CAGTG	3 cut(s)	292, 312, 439
Cac8I	GCNNGC	4 cut(s)	270, 340, 618, 926
CfoI	GCGC	1 cut(s)	454
Cfr13I	GGNCC	1 cut(s)	271
CseI	GACGC	2 cut(s)	241, 930
CviAII	CATG	8 cut(s)	94, 304, 331, 602, 617, 891, 917, 932
DdeI	CTNAG	2 cut(s)	440, 629
DpnI	GATC	6 cut(s)	98, 143, 335, 514, 634, 756
DpnII	GATC	6 cut(s)	96, 141, 333, 512, 632, 754
DraI	TTTAAA	1 cut(s)	853
EaeI	YGGCCR	2 cut(s)	121, 522
Eco57I	CTGAAG	1 cut(s)	657
Eco72I	CACGTG	1 cut(s)	119
EcoT22I	ATGCAT	2 cut(s)	682, 871
FaeI	CATG	8 cut(s)	97, 307, 334, 605, 620, 894, 920, 935
FaqI	GGGAC	1 cut(s)	272
FatI	CATG	8 cut(s)	93, 303, 330, 601, 616, 890, 916, 931
FblI	GTMKAC	1 cut(s)	150
Fnu4HI	GCNGC	9 cut(s)	9, 24, 32, 35, 43, 369, 611, 614, 897
FokI	GGATG	1 cut(s)	68
Fsp4HI	GCNGC	9 cut(s)	9, 24, 32, 35, 43, 369, 611, 614, 897
FspBI	CTAG	2 cut(s)	71, 222
GlaI	GCGC	1 cut(s)	453
GluI	GCNGC	9 cut(s)	9, 24, 32, 35, 43, 369, 611, 614, 897
GsaI	CCCAGC	1 cut(s)	31
GsuI	CTGGAG	1 cut(s)	897
HaeII	RGCGCY	1 cut(s)	455
HaeIII	GGCC	4 cut(s)	123, 272, 412, 524
HapII	CCGG	3 cut(s)	105, 209, 274
HgaI	GACGC	2 cut(s)	241, 930
HhaI	GCGC	1 cut(s)	454
Hin1I	GRCGYC	4 cut(s)	147, 252, 261, 922
Hin1II	CATG	8 cut(s)	97, 307, 334, 605, 620, 894, 920, 935
Hin6I	GCGC	1 cut(s)	452
HinP1I	GCGC	1 cut(s)	452
HincII	GTYRAC	1 cut(s)	151
HindII	GTYRAC	1 cut(s)	151
HpaII	CCGG	3 cut(s)	105, 209, 274
HphI	GGTGA	1 cut(s)	421
Hpy166II	GTNNAC	2 cut(s)	151, 655
Hpy188I	TCNGA	2 cut(s)	637, 752
Hpy188III	TCNNGA	2 cut(s)	386, 510
Hpy8I	GTNNAC	2 cut(s)	151, 655
Hpy99I	CGWCG	7 cut(s)	149, 152, 221, 257, 592, 595, 598
HpyAV	CCTTC	2 cut(s)	353, 436
HpyCH4III	ACNGT	4 cut(s)	17, 137, 316, 652
HpyCH4IV	ACGT	4 cut(s)	118, 147, 261, 887
HpyCH4V	TGCA	6 cut(s)	34, 601, 616, 680, 773, 869
HpyF10VI	GCNNNNNNNGC	5 cut(s)	51, 335, 481, 607, 905
HpyF3I	CTNAG	2 cut(s)	440, 629
HpySE526I	ACGT	4 cut(s)	118, 147, 261, 887
Hsp92I	GRCGYC	4 cut(s)	147, 252, 261, 922
Hsp92II	CATG	8 cut(s)	97, 307, 334, 605, 620, 894, 920, 935
HspAI	GCGC	1 cut(s)	452
Kzo9I	GATC	6 cut(s)	96, 141, 333, 512, 632, 754
LmnI	GCTCC	3 cut(s)	878, 913, 933
Lsp1109I	GCAGC	6 cut(s)	18, 29, 46, 600, 622, 883
LweI	GCATC	1 cut(s)	384
MaeI	CTAG	2 cut(s)	71, 222
MaeII	ACGT	4 cut(s)	118, 147, 261, 887
MaeIII	GTNAC	4 cut(s)	17, 173, 262, 685
MalI	GATC	6 cut(s)	98, 143, 335, 514, 634, 756
MboI	GATC	6 cut(s)	96, 141, 333, 512, 632, 754
MboII	GAAGA	4 cut(s)	153, 161, 564, 821
MflI	RGATCY	2 cut(s)	632, 754
MlsI	TGGCCA	2 cut(s)	123, 524
MluCI	AATT	3 cut(s)	198, 498, 711
MluNI	TGGCCA	2 cut(s)	123, 524
MnlI	CCTC	5 cut(s)	70, 140, 392, 457, 460
Mox20I	TGGCCA	2 cut(s)	123, 524
Mph1103I	ATGCAT	2 cut(s)	682, 871
MscI	TGGCCA	2 cut(s)	123, 524
MseI	TTAA	6 cut(s)	504, 561, 735, 828, 852, 937
MslI	CAYNNNNRTG	3 cut(s)	117, 434, 530
Msp20I	TGGCCA	2 cut(s)	123, 524
MspA1I	CMGCKG	2 cut(s)	31, 613
MspI	CCGG	3 cut(s)	105, 209, 274
MspR9I	CCNGG	2 cut(s)	209, 274
Mva1269I	GAATGC	2 cut(s)	544, 775
MwoI	GCNNNNNNNGC	5 cut(s)	51, 335, 481, 607, 905
NciI	CCSGG	2 cut(s)	209, 274
NdeII	GATC	6 cut(s)	96, 141, 333, 512, 632, 754
NlaIII	CATG	8 cut(s)	97, 307, 334, 605, 620, 894, 920, 935
NmuCI	GTSAC	1 cut(s)	262
NsiI	ATGCAT	2 cut(s)	682, 871
NspI	RCATGY	1 cut(s)	620
OliI	CACNNNNGTG	3 cut(s)	117, 434, 530
PaeI	GCATGC	1 cut(s)	620
PctI	GAATGC	2 cut(s)	544, 775
PflFI	GACNNNGTC	2 cut(s)	215, 314
PkrI	GCNGC	9 cut(s)	10, 25, 33, 36, 44, 370, 612, 615, 898
PmaCI	CACGTG	1 cut(s)	119
PmlI	CACGTG	1 cut(s)	119
Ppu21I	YACGTR	1 cut(s)	119
PspCI	CACGTG	1 cut(s)	119
PspFI	CCCAGC	1 cut(s)	27
PspPI	GGNCC	1 cut(s)	271
PstI	CTGCAG	1 cut(s)	36
PsuI	RGATCY	2 cut(s)	632, 754
PsyI	GACNNNGTC	2 cut(s)	215, 314
PvuII	CAGCTG	2 cut(s)	31, 613
RseI	CAYNNNNRTG	3 cut(s)	117, 434, 530
SalI	GTCGAC	1 cut(s)	149
SaqAI	TTAA	6 cut(s)	504, 561, 735, 828, 852, 937
SatI	GCNGC	9 cut(s)	9, 24, 32, 35, 43, 369, 611, 614, 897
Sau3AI	GATC	6 cut(s)	96, 141, 333, 512, 632, 754
Sau96I	GGNCC	1 cut(s)	271
ScrFI	CCNGG	2 cut(s)	209, 274
SfaNI	GCATC	1 cut(s)	384
SfcI	CTRYAG	1 cut(s)	32
SmiMI	CAYNNNNRTG	3 cut(s)	117, 434, 530
SphI	GCATGC	1 cut(s)	620
Sse9I	AATT	3 cut(s)	198, 498, 711
SsiI	CCGC	5 cut(s)	8, 24, 369, 402, 705
SspI	AATATT	1 cut(s)	777
SspMI	CTAG	2 cut(s)	71, 222
StyD4I	CCNGG	2 cut(s)	207, 272
TaaI	ACNGT	4 cut(s)	17, 137, 316, 652
TaiI	ACGT	4 cut(s)	121, 150, 264, 890
TaqI	TCGA	4 cut(s)	144, 150, 192, 536
TasI	AATT	3 cut(s)	198, 498, 711
TauI	GCSGC	3 cut(s)	11, 26, 371
Tru1I	TTAA	6 cut(s)	504, 561, 735, 828, 852, 937
Tru9I	TTAA	6 cut(s)	504, 561, 735, 828, 852, 937
TscAI	CASTG	3 cut(s)	292, 319, 439
TseFI	GTSAC	1 cut(s)	262
TseI	GCWGC	6 cut(s)	31, 34, 42, 610, 613, 896
Tsp45I	GTSAC	1 cut(s)	262
TspDTI	ATGAA	2 cut(s)	479, 732
TspGWI	ACGGA	2 cut(s)	285, 736
TspRI	CASTG	3 cut(s)	292, 319, 439
Tth111I	GACNNNGTC	2 cut(s)	215, 314
XapI	RAATTY	1 cut(s)	198
XceI	RCATGY	1 cut(s)	620
XmiI	GTMKAC	1 cut(s)	150
XspI	CTAG	2 cut(s)	71, 222
ZraI	GACGTC	2 cut(s)	148, 262
Zsp2I	ATGCAT	2 cut(s)	682, 871

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.