Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Forward (+)

41680542 .. 41683586

Gene Structure 3045 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG385400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2286 bp

ATGATCGCTTCCGGCTTCCACCCACGTGGCCATATCCTCAACCGTTTGATCAACGTCTACTGCAAATCTTCAAATCTTCGTTACGCACTCCACCTGTTCGACCAAATTCCCAACCCGGACATCGTCGCCAGAACAACTCTGGTTTCGGCGTATTCCGGCGTCGGGGACGTCACGCTGGCCCGGAGAGTGTTCAGTGAAACTCCGTCCAGCATGAGTGACACTGTCAGCTACAATGCCATGATCGCAGGCTACTCTCATAACAGGGACGGCAATGCCGCCGTTGAGCTGTTTCGGGAAATGAGGCGAGGTGGTTTTCGGCCCGATGAGTTTACCTTCACCAGTGTGCTGAGTGGTCTGGCGCTTATAGTGGAGGAGGAGAAGCAATGCCAGCAGCTGCATTGCGCAATTGTTAAGTCTGGAGCGTTGTTGGCCACTTCGGTGTCGAATGCGTTGGTGTCTGTGTATGTTAAGTGTGCTTCTTCGCCGTTGGTGTTGTCATCGTCGTCGTCGGTGGTGGCTGCAGCGAGGAAGGTGTTTGATGAAATGCCTAAGAGAGATGAGCTGTCGTGGACGGCGATGATCACTGGCTATGTGAGGAATGAGGACCTTGATGGAGCTCGGCAGTTGCTCGATGGAATGGATGAAAAATTGGAAGTGGCGTGGAATGCGATGATTTCGGGTTATGTGCATCATGGTTTTTGTCATGAAGCATTGAAATTGTTTAGGGAAATGCATTTAATGGGGATTCGGCAGGATGAGTTTACGTACACGAGTGTTATCAGTGCTTGTGCTAACAATGGCTTATTTAAGCATGGGAAGCAGCTGCATGCTTACATACTAAGATCTGAAGCAAAACCGACTGTGGACTTTTCTTTATCTGTGAATAACGCATTGGTTACACTATACTTTAGGTGTGGTAAAATTGATGAAGCACGATATATTTTTAATAATACGTCCGTCAGAGATCTTGTTTCTTGGAATGTGATATTGTCAGGGTATGCCAATGCAGGGCGCATCCAGGAAGCAAAATCCCTTTTTGAGGAAATGCCGGAAAGGAGTGGTCTAACGTGGACTGTAATAATATCTGGTTTAGCTCAAAATGGATGTGGCGAAGAAGCTATGAAGCTATTTAACCAAATGAGATTAGATGGTTTTAAGCCCTGTGATTATGCATTTGCTGGAGCTATTACGTCTTGTGCTGCTCTTGGGGCATTGGAGCATGGACGCCAGCTCCATGCTCAAGTAATTTGCTTGGGGCATGATTCAAGCCTTTCAGTTGGAAATTCACTTATCACAATGTATGCGAGATGTGGGGTTGTAGATGATGCTGACTGTGTGTTCCTTACAATGCCTTATATTGATTCTGTGTCATGGAATGCTATGATCGCAGCTCTGGCACAACATGGATACGGTGTCCAAGCAATAAGACTTTTCGAACAAATGTTGGAGGAAGATATACTACCAGATAGAATAACTTTCCTCACTATTCTCTCAGCTTGTAGTCATGCTGGTTTAGTTAAAGAAGGGCGCCATTATTTTCGTTCAATGCATGACTCTTACGGTATTGGCCCCGGTGAAGATCATTATTCTCGTATGATTGATTTGTTGTGCCGATCTGGGGAGTTGACAGAGGCCAAGGACTTAATCAAATCAATGCCTTTTGAACCAGGTGCACCGATATGGGAGGCTATTCTTGCTGGTTGCCGGACTCATGGGAATATGGATTTAGGTATTCATGCTACAGAACGACTCTTTGAGCTGGTGCCCCAGCATGATGGAACCTATGTACTTTTGTCAAACTTGTATGCTGCTTTAGGCCGTTGGGATGATGTGGCTAAGGTACGAAAACTAATGAGGGAGCGAGGGGTTAAGAAAGAACCTGGTTGTAGTTGGATTGACGTTGAAAATATGGTCCATGTCTTCTTGGTTGGTGATACTGTGCACCCTGAGGTACATGAGGTGTACGAGTATCTAGAGCAACTTATTCTTAAAATGAGGAAGTTAGGATATGTTCCCGACACAAAGTTTGCGTTGCATGATATGGAATCTGAGCATAAAGAGAATTCCTTGTCTACTCACAGTGAGAAGCTTGCAGTCGCATTTGGGATCATGAAGCTTCCACTTGGAGCCACAATCAGAGTTTTTAAGAATCTTAGGATTTGTGGGGATTGCCATAATGCATTTAAGTTTATGTCAAGAGTGGTTGGGAGAGAAATAGTTGTGAGAGACGCCAAGAGGTTTCATCATTTTAGGAACGGCGAATGCTCTTGTGGAAATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

761

Amino Acids

84.93

Weight (kDa)

6.34

Isoelectric Point (pI)

35.12

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	73 - 120	2.3e-15	PPR repeat family
PPR	PF01535	75 - 105	1.4e-07	PPR repeat
PPR_2	PF13041	219 - 265	2.4e-12	PPR repeat family
PPR	PF01535	219 - 249	3.6e-09	PPR repeat
PPR_2	PF13041	322 - 352	7.3e-07	PPR repeat family
PPR	PF01535	324 - 352	1.5e-07	PPR repeat
PPR_2	PF13041	356 - 399	4.9e-07	PPR repeat family
PPR	PF01535	356 - 385	8.3e-08	PPR repeat
PPR_2	PF13041	454 - 501	1.3e-10	PPR repeat family
PPR	PF01535	456 - 486	3.2e-06	PPR repeat
E_motif	PF20431	571 - 633	6.3e-23	E motif
DYW_deaminase	PF14432	669 - 761	1.1e-42	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	171
Acc16I	TGCGCA	1 cut(s)	403
AccB1I	GGYRCC	2 cut(s)	1527, 1762
AccI	GTMKAC	2 cut(s)	57, 2072
AciI	CCGC	1 cut(s)	276
AclWI	GGATC	1 cut(s)	2114
AcoI	YGGCCR	2 cut(s)	28, 429
AcsI	RAATTY	3 cut(s)	105, 1282, 2062
AcuI	CTGAAG	1 cut(s)	867
AcvI	CACGTG	1 cut(s)	26
AcyI	GRCGYC	5 cut(s)	159, 168, 1225, 1528, 2229
AfaI	GTAC	5 cut(s)	767, 1788, 1842, 1953, 1964
AfiI	CCNNNNNNNGG	4 cut(s)	162, 1008, 1039, 1618
AgsI	TTSAA	6 cut(s)	72, 715, 1266, 1545, 1664, 1904
AjnI	CCWGG	3 cut(s)	1017, 1666, 1879
AjuI	GAANNNNNNNTTGG	2 cut(s)	875, 907
AleI	CACNNNNGTG	3 cut(s)	24, 341, 437
Alw21I	GWGCWC	3 cut(s)	619, 1675, 1944
Alw26I	GTCTC	1 cut(s)	2220
Alw44I	GTGCAC	2 cut(s)	1671, 1940
AlwI	GGATC	1 cut(s)	2114
AlwNI	CAGNNNCTG	1 cut(s)	394
AoxI	GGCC	7 cut(s)	28, 177, 317, 429, 1567, 1632, 1816
ApaLI	GTGCAC	2 cut(s)	1671, 1940
ApeKI	GCWGC	9 cut(s)	391, 394, 518, 521, 820, 823, 1199, 1388, 1808
ApoI	RAATTY	3 cut(s)	105, 1282, 2062
ArsI	GACNNNNNNTTYG	2 cut(s)	2009, 2041
AspLEI	GCGC	4 cut(s)	361, 404, 1014, 1530
AspS9I	GGNCC	5 cut(s)	178, 318, 604, 1568, 1912
AsuC2I	CCSGG	3 cut(s)	116, 181, 1572
AsuHPI	GGTGA	3 cut(s)	328, 1586, 1943
AsuII	TTCGAA	1 cut(s)	1434
AvaII	GGWCC	2 cut(s)	604, 1912
AxyI	CCTNAGG	1 cut(s)	1947
BaeGI	GKGCMC	3 cut(s)	1675, 1767, 1944
BalI	TGGCCA	2 cut(s)	30, 431
BanI	GGYRCC	2 cut(s)	1527, 1762
BanII	GRGCYC	1 cut(s)	619
BarI	GAAGNNNNNNTAC	2 cut(s)	1443, 1475
BauI	CACGAG	1 cut(s)	769
BbrPI	CACGTG	1 cut(s)	26
BbsI	GAAGAC	1 cut(s)	1912
Bbv12I	GWGCWC	3 cut(s)	619, 1675, 1944
BbvI	GCAGC	9 cut(s)	381, 403, 505, 533, 810, 832, 1186, 1400, 1795
BccI	CCATC	4 cut(s)	605, 626, 1142, 1769
BceAI	ACGGC	6 cut(s)	263, 283, 469, 588, 1803, 2272
BciT130I	CCWGG	3 cut(s)	1019, 1668, 1881
BciVI	GTATCC	1 cut(s)	1400
BclI	TGATCA	2 cut(s)	48, 579
BcnI	CCSGG	3 cut(s)	116, 181, 1572
BcoDI	GTCTC	1 cut(s)	2220
BfaI	CTAG	1 cut(s)	1973
BfmI	CTRYAG	2 cut(s)	519, 1740
BfoI	RGCGCY	2 cut(s)	362, 1531
BfuI	GTATCC	1 cut(s)	1400
BglII	AGATCT	2 cut(s)	842, 964
Bme1390I	CCNGG	6 cut(s)	116, 181, 1019, 1572, 1668, 1881
Bme18I	GGWCC	2 cut(s)	604, 1912
BmgT120I	GGNCC	5 cut(s)	178, 318, 604, 1568, 1912
BmiI	GGNNCC	5 cut(s)	1529, 1570, 1764, 1780, 2128
BmrFI	CCNGG	6 cut(s)	116, 181, 1019, 1572, 1668, 1881
BmsI	GCATC	3 cut(s)	697, 1023, 1315
BpiI	GAAGAC	1 cut(s)	1912
BpmI	CTGGAG	2 cut(s)	438, 1200
Bpu10I	CCTNAGC	1 cut(s)	1836
Bpu14I	TTCGAA	1 cut(s)	1434
BpuEI	CTTGAG	1 cut(s)	1224
BpuMI	CCSGG	3 cut(s)	116, 181, 1572
BsaAI	YACGTR	2 cut(s)	26, 765
BsaHI	GRCGYC	5 cut(s)	159, 168, 1225, 1528, 2229
BsaJI	CCNNGG	2 cut(s)	1570, 1635
BsaXI	ACNNNNNCTCC	2 cut(s)	1215, 1245
Bsc4I	CCNNNNNNNGG	4 cut(s)	162, 1008, 1039, 1618
Bse1I	ACTGG	3 cut(s)	339, 589, 2285
Bse21I	CCTNAGG	1 cut(s)	1947
Bse3DI	GCAATG	3 cut(s)	277, 389, 397
BseBI	CCWGG	3 cut(s)	1019, 1668, 1881
BseDI	CCNNGG	2 cut(s)	1570, 1635
BseGI	GGATG	5 cut(s)	646, 760, 1014, 1109, 1831
BseLI	CCNNNNNNNGG	4 cut(s)	162, 1008, 1039, 1618
BseMI	GCAATG	3 cut(s)	277, 389, 397
BseMII	CTCAG	4 cut(s)	338, 1506, 1938, 2040
BseNI	ACTGG	3 cut(s)	339, 589, 2285
BseRI	GAGGAG	2 cut(s)	386, 389
BseSI	GKGCMC	3 cut(s)	1675, 1767, 1944
BseXI	GCAGC	9 cut(s)	381, 403, 505, 533, 810, 832, 1186, 1400, 1795
BseYI	CCCAGC	1 cut(s)	1767
BshFI	GGCC	7 cut(s)	30, 179, 319, 431, 1569, 1634, 1818
BshNI	GGYRCC	2 cut(s)	1527, 1762
BsiHKAI	GWGCWC	3 cut(s)	619, 1675, 1944
BsiSI	CCGG	7 cut(s)	12, 116, 156, 181, 1049, 1572, 1705
BslFI	GGGAC	2 cut(s)	179, 278
BslI	CCNNNNNNNGG	4 cut(s)	162, 1008, 1039, 1618
BsmAI	GTCTC	1 cut(s)	2220
BsmBI	CGTCTC	1 cut(s)	2220
BsmFI	GGGAC	2 cut(s)	179, 278
BsmI	GAATGC	4 cut(s)	451, 670, 1381, 2267
BsnI	GGCC	7 cut(s)	30, 179, 319, 431, 1569, 1634, 1818
Bsp119I	TTCGAA	1 cut(s)	1434
Bsp1286I	GDGCHC	4 cut(s)	619, 1675, 1767, 1944
BspACI	CCGC	1 cut(s)	276
BspANI	GGCC	7 cut(s)	30, 179, 319, 431, 1569, 1634, 1818
BspCNI	CTCAG	4 cut(s)	339, 1505, 1939, 2041
BspHI	TCATGA	2 cut(s)	703, 2109
BspLI	GGNNCC	5 cut(s)	1529, 1570, 1764, 1780, 2128
BspMAI	CTGCAG	1 cut(s)	523
BspPI	GGATC	1 cut(s)	2114
BspT104I	TTCGAA	1 cut(s)	1434
BspT107I	GGYRCC	2 cut(s)	1527, 1762
BsrDI	GCAATG	3 cut(s)	277, 389, 397
BsrI	ACTGG	3 cut(s)	339, 589, 2285
BssECI	CCNNGG	2 cut(s)	1570, 1635
BssNI	GRCGYC	5 cut(s)	159, 168, 1225, 1528, 2229
BssSI	CACGAG	1 cut(s)	769
BssT1I	CCWWGG	1 cut(s)	1635
Bst2BI	CACGAG	1 cut(s)	769
Bst2UI	CCWGG	3 cut(s)	1019, 1668, 1881
Bst4CI	ACNGT	9 cut(s)	44, 223, 862, 1075, 1334, 1412, 1562, 1939, 2081
BstACI	GRCGYC	5 cut(s)	159, 168, 1225, 1528, 2229
BstBAI	YACGTR	2 cut(s)	26, 765
BstBI	TTCGAA	1 cut(s)	1434
BstC8I	GCNNGC	6 cut(s)	177, 247, 389, 828, 1229, 2091
BstDEI	CTNAG	8 cut(s)	347, 549, 839, 1492, 1836, 1947, 2049, 2153
BstENI	CCTNNNNNAGG	1 cut(s)	1037
BstF5I	GGATG	5 cut(s)	646, 760, 1014, 1109, 1831
BstH2I	RGCGCY	2 cut(s)	362, 1531
BstHHI	GCGC	4 cut(s)	361, 404, 1014, 1530
BstMAI	GTCTC	1 cut(s)	2220
BstMWI	GCNNNNNNNGC	9 cut(s)	242, 388, 428, 665, 817, 1208, 1385, 1394, 1694
BstNI	CCWGG	3 cut(s)	1019, 1668, 1881
BstNSI	RCATGY	1 cut(s)	830
BstSCI	CCNGG	6 cut(s)	114, 179, 1017, 1570, 1666, 1879
BstSFI	CTRYAG	2 cut(s)	519, 1740
BstSLI	GKGCMC	3 cut(s)	1675, 1767, 1944
BstSNI	TACGTA	1 cut(s)	765
BstV1I	GCAGC	9 cut(s)	381, 403, 505, 533, 810, 832, 1186, 1400, 1795
BstV2I	GAAGAC	1 cut(s)	1912
BstX2I	RGATCY	2 cut(s)	842, 964
BstXI	CCANNNNNNTGG	2 cut(s)	26, 1775
BstYI	RGATCY	2 cut(s)	842, 964
Bsu36I	CCTNAGG	1 cut(s)	1947
BsuI	GTATCC	1 cut(s)	1400
BsuRI	GGCC	7 cut(s)	30, 179, 319, 431, 1569, 1634, 1818
BtgZI	GCGATG	2 cut(s)	590, 683
BtsCI	GGATG	5 cut(s)	646, 760, 1014, 1109, 1831
BtsIMutI	CAGTG	6 cut(s)	199, 219, 346, 582, 787, 2086
Cac8I	GCNNGC	6 cut(s)	177, 247, 389, 828, 1229, 2091
CaiI	CAGNNNCTG	1 cut(s)	394
CciI	TCATGA	2 cut(s)	703, 2109
CfoI	GCGC	4 cut(s)	361, 404, 1014, 1530
Cfr13I	GGNCC	5 cut(s)	178, 318, 604, 1568, 1912
CseI	GACGC	3 cut(s)	148, 1233, 2237
CsiI	ACCWGGT	2 cut(s)	1666, 1879
Csp6I	GTAC	5 cut(s)	766, 1787, 1841, 1952, 1963
CviQI	GTAC	5 cut(s)	766, 1787, 1841, 1952, 1963
DdeI	CTNAG	8 cut(s)	347, 549, 839, 1492, 1836, 1947, 2049, 2153
DinI	GGCGCC	1 cut(s)	1529
EaeI	YGGCCR	2 cut(s)	28, 429
Ecl136II	GAGCTC	1 cut(s)	617
Eco105I	TACGTA	1 cut(s)	765
Eco130I	CCWWGG	1 cut(s)	1635
Eco24I	GRGCYC	1 cut(s)	619
Eco47I	GGWCC	2 cut(s)	604, 1912
Eco53kI	GAGCTC	1 cut(s)	617
Eco57I	CTGAAG	1 cut(s)	867
Eco72I	CACGTG	1 cut(s)	26
Eco81I	CCTNAGG	1 cut(s)	1947
EcoICRI	GAGCTC	1 cut(s)	617
EcoNI	CCTNNNNNAGG	1 cut(s)	1037
EcoO109I	RGGNCCY	1 cut(s)	604
EcoRI	GAATTC	1 cut(s)	2062
EcoRII	CCWGG	3 cut(s)	1017, 1666, 1879
EcoT14I	CCWWGG	1 cut(s)	1635
EcoT22I	ATGCAT	4 cut(s)	735, 1174, 1551, 2182
EcoT38I	GRGCYC	1 cut(s)	619
EgeI	GGCGCC	1 cut(s)	1529
EheI	GGCGCC	1 cut(s)	1529
ErhI	CCWWGG	1 cut(s)	1635
Esp3I	CGTCTC	1 cut(s)	2220
FaqI	GGGAC	2 cut(s)	179, 278
FbaI	TGATCA	2 cut(s)	48, 579
FblI	GTMKAC	2 cut(s)	57, 2072
FokI	GGATG	5 cut(s)	653, 767, 1001, 1116, 1838
FriOI	GRGCYC	1 cut(s)	619
FspBI	CTAG	1 cut(s)	1973
FspI	TGCGCA	1 cut(s)	403
GlaI	GCGC	4 cut(s)	360, 403, 1013, 1529
GsaI	CCCAGC	1 cut(s)	1771
GsuI	CTGGAG	2 cut(s)	438, 1200
HaeII	RGCGCY	2 cut(s)	362, 1531
HaeIII	GGCC	7 cut(s)	30, 179, 319, 431, 1569, 1634, 1818
HapII	CCGG	7 cut(s)	12, 116, 156, 181, 1049, 1572, 1705
HgaI	GACGC	3 cut(s)	148, 1233, 2237
HhaI	GCGC	4 cut(s)	361, 404, 1014, 1530
Hin1I	GRCGYC	5 cut(s)	159, 168, 1225, 1528, 2229
Hin6I	GCGC	4 cut(s)	359, 402, 1012, 1528
HinP1I	GCGC	4 cut(s)	359, 402, 1012, 1528
HincII	GTYRAC	1 cut(s)	1626
HindII	GTYRAC	1 cut(s)	1626
HindIII	AAGCTT	2 cut(s)	2087, 2114
HinfI	GANTC	8 cut(s)	745, 1262, 1361, 1553, 1708, 1749, 2045, 2149
HpaII	CCGG	7 cut(s)	12, 116, 156, 181, 1049, 1572, 1705
HphI	GGTGA	3 cut(s)	328, 1586, 1943
Hpy188I	TCNGA	4 cut(s)	847, 962, 2050, 2138
Hpy188III	TCNNGA	7 cut(s)	293, 417, 704, 1973, 2015, 2110, 2196
Hpy99I	CGWCG	5 cut(s)	128, 164, 505, 508, 511
HpyAV	CCTTC	3 cut(s)	343, 523, 1517
HpyCH4III	ACNGT	9 cut(s)	44, 223, 862, 1075, 1334, 1412, 1562, 1939, 2081
HpyCH4IV	ACGT	8 cut(s)	25, 54, 168, 764, 953, 1067, 1190, 1899
HpyF10VI	GCNNNNNNNGC	9 cut(s)	242, 388, 428, 665, 817, 1208, 1385, 1394, 1694
HpyF3I	CTNAG	8 cut(s)	347, 549, 839, 1492, 1836, 1947, 2049, 2153
HpySE526I	ACGT	8 cut(s)	25, 54, 168, 764, 953, 1067, 1190, 1899
Hsp92I	GRCGYC	5 cut(s)	159, 168, 1225, 1528, 2229
HspAI	GCGC	4 cut(s)	359, 402, 1012, 1528
KasI	GGCGCC	1 cut(s)	1527
Ksp22I	TGATCA	2 cut(s)	48, 579
LmnI	GCTCC	7 cut(s)	419, 614, 1181, 1216, 1236, 1858, 2126
Lsp1109I	GCAGC	9 cut(s)	381, 403, 505, 533, 810, 832, 1186, 1400, 1795
LweI	GCATC	3 cut(s)	697, 1023, 1315
MabI	ACCWGGT	2 cut(s)	1666, 1879
MaeI	CTAG	1 cut(s)	1973
MaeII	ACGT	8 cut(s)	25, 54, 168, 764, 953, 1067, 1190, 1899
MaeIII	GTNAC	4 cut(s)	80, 169, 215, 895
MboII	GAAGA	7 cut(s)	60, 68, 471, 1124, 1463, 1589, 1912
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	842, 964
MhlI	GDGCHC	4 cut(s)	619, 1675, 1767, 1944
MlsI	TGGCCA	2 cut(s)	30, 431
MluCI	AATT	9 cut(s)	105, 405, 647, 716, 921, 1245, 1282, 2062, 2275
MluNI	TGGCCA	2 cut(s)	30, 431
Mly113I	GGCGCC	1 cut(s)	1528
MlyI	GAGTC	3 cut(s)	1547, 1702, 1743
MmeI	TCCRAC	3 cut(s)	1258, 1425, 1871
Mox20I	TGGCCA	2 cut(s)	30, 431
Mph1103I	ATGCAT	4 cut(s)	735, 1174, 1551, 2182
MscI	TGGCCA	2 cut(s)	30, 431
MslI	CAYNNNNRTG	4 cut(s)	24, 341, 437, 1678
Msp20I	TGGCCA	2 cut(s)	30, 431
MspA1I	CMGCKG	2 cut(s)	394, 823
MspI	CCGG	7 cut(s)	12, 116, 156, 181, 1049, 1572, 1705
MspR9I	CCNGG	6 cut(s)	116, 181, 1019, 1572, 1668, 1881
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	4 cut(s)	451, 670, 1381, 2267
MvaI	CCWGG	3 cut(s)	1019, 1668, 1881
MwoI	GCNNNNNNNGC	9 cut(s)	242, 388, 428, 665, 817, 1208, 1385, 1394, 1694
NarI	GGCGCC	1 cut(s)	1528
NciI	CCSGG	3 cut(s)	116, 181, 1572
NlaIV	GGNNCC	5 cut(s)	1529, 1570, 1764, 1780, 2128
NmeAIII	GCCGAG	1 cut(s)	598
NmuCI	GTSAC	2 cut(s)	169, 215
NsbI	TGCGCA	1 cut(s)	403
NsiI	ATGCAT	4 cut(s)	735, 1174, 1551, 2182
NspI	RCATGY	1 cut(s)	830
NspV	TTCGAA	1 cut(s)	1434
OliI	CACNNNNGTG	3 cut(s)	24, 341, 437
PaeI	GCATGC	1 cut(s)	830
PagI	TCATGA	2 cut(s)	703, 2109
PcsI	WCGNNNNNNNCGW	1 cut(s)	572
PctI	GAATGC	4 cut(s)	451, 670, 1381, 2267
PfeI	GAWTC	5 cut(s)	745, 1262, 1361, 2045, 2149
PflFI	GACNNNGTC	2 cut(s)	122, 221
PfoI	TCCNGGA	1 cut(s)	1017
PleI	GAGTC	3 cut(s)	1547, 1702, 1743
PluTI	GGCGCC	1 cut(s)	1531
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
PpsI	GAGTC	3 cut(s)	1547, 1702, 1743
Ppu21I	YACGTR	2 cut(s)	26, 765
PpuMI	RGGWCCY	1 cut(s)	604
Psp124BI	GAGCTC	1 cut(s)	619
Psp5II	RGGWCCY	1 cut(s)	604
Psp6I	CCWGG	3 cut(s)	1017, 1666, 1879
PspCI	CACGTG	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	1767
PspGI	CCWGG	3 cut(s)	1017, 1666, 1879
PspN4I	GGNNCC	5 cut(s)	1529, 1570, 1764, 1780, 2128
PspPI	GGNCC	5 cut(s)	178, 318, 604, 1568, 1912
PspPPI	RGGWCCY	1 cut(s)	604
PstI	CTGCAG	1 cut(s)	523
PstNI	CAGNNNCTG	1 cut(s)	394
PsuI	RGATCY	2 cut(s)	842, 964
PsyI	GACNNNGTC	2 cut(s)	122, 221
PvuII	CAGCTG	2 cut(s)	394, 823
RsaI	GTAC	5 cut(s)	767, 1788, 1842, 1953, 1964
RsaNI	GTAC	5 cut(s)	766, 1787, 1841, 1952, 1963
RseI	CAYNNNNRTG	4 cut(s)	24, 341, 437, 1678
SacI	GAGCTC	1 cut(s)	619
Sau96I	GGNCC	5 cut(s)	178, 318, 604, 1568, 1912
SchI	GAGTC	3 cut(s)	1547, 1702, 1743
ScrFI	CCNGG	6 cut(s)	116, 181, 1019, 1572, 1668, 1881
SduI	GDGCHC	4 cut(s)	619, 1675, 1767, 1944
SexAI	ACCWGGT	2 cut(s)	1666, 1879
SfaNI	GCATC	3 cut(s)	697, 1023, 1315
SfcI	CTRYAG	2 cut(s)	519, 1740
SfoI	GGCGCC	1 cut(s)	1529
SfuI	TTCGAA	1 cut(s)	1434
SinI	GGWCC	2 cut(s)	604, 1912
SmiMI	CAYNNNNRTG	4 cut(s)	24, 341, 437, 1678
SmlI	CTYRAG	1 cut(s)	1239
SmoI	CTYRAG	1 cut(s)	1239
SnaBI	TACGTA	1 cut(s)	765
SphI	GCATGC	1 cut(s)	830
Sse9I	AATT	9 cut(s)	105, 405, 647, 716, 921, 1245, 1282, 2062, 2275
SsiI	CCGC	1 cut(s)	276
SspDI	GGCGCC	1 cut(s)	1527
SspMI	CTAG	1 cut(s)	1973
SstI	GAGCTC	1 cut(s)	619
StyD4I	CCNGG	6 cut(s)	114, 179, 1017, 1570, 1666, 1879
StyI	CCWWGG	1 cut(s)	1635
TaaI	ACNGT	9 cut(s)	44, 223, 862, 1075, 1334, 1412, 1562, 1939, 2081
TaiI	ACGT	8 cut(s)	28, 57, 171, 767, 956, 1070, 1193, 1902
TaqI	TCGA	4 cut(s)	99, 443, 630, 1434
TasI	AATT	9 cut(s)	105, 405, 647, 716, 921, 1245, 1282, 2062, 2275
TatI	WGTACW	1 cut(s)	1786
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	5 cut(s)	745, 1262, 1361, 2045, 2149
TscAI	CASTG	6 cut(s)	199, 226, 346, 589, 787, 2086
TseFI	GTSAC	2 cut(s)	169, 215
TseI	GCWGC	9 cut(s)	391, 394, 518, 521, 820, 823, 1199, 1388, 1808
Tsp45I	GTSAC	2 cut(s)	169, 215
TspDTI	ATGAA	8 cut(s)	555, 657, 720, 942, 1136, 1724, 2126, 2231
TspGWI	ACGGA	2 cut(s)	192, 946
TspRI	CASTG	6 cut(s)	199, 226, 346, 589, 787, 2086
Tth111I	GACNNNGTC	2 cut(s)	122, 221
VneI	GTGCAC	2 cut(s)	1671, 1940
VpaK11BI	GGWCC	2 cut(s)	604, 1912
XagI	CCTNNNNNAGG	1 cut(s)	1037
XapI	RAATTY	3 cut(s)	105, 1282, 2062
XbaI	TCTAGA	1 cut(s)	1972
XceI	RCATGY	1 cut(s)	830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	136
XmiI	GTMKAC	2 cut(s)	57, 2072
XspI	CTAG	1 cut(s)	1973
ZraI	GACGTC	1 cut(s)	169
Zsp2I	ATGCAT	4 cut(s)	735, 1174, 1551, 2182

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.