Rh7BG333100

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0004093
Physical Location & Seq
Forward (+)
34573452 .. 34575731
2280 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG333100.1

Sequence Viewer

Length: 2280 bp
ATGATCGCTTCCGGCTTCCACCCACGTGGCCATATCCTCAACCGTTTGATCGACGTCTACTGCAAATCTTCAAATCTTCACTACGCACTCCACCTGTTCGACCAAATTCCCAACCCGGACATCGTCGCCAGAACTACTCTGGTCTCGGCATATTCCGGCGTCGGGGACGTCACGCTGGCCCGGAGAGTCTTCAGTGAAACTCCGCTCAGCATGAGAGACACTGTTAGCTACAATGCCATGATCGCAGGCTACTCTCATAACAGGGACGGCAATGCCGCCGTTGAGCTGTTTCGTGACATGAGGCGAGGCGGTTTTCGCCCCGATGAGTTTACCTTCACCAGCGTGCTGAGTTCTCTGGCGCTTATAGTGGAGGAGGAGAAGCAATGCCAGCAGCTACATTGTGCAATTGTTAAGTCCGGAGCATTGCTGGCCACTTCGGTGTCGAATGCTTTGGTGTCTGTGTATGTTAAGTGTGCTTCTTCGCCGTTGGTGTCGTCGTCGTCGGTGGTGGCTGAAGCGAGGAAGGTGTTTGATGAAATGCCTAAGAGGGATGAGTTGTCGTGGACGACGATGATCACTGGTTATGTGAGGAATGAGGACCTTGATGGAGCTAGGCAGTTGCTTGATGGGATGGATGAAAAATTGGAAGTGGCATGGAATGCGATGATTTCGGGTTATGTGCATCATGGTTTTTGTCATGAGGCATTGAAGTTGTTTAGGGAAATGCATTTAATGGGGATTCGCCAGGATGAGTTTACGTACACGAGTGTTATCAGTGCTTGTGCTAACAATGGCTTATTTAAGCATGGGAAGCAGCTGCATGCTTACATACTAAGATCTGAAGCGAAACCGACTCTGGACTTTTCTTTATCTGTGAATAATGCATTGGTGACACTATACTTTAGGTGCGGTAAAATTGATGAAGCACGATATATTTTTAATAATATGTCTGTCAGAGATCTTGTTTCTTGGAATGCGATATTGTCAGGGTATGTGAGTGCAGGGCGCATTCAGGAAGCAAAGTCCTTTTTTGAGGAAATGCCGGAAAGGAGTGGTCTAACGTGGACTGTAATAATATCTGGTTTAGCTCAAAATGGATGTGGGGAAGAAGCTATGAAGCTATTTAACCAAATGAGATTAGATGGTTTTAAACCCTGTGATTATGCATTTGCTGGAGCTATTACGTCTTGTGCTGCTCTTGGGGCATTGGAGCACGGACGCCAGCTCCATGCTCAACTAATATGCTTGGGGCATGATTCAAGCCTTTCAGTCGGAAATTCACTTATTACGATGTATGCGAGATGTGGGGTTGTAGATGATGCTGACTTTGTGTTCCTTACAATGCCTTATATTGATTCCGTGTCGTGGAATGCTATGATTGCAGCTCTGGCACAACATGGATATGGTGTCCAAGCAATAAGACTTTTCGAACAAATGTTGGAGGAAGATATACTGCCAGATAGAATAACTTTCCTCACTATTCTCTCAGCTTGTAGTCATGCTGGTTTAGTTAAAGAAGGACGCCATTATTTTTGTTTAATGCATGACTCTTATGGTATTGCCCCTGGTGAAGATCATTATGCTCGTATGATTGATTTGTTGTGCCGATCTGGGGAGTTGACAGAGGCCAAGGACTTAATCAAATCAATGCCTTTTGAACCAGGTGCACCGATATGGGAGGCTATTCTAGCTGGTTGCCGGACTCATGGGAATATGGATTTAGGTATTCAAGCTGCAGAACGACTCTTTGAGCTGGTGCCCCAGCATGATGGAACCTATGTACTTTTGTCGAACTTGTATGCTGCTTTAGGCCGTTGGGATAATGTGGCTAAGGTGCGAACACTAATGAGGGAGCGAGGGGTGAAGAAAGAACCTGGTTGTAGTTGGATTGACGTTGAAAATATGGTCCATGTCTTCTTGGTTGGTGATACTGTGCACCCTGAGGTACATGAGGTGTACAAGTATCTAGAGCAACTTGTTCTTAAAATGAGGAAGTTAGGATATGTTCCTGACACAAAGTTTGCGTTGCATGATATGGAGTCTGAGCATAAAGAGAATTCCTTGTCTACTCACAGTGAGAAGCTTGCAGTTGCATTTGGGATTATGAAGCTTCCTCTTGGAGCCACAATCAGAGTTTTTAAGAATCTTAGGATTTGTGGGGATTGCCATAATGCATTTAAGTTTATGTCAAGAGTGGTTGGGAGAGAAATAGTCGTGAGAGACGCCAAGAGGTTTCATCATTTTAGGAAAGGCGAATGCTCTTGTGGAAATTACTGGTAG

Protein Analysis

759

Amino Acids

84.92

Weight (kDa)

6.34

Isoelectric Point (pI)

34.55

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 120 1.6e-14 PPR repeat family
PPR PF01535 75 - 105 5.7e-07 PPR repeat
PPR_2 PF13041 217 - 263 2.4e-12 PPR repeat family
PPR PF01535 217 - 247 3.6e-09 PPR repeat
PPR_2 PF13041 320 - 350 2e-06 PPR repeat family
PPR PF01535 322 - 350 4.1e-07 PPR repeat
PPR_2 PF13041 354 - 397 4.9e-07 PPR repeat family
PPR PF01535 354 - 383 8.3e-08 PPR repeat
PPR_2 PF13041 452 - 499 1.3e-10 PPR repeat family
PPR PF01535 454 - 484 3.2e-06 PPR repeat
E_motif PF20431 569 - 631 7e-22 E motif
DYW_deaminase PF14432 667 - 759 3.4e-42 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 57, 171
AccB1I GGYRCC 1 cut(s) 1756
AccBSI CCGCTC 1 cut(s) 205
AccI GTMKAC 2 cut(s) 57, 2066
AccIII TCCGGA 1 cut(s) 416
AciI CCGC 4 cut(s) 203, 276, 309, 909
AcoI YGGCCR 2 cut(s) 28, 429
AcsI RAATTY 3 cut(s) 105, 1276, 2056
AcuI CTGAAG 3 cut(s) 175, 534, 861
AcvI CACGTG 1 cut(s) 26
AcyI GRCGYC 6 cut(s) 54, 159, 168, 1219, 1522, 2223
AfaI GTAC 4 cut(s) 761, 1782, 1947, 1958
AfiI CCNNNNNNNGG 3 cut(s) 162, 1365, 1612
AgsI TTSAA 6 cut(s) 72, 709, 1260, 1658, 1730, 1898
AjnI CCWGG 4 cut(s) 744, 1564, 1660, 1873
AjuI GAANNNNNNNTTGG 2 cut(s) 869, 901
AleI CACNNNNGTG 3 cut(s) 24, 341, 437
Alw21I GWGCWC 3 cut(s) 1215, 1669, 1938
Alw26I GTCTC 3 cut(s) 148, 210, 2214
Alw44I GTGCAC 2 cut(s) 1665, 1934
Aor13HI TCCGGA 1 cut(s) 416
AoxI GGCC 5 cut(s) 28, 177, 429, 1626, 1810
ApaLI GTGCAC 2 cut(s) 1665, 1934
ApeKI GCWGC 7 cut(s) 391, 814, 817, 1193, 1382, 1733, 1802
ApoI RAATTY 3 cut(s) 105, 1276, 2056
ArsI GACNNNNNNTTYG 2 cut(s) 2003, 2035
AspLEI GCGC 2 cut(s) 361, 1008
AspS9I GGNCC 3 cut(s) 178, 598, 1906
AsuC2I CCSGG 2 cut(s) 116, 181
AsuHPI GGTGA 5 cut(s) 328, 901, 1580, 1873, 1937
AsuII TTCGAA 1 cut(s) 1428
AvaII GGWCC 2 cut(s) 598, 1906
AxyI CCTNAGG 1 cut(s) 1941
BaeGI GKGCMC 3 cut(s) 1669, 1761, 1938
BalI TGGCCA 2 cut(s) 30, 431
BanI GGYRCC 1 cut(s) 1756
BauI CACGAG 1 cut(s) 763
BbrPI CACGTG 1 cut(s) 26
BbsI GAAGAC 2 cut(s) 181, 1906
Bbv12I GWGCWC 3 cut(s) 1215, 1669, 1938
BbvI GCAGC 7 cut(s) 403, 804, 826, 1180, 1394, 1720, 1789
BccI CCATC 5 cut(s) 599, 620, 625, 1136, 1763
BceAI ACGGC 4 cut(s) 263, 283, 469, 1797
BciT130I CCWGG 4 cut(s) 746, 1566, 1662, 1875
BclI TGATCA 1 cut(s) 573
BcnI CCSGG 2 cut(s) 116, 181
BcoDI GTCTC 3 cut(s) 148, 210, 2214
BfaI CTAG 3 cut(s) 612, 1688, 1967
BfmI CTRYAG 1 cut(s) 1734
BfoI RGCGCY 1 cut(s) 362
BglII AGATCT 2 cut(s) 836, 958
BisI GCNGC 8 cut(s) 276, 392, 815, 818, 1194, 1383, 1734, 1803
BlpI GCTNAGC 1 cut(s) 206
BlsI GCNGC 8 cut(s) 277, 393, 816, 819, 1195, 1384, 1735, 1804
Bme1390I CCNGG 6 cut(s) 116, 181, 746, 1566, 1662, 1875
Bme18I GGWCC 2 cut(s) 598, 1906
BmgT120I GGNCC 3 cut(s) 178, 598, 1906
BmiI GGNNCC 3 cut(s) 1758, 1774, 2122
BmrFI CCNGG 6 cut(s) 116, 181, 746, 1566, 1662, 1875
BmsI GCATC 2 cut(s) 691, 1309
BpiI GAAGAC 2 cut(s) 181, 1906
BpmI CTGGAG 1 cut(s) 1194
Bpu10I CCTNAGC 1 cut(s) 1830
Bpu1102I GCTNAGC 1 cut(s) 206
Bpu14I TTCGAA 1 cut(s) 1428
BpuMI CCSGG 2 cut(s) 116, 181
BsaAI YACGTR 2 cut(s) 26, 759
BsaHI GRCGYC 6 cut(s) 54, 159, 168, 1219, 1522, 2223
BsaI GGTCTC 1 cut(s) 148
BsaJI CCNNGG 2 cut(s) 1564, 1629
BsaWI WCCGGW 1 cut(s) 416
BsaXI ACNNNNNCTCC 2 cut(s) 1209, 1239
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 1365, 1612
Bse1I ACTGG 2 cut(s) 583, 2279
Bse21I CCTNAGG 1 cut(s) 1941
Bse3DI GCAATG 3 cut(s) 277, 389, 422
BseAI TCCGGA 1 cut(s) 416
BseBI CCWGG 4 cut(s) 746, 1566, 1662, 1875
BseDI CCNNGG 2 cut(s) 1564, 1629
BseGI GGATG 5 cut(s) 556, 636, 640, 754, 1103
BseLI CCNNNNNNNGG 3 cut(s) 162, 1365, 1612
BseMI GCAATG 3 cut(s) 277, 389, 422
BseMII CTCAG 5 cut(s) 220, 338, 1500, 1932, 2034
BseNI ACTGG 2 cut(s) 583, 2279
BseRI GAGGAG 2 cut(s) 386, 389
BseSI GKGCMC 3 cut(s) 1669, 1761, 1938
BseXI GCAGC 7 cut(s) 403, 804, 826, 1180, 1394, 1720, 1789
BseYI CCCAGC 1 cut(s) 1761
BsgI GTGCAG 1 cut(s) 1020
BshFI GGCC 5 cut(s) 30, 179, 431, 1628, 1812
BshNI GGYRCC 1 cut(s) 1756
BsiHKAI GWGCWC 3 cut(s) 1215, 1669, 1938
BsiSI CCGG 7 cut(s) 12, 116, 156, 181, 417, 1043, 1699
BslFI GGGAC 2 cut(s) 179, 278
BslI CCNNNNNNNGG 3 cut(s) 162, 1365, 1612
BsmAI GTCTC 3 cut(s) 148, 210, 2214
BsmBI CGTCTC 1 cut(s) 2214
BsmFI GGGAC 2 cut(s) 179, 278
BsmI GAATGC 6 cut(s) 451, 664, 979, 1008, 1375, 2261
BsnI GGCC 5 cut(s) 30, 179, 431, 1628, 1812
Bso31I GGTCTC 1 cut(s) 148
Bsp119I TTCGAA 1 cut(s) 1428
Bsp1286I GDGCHC 4 cut(s) 1215, 1669, 1761, 1938
Bsp13I TCCGGA 1 cut(s) 416
Bsp1407I TGTACA 1 cut(s) 1956
Bsp143I GATC 8 cut(s) 3, 48, 240, 573, 836, 958, 1573, 1607
Bsp1720I GCTNAGC 1 cut(s) 206
BspACI CCGC 4 cut(s) 203, 276, 309, 909
BspANI GGCC 5 cut(s) 30, 179, 431, 1628, 1812
BspCNI CTCAG 5 cut(s) 219, 339, 1499, 1933, 2035
BspEI TCCGGA 1 cut(s) 416
BspHI TCATGA 1 cut(s) 697
BspLI GGNNCC 3 cut(s) 1758, 1774, 2122
BspMAI CTGCAG 1 cut(s) 1738
BspT104I TTCGAA 1 cut(s) 1428
BspT107I GGYRCC 1 cut(s) 1756
BspTNI GGTCTC 1 cut(s) 148
BsrBI CCGCTC 1 cut(s) 205
BsrDI GCAATG 3 cut(s) 277, 389, 422
BsrGI TGTACA 1 cut(s) 1956
BsrI ACTGG 2 cut(s) 583, 2279
BssECI CCNNGG 2 cut(s) 1564, 1629
BssMI GATC 8 cut(s) 3, 48, 240, 573, 836, 958, 1573, 1607
BssNI GRCGYC 6 cut(s) 54, 159, 168, 1219, 1522, 2223
BssSI CACGAG 1 cut(s) 763
BssT1I CCWWGG 1 cut(s) 1629
Bst2BI CACGAG 1 cut(s) 763
Bst2UI CCWGG 4 cut(s) 746, 1566, 1662, 1875
Bst4CI ACNGT 5 cut(s) 44, 223, 1069, 1933, 2075
BstACI GRCGYC 6 cut(s) 54, 159, 168, 1219, 1522, 2223
BstAPI GCANNNNNTGC 1 cut(s) 659
BstAUI TGTACA 1 cut(s) 1956
BstBAI YACGTR 2 cut(s) 26, 759
BstBI TTCGAA 1 cut(s) 1428
BstC8I GCNNGC 8 cut(s) 177, 247, 344, 389, 429, 822, 1223, 2085
BstDEI CTNAG 9 cut(s) 206, 347, 543, 833, 1486, 1830, 1941, 2043, 2147
BstF5I GGATG 5 cut(s) 556, 636, 640, 754, 1103
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 361, 1008
BstKTI GATC 8 cut(s) 6, 51, 243, 576, 839, 961, 1576, 1610
BstMAI GTCTC 3 cut(s) 148, 210, 2214
BstMBI GATC 8 cut(s) 3, 48, 240, 573, 836, 958, 1573, 1607
BstNI CCWGG 4 cut(s) 746, 1566, 1662, 1875
BstNSI RCATGY 1 cut(s) 824
BstSCI CCNGG 6 cut(s) 114, 179, 744, 1564, 1660, 1873
BstSFI CTRYAG 1 cut(s) 1734
BstSLI GKGCMC 3 cut(s) 1669, 1761, 1938
BstSNI TACGTA 1 cut(s) 759
BstV1I GCAGC 7 cut(s) 403, 804, 826, 1180, 1394, 1720, 1789
BstV2I GAAGAC 2 cut(s) 181, 1906
BstX2I RGATCY 2 cut(s) 836, 958
BstXI CCANNNNNNTGG 2 cut(s) 26, 1769
BstYI RGATCY 2 cut(s) 836, 958
Bsu36I CCTNAGG 1 cut(s) 1941
BsuRI GGCC 5 cut(s) 30, 179, 431, 1628, 1812
BtgZI GCGATG 1 cut(s) 677
BtsCI GGATG 5 cut(s) 556, 636, 640, 754, 1103
BtsIMutI CAGTG 5 cut(s) 199, 219, 576, 781, 2080
Cac8I GCNNGC 8 cut(s) 177, 247, 344, 389, 429, 822, 1223, 2085
CciI TCATGA 1 cut(s) 697
CfoI GCGC 2 cut(s) 361, 1008
Cfr13I GGNCC 3 cut(s) 178, 598, 1906
CseI GACGC 4 cut(s) 148, 1227, 1530, 2231
CsiI ACCWGGT 2 cut(s) 1660, 1873
Csp6I GTAC 4 cut(s) 760, 1781, 1946, 1957
CviQI GTAC 4 cut(s) 760, 1781, 1946, 1957
DdeI CTNAG 9 cut(s) 206, 347, 543, 833, 1486, 1830, 1941, 2043, 2147
DpnI GATC 8 cut(s) 5, 50, 242, 575, 838, 960, 1575, 1609
DpnII GATC 8 cut(s) 3, 48, 240, 573, 836, 958, 1573, 1607
DraI TTTAAA 1 cut(s) 1150
EaeI YGGCCR 2 cut(s) 28, 429
Eco105I TACGTA 1 cut(s) 759
Eco130I CCWWGG 1 cut(s) 1629
Eco31I GGTCTC 1 cut(s) 148
Eco47I GGWCC 2 cut(s) 598, 1906
Eco57I CTGAAG 3 cut(s) 175, 534, 861
Eco72I CACGTG 1 cut(s) 26
Eco81I CCTNAGG 1 cut(s) 1941
EcoO109I RGGNCCY 1 cut(s) 598
EcoRI GAATTC 1 cut(s) 2056
EcoRII CCWGG 4 cut(s) 744, 1564, 1660, 1873
EcoT14I CCWWGG 1 cut(s) 1629
EcoT22I ATGCAT 5 cut(s) 729, 886, 1168, 1545, 2176
ErhI CCWWGG 1 cut(s) 1629
Esp3I CGTCTC 1 cut(s) 2214
FaqI GGGAC 2 cut(s) 179, 278
FbaI TGATCA 1 cut(s) 573
FblI GTMKAC 2 cut(s) 57, 2066
Fnu4HI GCNGC 8 cut(s) 276, 392, 815, 818, 1194, 1383, 1734, 1803
FokI GGATG 5 cut(s) 563, 643, 647, 761, 1110
Fsp4HI GCNGC 8 cut(s) 276, 392, 815, 818, 1194, 1383, 1734, 1803
FspBI CTAG 3 cut(s) 612, 1688, 1967
GlaI GCGC 2 cut(s) 360, 1007
GluI GCNGC 8 cut(s) 276, 392, 815, 818, 1194, 1383, 1734, 1803
GsaI CCCAGC 1 cut(s) 1765
GsuI CTGGAG 1 cut(s) 1194
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 5 cut(s) 30, 179, 431, 1628, 1812
HapII CCGG 7 cut(s) 12, 116, 156, 181, 417, 1043, 1699
HgaI GACGC 4 cut(s) 148, 1227, 1530, 2231
HhaI GCGC 2 cut(s) 361, 1008
Hin1I GRCGYC 6 cut(s) 54, 159, 168, 1219, 1522, 2223
Hin6I GCGC 2 cut(s) 359, 1006
HinP1I GCGC 2 cut(s) 359, 1006
HincII GTYRAC 1 cut(s) 1620
HindII GTYRAC 1 cut(s) 1620
HindIII AAGCTT 2 cut(s) 2081, 2108
HpaII CCGG 7 cut(s) 12, 116, 156, 181, 417, 1043, 1699
HphI GGTGA 5 cut(s) 328, 901, 1580, 1873, 1937
Hpy188I TCNGA 5 cut(s) 841, 956, 1274, 2044, 2132
Hpy188III TCNNGA 9 cut(s) 293, 417, 698, 857, 1013, 1967, 2009, 2190, 2215
Hpy99I CGWCG 7 cut(s) 56, 128, 164, 499, 502, 505, 571
HpyAV CCTTC 3 cut(s) 343, 517, 1511
HpyCH4III ACNGT 5 cut(s) 44, 223, 1069, 1933, 2075
HpyCH4IV ACGT 7 cut(s) 25, 54, 168, 758, 1061, 1184, 1893
HpyF3I CTNAG 9 cut(s) 206, 347, 543, 833, 1486, 1830, 1941, 2043, 2147
HpySE526I ACGT 7 cut(s) 25, 54, 168, 758, 1061, 1184, 1893
Hsp92I GRCGYC 6 cut(s) 54, 159, 168, 1219, 1522, 2223
HspAI GCGC 2 cut(s) 359, 1006
Kpn2I TCCGGA 1 cut(s) 416
Ksp22I TGATCA 1 cut(s) 573
Kzo9I GATC 8 cut(s) 3, 48, 240, 573, 836, 958, 1573, 1607
LmnI GCTCC 7 cut(s) 419, 608, 1175, 1210, 1230, 1852, 2120
Lsp1109I GCAGC 7 cut(s) 403, 804, 826, 1180, 1394, 1720, 1789
LweI GCATC 2 cut(s) 691, 1309
MabI ACCWGGT 2 cut(s) 1660, 1873
MaeI CTAG 3 cut(s) 612, 1688, 1967
MaeII ACGT 7 cut(s) 25, 54, 168, 758, 1061, 1184, 1893
MaeIII GTNAC 3 cut(s) 169, 293, 889
MalI GATC 8 cut(s) 5, 50, 242, 575, 838, 960, 1575, 1609
MbiI CCGCTC 1 cut(s) 205
MboI GATC 8 cut(s) 3, 48, 240, 573, 836, 958, 1573, 1607
MboII GAAGA 9 cut(s) 60, 68, 181, 471, 1118, 1457, 1583, 1876, 1906
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 2 cut(s) 836, 958
MhlI GDGCHC 4 cut(s) 1215, 1669, 1761, 1938
MlsI TGGCCA 2 cut(s) 30, 431
MluCI AATT 7 cut(s) 105, 405, 641, 915, 1276, 2056, 2269
MluNI TGGCCA 2 cut(s) 30, 431
MlyI GAGTC 6 cut(s) 195, 847, 1541, 1696, 1737, 2048
MmeI TCCRAC 3 cut(s) 1252, 1419, 1865
Mox20I TGGCCA 2 cut(s) 30, 431
Mph1103I ATGCAT 5 cut(s) 729, 886, 1168, 1545, 2176
MroI TCCGGA 1 cut(s) 416
MscI TGGCCA 2 cut(s) 30, 431
MslI CAYNNNNRTG 5 cut(s) 24, 341, 437, 1401, 1672
Msp20I TGGCCA 2 cut(s) 30, 431
MspA1I CMGCKG 1 cut(s) 817
MspI CCGG 7 cut(s) 12, 116, 156, 181, 417, 1043, 1699
MspR9I CCNGG 6 cut(s) 116, 181, 746, 1566, 1662, 1875
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 6 cut(s) 451, 664, 979, 1008, 1375, 2261
MvaI CCWGG 4 cut(s) 746, 1566, 1662, 1875
NciI CCSGG 2 cut(s) 116, 181
NdeII GATC 8 cut(s) 3, 48, 240, 573, 836, 958, 1573, 1607
NlaIV GGNNCC 3 cut(s) 1758, 1774, 2122
NmeAIII GCCGAG 1 cut(s) 125
NmuCI GTSAC 3 cut(s) 169, 293, 889
NsiI ATGCAT 5 cut(s) 729, 886, 1168, 1545, 2176
NspI RCATGY 1 cut(s) 824
NspV TTCGAA 1 cut(s) 1428
OliI CACNNNNGTG 3 cut(s) 24, 341, 437
PaeI GCATGC 1 cut(s) 824
PagI TCATGA 1 cut(s) 697
PcsI WCGNNNNNNNCGW 2 cut(s) 566, 1295
PctI GAATGC 6 cut(s) 451, 664, 979, 1008, 1375, 2261
PfeI GAWTC 4 cut(s) 739, 1256, 1355, 2143
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 8 cut(s) 277, 393, 816, 819, 1195, 1384, 1735, 1804
PleI GAGTC 6 cut(s) 194, 847, 1541, 1696, 1737, 2047
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
PpsI GAGTC 6 cut(s) 194, 847, 1541, 1696, 1737, 2047
Ppu21I YACGTR 2 cut(s) 26, 759
PpuMI RGGWCCY 1 cut(s) 598
Psp5II RGGWCCY 1 cut(s) 598
Psp6I CCWGG 4 cut(s) 744, 1564, 1660, 1873
PspCI CACGTG 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 1761
PspGI CCWGG 4 cut(s) 744, 1564, 1660, 1873
PspN4I GGNNCC 3 cut(s) 1758, 1774, 2122
PspPI GGNCC 3 cut(s) 178, 598, 1906
PspPPI RGGWCCY 1 cut(s) 598
PstI CTGCAG 1 cut(s) 1738
PsuI RGATCY 2 cut(s) 836, 958
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 817
RsaI GTAC 4 cut(s) 761, 1782, 1947, 1958
RsaNI GTAC 4 cut(s) 760, 1781, 1946, 1957
RseI CAYNNNNRTG 5 cut(s) 24, 341, 437, 1401, 1672
SatI GCNGC 8 cut(s) 276, 392, 815, 818, 1194, 1383, 1734, 1803
Sau3AI GATC 8 cut(s) 3, 48, 240, 573, 836, 958, 1573, 1607
Sau96I GGNCC 3 cut(s) 178, 598, 1906
SchI GAGTC 6 cut(s) 195, 847, 1541, 1696, 1737, 2048
ScrFI CCNGG 6 cut(s) 116, 181, 746, 1566, 1662, 1875
SduI GDGCHC 4 cut(s) 1215, 1669, 1761, 1938
SexAI ACCWGGT 2 cut(s) 1660, 1873
SfaNI GCATC 2 cut(s) 691, 1309
SfcI CTRYAG 1 cut(s) 1734
SfuI TTCGAA 1 cut(s) 1428
SinI GGWCC 2 cut(s) 598, 1906
SmiMI CAYNNNNRTG 5 cut(s) 24, 341, 437, 1401, 1672
SnaBI TACGTA 1 cut(s) 759
SphI GCATGC 1 cut(s) 824
Sse9I AATT 7 cut(s) 105, 405, 641, 915, 1276, 2056, 2269
SsiI CCGC 4 cut(s) 203, 276, 309, 909
SspMI CTAG 3 cut(s) 612, 1688, 1967
StyD4I CCNGG 6 cut(s) 114, 179, 744, 1564, 1660, 1873
StyI CCWWGG 1 cut(s) 1629
TaaI ACNGT 5 cut(s) 44, 223, 1069, 1933, 2075
TaiI ACGT 7 cut(s) 28, 57, 171, 761, 1064, 1187, 1896
TaqI TCGA 5 cut(s) 51, 99, 443, 1428, 1790
TasI AATT 7 cut(s) 105, 405, 641, 915, 1276, 2056, 2269
TatI WGTACW 2 cut(s) 1780, 1956
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 4 cut(s) 739, 1256, 1355, 2143
TscAI CASTG 5 cut(s) 199, 226, 583, 781, 2080
TseFI GTSAC 3 cut(s) 169, 293, 889
TseI GCWGC 7 cut(s) 391, 814, 817, 1193, 1382, 1733, 1802
Tsp45I GTSAC 3 cut(s) 169, 293, 889
TspDTI ATGAA 6 cut(s) 549, 651, 936, 1130, 2120, 2225
TspGWI ACGGA 2 cut(s) 1230, 1348
TspRI CASTG 5 cut(s) 199, 226, 583, 781, 2080
Tth111I GACNNNGTC 1 cut(s) 122
VneI GTGCAC 2 cut(s) 1665, 1934
VpaK11BI GGWCC 2 cut(s) 598, 1906
XapI RAATTY 3 cut(s) 105, 1276, 2056
XbaI TCTAGA 1 cut(s) 1966
XceI RCATGY 1 cut(s) 824
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XmiI GTMKAC 2 cut(s) 57, 2066
XspI CTAG 3 cut(s) 612, 1688, 1967
ZraI GACGTC 2 cut(s) 55, 169
Zsp2I ATGCAT 5 cut(s) 729, 886, 1168, 1545, 2176
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.