RLG00000001538

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0004093
Physical Location & Seq
Reverse (-)
17197589 .. 17199866
2278 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001538

Sequence Viewer

Length: 1896 bp
ATGATCACTTCCGGCTTCCACCCACGTGGCCATATCCTCAACCGTTTGATCGATGTCTATTGCGAATCTTCAAATCTTCGCTACGCACTCCACCTGTTCGACCAAAATCCCAACCCGGACATCGTCGCCAGAACAACTCTGGTTCCGGCGTATTCCGGCGTCGGGGACGTCACGCTGGCCCGGAGAGTGTTCAGTGAAACTCCGTCCAGCATGAGAGACACTGTCAGCTACAATGCCATGATCGCAGGTTACTCTCGTAATAGGGACGGCAATGCCGTCGTTGAGCTGTTTCGTGACATGAGGCGAGGTGGTTTTCTCCCCGATGAGTTTACGTTCACCAGTGTGCTGAGTGGTCTGGCGCTTATAGTGGAGGAGGAGAAGCAATGCCAGCAGCTGCATTGTGCAATTGTTAAGTCTGCAGCATTGTTGGCAACTTTGGTGTCGAATGCGTTGCTGTCTGTGTATGTTAAGTGTGCTTCTTCGCCGTTGGTGTTGTCGTCGTTGCTGGTGGTGGCTGTAGCGAGGAAGGTGTTTGATGAAATGCCTAAGAGAGATGAGCTGTCATGGACGACGATGATTACTGGCTATGTGAGGAATGAGGACCTTGATGGAGCTCGGCAGTTGCTTGATGGGATGGATGAAAAATTGGAAGTGGCGTGGAATGCGATGATTTCGGGTTATGTGCATCACGGTTTTTGTCATGAAGCATTGAAATTGTTTAGGGAAATGCATTTAATGGGGATTCGACAGGATGAGTTTACGTACACGAGTGTTATCAGTGCTTGTGCTAACAATGGCTTATTGAAGCATGGGAAGCAGCTGCATGCTTACATACTAAGATCTGAAGCAAAACCGACTGTGGACTTTTCTTTATCTGTGAATAATGCGTGTGGTAAAATTGACGAAGCACGATATATTTTTAATAATATGACGGTCAGAGATCATGTTTCTTGGAATGCAATATTGTCAGGGCATGAAATGCCGGAAAGGAGTGGTCTAACATGGACTGTAGTAATATCTGGTTTAGCTCAAAATGGATGTGGGGAAGAAGCTATGAAGTTATTTAACCAAATGAGATTAGATGCATTTAAACCCTGTGATTATGCATTTGCTGGAGCTATTACGTCTTGTGCTGCTCTGGGGGCATTGGAGCATGGACGCCAGCTCCATGCTCAACTAATATGCTTGGGGCATGATTCAAGCCTTTCAGTTGGAAATTCACTTATCACAATGTATGCGAGATGTGGGGTTGTAGACGATGCTGACTGTGTGTTCCTTACAATGCCTTATATTGATTCCGTGTCGTGGAATGCTATGATCGCAGCTCTGGCACAACATGGATATGGTGTCCAAGCAATTAGACTTTTCGAACAGATGTTGGGGGAAGATATAATGCCAGATAGAATAACTTTCCTCACTATTCTCTCAGCTTGTAGTCATGCTGGTTTAGTTAAAGAAGGACGCCAATATTTTCGTTTAATGCATGACTCTTATGGTTTTGCCCCTGGTGAAGACCATTATGCTCGTGCACCAATTTGGGAGGCTATTCTAGCTGGTTGCCGGACTCATGGGAATATGGATTTAGAGCAACTGGTTCTTAAAATGAGGAAGTTAGGATTTGTTCCTGACACAAAGTTTGCGTTGCATGATATGGAGTCTGAGCATAAAGAGAATTCCTTGTCTACTCACAGTGAGAAGCTTGCAGTTGCATTTGGGATCATGAAGCTTCCTCTTGGAGCCACAATCAGAGTTTTTAAGAATCTGAGGATCTGTGGGGATTGCCATAATGCATTTAAGTTCATGTCAAGAGTGGTTGGAAGAGAGATGGTTGTGAGAGACGCCAAGAGGTTTCATCATTTTAGGAACGGCGAATGCTCTTGTGGAAATTACTGGTAG

Protein Analysis

632

Amino Acids

70.34

Weight (kDa)

6.51

Isoelectric Point (pI)

34.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 120 2.1e-14 PPR repeat family
PPR PF01535 75 - 105 9.3e-07 PPR repeat
PPR_2 PF13041 218 - 264 1.9e-12 PPR repeat family
PPR PF01535 218 - 248 2.9e-09 PPR repeat
PPR_2 PF13041 334 - 377 5.7e-06 PPR repeat family
PPR PF01535 334 - 359 3.8e-07 PPR repeat
PPR_2 PF13041 432 - 479 4.6e-10 PPR repeat family
PPR PF01535 434 - 463 8.4e-06 PPR repeat
DYW_deaminase PF14432 539 - 631 1.3e-41 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
Acc36I ACCTGC 1 cut(s) 236
AccI GTMKAC 2 cut(s) 1254, 1682
AclWI GGATC 2 cut(s) 1724, 1775
AcoI YGGCCR 1 cut(s) 28
AcsI RAATTY 2 cut(s) 1216, 1672
AcuI CTGAAG 1 cut(s) 864
AcvI CACGTG 1 cut(s) 26
AcyI GRCGYC 5 cut(s) 159, 168, 1159, 1462, 1839
AfaI GTAC 1 cut(s) 764
AfiI CCNNNNNNNGG 2 cut(s) 162, 1305
AgsI TTSAA 4 cut(s) 72, 712, 805, 1200
AjnI CCWGG 1 cut(s) 1504
AleI CACNNNNGTG 2 cut(s) 24, 341
Alw21I GWGCWC 2 cut(s) 616, 1531
Alw26I GTCTC 2 cut(s) 210, 1830
Alw44I GTGCAC 1 cut(s) 1527
AlwI GGATC 2 cut(s) 1724, 1775
AlwNI CAGNNNCTG 1 cut(s) 394
AoxI GGCC 2 cut(s) 28, 177
ApaLI GTGCAC 1 cut(s) 1527
ApeKI GCWGC 7 cut(s) 391, 394, 419, 817, 820, 1133, 1322
ApoI RAATTY 2 cut(s) 1216, 1672
ArsI GACNNNNNNTTYG 2 cut(s) 1619, 1651
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 2 cut(s) 178, 601
AsuC2I CCSGG 2 cut(s) 116, 181
AsuHPI GGTGA 2 cut(s) 328, 1520
AsuII TTCGAA 1 cut(s) 1368
AvaII GGWCC 1 cut(s) 601
BaeGI GKGCMC 1 cut(s) 1531
BalI TGGCCA 1 cut(s) 30
BanII GRGCYC 1 cut(s) 616
BauI CACGAG 2 cut(s) 766, 1524
BbrPI CACGTG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 1518
Bbv12I GWGCWC 2 cut(s) 616, 1531
BbvI GCAGC 7 cut(s) 381, 403, 431, 807, 829, 1120, 1334
BccI CCATC 4 cut(s) 602, 623, 628, 1819
BceAI ACGGC 4 cut(s) 260, 283, 469, 1882
BcgI CGANNNNNNTGC 4 cut(s) 259, 293, 433, 467
BciT130I CCWGG 1 cut(s) 1506
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 2 cut(s) 116, 181
BcoDI GTCTC 2 cut(s) 210, 1830
BfaI CTAG 1 cut(s) 1550
BfmI CTRYAG 3 cut(s) 417, 516, 1008
BfoI RGCGCY 1 cut(s) 362
BfuAI ACCTGC 1 cut(s) 236
BglII AGATCT 1 cut(s) 839
BisI GCNGC 7 cut(s) 392, 395, 420, 818, 821, 1134, 1323
BlsI GCNGC 7 cut(s) 393, 396, 421, 819, 822, 1135, 1324
Bme1390I CCNGG 3 cut(s) 116, 181, 1506
Bme18I GGWCC 1 cut(s) 601
BmgT120I GGNCC 2 cut(s) 178, 601
BmiI GGNNCC 2 cut(s) 144, 1738
BmrFI CCNGG 3 cut(s) 116, 181, 1506
BmsI GCATC 3 cut(s) 694, 1072, 1249
BpiI GAAGAC 1 cut(s) 1518
BpmI CTGGAG 1 cut(s) 1134
Bpu14I TTCGAA 1 cut(s) 1368
BpuMI CCSGG 2 cut(s) 116, 181
Bsa29I ATCGAT 1 cut(s) 51
BsaAI YACGTR 2 cut(s) 26, 762
BsaHI GRCGYC 5 cut(s) 159, 168, 1159, 1462, 1839
BsaJI CCNNGG 1 cut(s) 1504
BsaXI ACNNNNNCTCC 2 cut(s) 1149, 1179
Bsc4I CCNNNNNNNGG 2 cut(s) 162, 1305
Bse1I ACTGG 4 cut(s) 339, 586, 1596, 1895
Bse3DI GCAATG 2 cut(s) 277, 389
BseBI CCWGG 1 cut(s) 1506
BseCI ATCGAT 1 cut(s) 51
BseDI CCNNGG 1 cut(s) 1504
BseGI GGATG 4 cut(s) 639, 643, 757, 1043
BseLI CCNNNNNNNGG 2 cut(s) 162, 1305
BseMI GCAATG 2 cut(s) 277, 389
BseMII CTCAG 4 cut(s) 338, 1440, 1650, 1754
BseNI ACTGG 4 cut(s) 339, 586, 1596, 1895
BseRI GAGGAG 2 cut(s) 386, 389
BseSI GKGCMC 1 cut(s) 1531
BseXI GCAGC 7 cut(s) 381, 403, 431, 807, 829, 1120, 1334
BshFI GGCC 2 cut(s) 30, 179
BshVI ATCGAT 1 cut(s) 51
BsiHKAI GWGCWC 2 cut(s) 616, 1531
BsiSI CCGG 7 cut(s) 12, 116, 146, 156, 181, 983, 1561
BslFI GGGAC 2 cut(s) 179, 278
BslI CCNNNNNNNGG 2 cut(s) 162, 1305
BsmAI GTCTC 2 cut(s) 210, 1830
BsmBI CGTCTC 1 cut(s) 1830
BsmFI GGGAC 2 cut(s) 179, 278
BsmI GAATGC 5 cut(s) 451, 667, 961, 1315, 1877
BsnI GGCC 2 cut(s) 30, 179
Bsp119I TTCGAA 1 cut(s) 1368
Bsp1286I GDGCHC 2 cut(s) 616, 1531
Bsp143I GATC 8 cut(s) 3, 48, 240, 839, 940, 1317, 1716, 1767
BspANI GGCC 2 cut(s) 30, 179
BspCNI CTCAG 4 cut(s) 339, 1439, 1651, 1755
BspDI ATCGAT 1 cut(s) 51
BspHI TCATGA 2 cut(s) 700, 1719
BspLI GGNNCC 2 cut(s) 144, 1738
BspMAI CTGCAG 1 cut(s) 421
BspMI ACCTGC 1 cut(s) 236
BspPI GGATC 2 cut(s) 1724, 1775
BspT104I TTCGAA 1 cut(s) 1368
BsrDI GCAATG 2 cut(s) 277, 389
BsrI ACTGG 4 cut(s) 339, 586, 1596, 1895
BssECI CCNNGG 1 cut(s) 1504
BssMI GATC 8 cut(s) 3, 48, 240, 839, 940, 1317, 1716, 1767
BssNI GRCGYC 5 cut(s) 159, 168, 1159, 1462, 1839
BssSI CACGAG 2 cut(s) 766, 1524
Bst2BI CACGAG 2 cut(s) 766, 1524
Bst2UI CCWGG 1 cut(s) 1506
Bst4CI ACNGT 8 cut(s) 44, 223, 692, 859, 934, 1009, 1268, 1691
Bst6I CTCTTC 1 cut(s) 1813
BstACI GRCGYC 5 cut(s) 159, 168, 1159, 1462, 1839
BstAPI GCANNNNNTGC 1 cut(s) 979
BstBAI YACGTR 2 cut(s) 26, 762
BstBI TTCGAA 1 cut(s) 1368
BstC8I GCNNGC 5 cut(s) 177, 389, 825, 1163, 1701
BstDEI CTNAG 6 cut(s) 347, 546, 836, 1426, 1659, 1763
BstF5I GGATG 4 cut(s) 639, 643, 757, 1043
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 1 cut(s) 361
BstKTI GATC 8 cut(s) 6, 51, 243, 842, 943, 1320, 1719, 1770
BstMAI GTCTC 2 cut(s) 210, 1830
BstMBI GATC 8 cut(s) 3, 48, 240, 839, 940, 1317, 1716, 1767
BstNI CCWGG 1 cut(s) 1506
BstNSI RCATGY 1 cut(s) 827
BstSCI CCNGG 3 cut(s) 114, 179, 1504
BstSFI CTRYAG 3 cut(s) 417, 516, 1008
BstSLI GKGCMC 1 cut(s) 1531
BstSNI TACGTA 1 cut(s) 762
BstV1I GCAGC 7 cut(s) 381, 403, 431, 807, 829, 1120, 1334
BstV2I GAAGAC 1 cut(s) 1518
BstX2I RGATCY 2 cut(s) 839, 1767
BstXI CCANNNNNNTGG 1 cut(s) 26
BstYI RGATCY 2 cut(s) 839, 1767
Bsu15I ATCGAT 1 cut(s) 51
BsuRI GGCC 2 cut(s) 30, 179
BsuTUI ATCGAT 1 cut(s) 51
BtgZI GCGATG 1 cut(s) 680
BtsCI GGATG 4 cut(s) 639, 643, 757, 1043
BtsIMutI CAGTG 5 cut(s) 199, 219, 346, 784, 1696
BveI ACCTGC 1 cut(s) 236
Cac8I GCNNGC 5 cut(s) 177, 389, 825, 1163, 1701
CaiI CAGNNNCTG 1 cut(s) 394
CciI TCATGA 2 cut(s) 700, 1719
CfoI GCGC 1 cut(s) 361
Cfr13I GGNCC 2 cut(s) 178, 601
ClaI ATCGAT 1 cut(s) 51
CseI GACGC 4 cut(s) 148, 1167, 1470, 1847
Csp6I GTAC 1 cut(s) 763
CviQI GTAC 1 cut(s) 763
DdeI CTNAG 6 cut(s) 347, 546, 836, 1426, 1659, 1763
DpnI GATC 8 cut(s) 5, 50, 242, 841, 942, 1319, 1718, 1769
DpnII GATC 8 cut(s) 3, 48, 240, 839, 940, 1317, 1716, 1767
DraI TTTAAA 1 cut(s) 1090
EaeI YGGCCR 1 cut(s) 28
Eam1104I CTCTTC 1 cut(s) 1813
EarI CTCTTC 1 cut(s) 1813
Ecl136II GAGCTC 1 cut(s) 614
Eco105I TACGTA 1 cut(s) 762
Eco24I GRGCYC 1 cut(s) 616
Eco47I GGWCC 1 cut(s) 601
Eco53kI GAGCTC 1 cut(s) 614
Eco57I CTGAAG 1 cut(s) 864
Eco72I CACGTG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 614
EcoO109I RGGNCCY 1 cut(s) 601
EcoRI GAATTC 1 cut(s) 1672
EcoRII CCWGG 1 cut(s) 1504
EcoT22I ATGCAT 5 cut(s) 732, 1087, 1108, 1485, 1792
EcoT38I GRGCYC 1 cut(s) 616
Esp3I CGTCTC 1 cut(s) 1830
FaqI GGGAC 2 cut(s) 179, 278
FbaI TGATCA 1 cut(s) 3
FblI GTMKAC 2 cut(s) 1254, 1682
Fnu4HI GCNGC 7 cut(s) 392, 395, 420, 818, 821, 1134, 1323
FokI GGATG 4 cut(s) 646, 650, 764, 1050
FriOI GRGCYC 1 cut(s) 616
Fsp4HI GCNGC 7 cut(s) 392, 395, 420, 818, 821, 1134, 1323
FspBI CTAG 1 cut(s) 1550
GlaI GCGC 1 cut(s) 360
GluI GCNGC 7 cut(s) 392, 395, 420, 818, 821, 1134, 1323
GsuI CTGGAG 1 cut(s) 1134
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 2 cut(s) 30, 179
HapII CCGG 7 cut(s) 12, 116, 146, 156, 181, 983, 1561
HgaI GACGC 4 cut(s) 148, 1167, 1470, 1847
HhaI GCGC 1 cut(s) 361
Hin1I GRCGYC 5 cut(s) 159, 168, 1159, 1462, 1839
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HindIII AAGCTT 2 cut(s) 1697, 1724
HinfI GANTC 8 cut(s) 65, 742, 1196, 1295, 1487, 1564, 1655, 1759
HpaII CCGG 7 cut(s) 12, 116, 146, 156, 181, 983, 1561
HphI GGTGA 2 cut(s) 328, 1520
Hpy166II GTNNAC 8 cut(s) 330, 336, 759, 765, 862, 1255, 1529, 1683
Hpy188I TCNGA 5 cut(s) 844, 938, 1660, 1748, 1764
Hpy188III TCNNGA 5 cut(s) 293, 701, 1625, 1720, 1806
Hpy8I GTNNAC 8 cut(s) 330, 336, 759, 765, 862, 1255, 1529, 1683
Hpy99I CGWCG 5 cut(s) 128, 164, 281, 502, 574
HpyAV CCTTC 2 cut(s) 520, 1451
HpyCH4III ACNGT 8 cut(s) 44, 223, 692, 859, 934, 1009, 1268, 1691
HpyCH4IV ACGT 5 cut(s) 25, 168, 332, 761, 1124
HpyF3I CTNAG 6 cut(s) 347, 546, 836, 1426, 1659, 1763
HpySE526I ACGT 5 cut(s) 25, 168, 332, 761, 1124
Hsp92I GRCGYC 5 cut(s) 159, 168, 1159, 1462, 1839
HspAI GCGC 1 cut(s) 359
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 8 cut(s) 3, 48, 240, 839, 940, 1317, 1716, 1767
LmnI GCTCC 5 cut(s) 611, 1115, 1150, 1170, 1736
Lsp1109I GCAGC 7 cut(s) 381, 403, 431, 807, 829, 1120, 1334
LweI GCATC 3 cut(s) 694, 1072, 1249
MaeI CTAG 1 cut(s) 1550
MaeII ACGT 5 cut(s) 25, 168, 332, 761, 1124
MaeIII GTNAC 3 cut(s) 169, 248, 293
MalI GATC 8 cut(s) 5, 50, 242, 841, 942, 1319, 1718, 1769
MboI GATC 8 cut(s) 3, 48, 240, 839, 940, 1317, 1716, 1767
MboII GAAGA 7 cut(s) 60, 68, 471, 1058, 1397, 1523, 1830
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 2 cut(s) 839, 1767
MhlI GDGCHC 2 cut(s) 616, 1531
MlsI TGGCCA 1 cut(s) 30
MluCI AATT 9 cut(s) 405, 644, 713, 897, 1216, 1356, 1533, 1672, 1885
MluNI TGGCCA 1 cut(s) 30
MlyI GAGTC 3 cut(s) 1481, 1558, 1664
MmeI TCCRAC 2 cut(s) 1192, 1795
Mox20I TGGCCA 1 cut(s) 30
Mph1103I ATGCAT 5 cut(s) 732, 1087, 1108, 1485, 1792
MscI TGGCCA 1 cut(s) 30
MslI CAYNNNNRTG 3 cut(s) 24, 341, 1341
Msp20I TGGCCA 1 cut(s) 30
MspA1I CMGCKG 2 cut(s) 394, 820
MspI CCGG 7 cut(s) 12, 116, 146, 156, 181, 983, 1561
MspR9I CCNGG 3 cut(s) 116, 181, 1506
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 5 cut(s) 451, 667, 961, 1315, 1877
MvaI CCWGG 1 cut(s) 1506
NciI CCSGG 2 cut(s) 116, 181
NdeII GATC 8 cut(s) 3, 48, 240, 839, 940, 1317, 1716, 1767
NlaIV GGNNCC 2 cut(s) 144, 1738
NmeAIII GCCGAG 1 cut(s) 595
NmuCI GTSAC 2 cut(s) 169, 293
NsiI ATGCAT 5 cut(s) 732, 1087, 1108, 1485, 1792
NspI RCATGY 1 cut(s) 827
NspV TTCGAA 1 cut(s) 1368
OliI CACNNNNGTG 2 cut(s) 24, 341
PaeI GCATGC 1 cut(s) 827
PagI TCATGA 2 cut(s) 700, 1719
PcsI WCGNNNNNNNCGW 1 cut(s) 273
PctI GAATGC 5 cut(s) 451, 667, 961, 1315, 1877
PfeI GAWTC 5 cut(s) 65, 742, 1196, 1295, 1759
PflFI GACNNNGTC 2 cut(s) 122, 221
PkrI GCNGC 7 cut(s) 393, 396, 421, 819, 822, 1135, 1324
PleI GAGTC 3 cut(s) 1481, 1558, 1663
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
PpsI GAGTC 3 cut(s) 1481, 1558, 1663
Ppu21I YACGTR 2 cut(s) 26, 762
PpuMI RGGWCCY 1 cut(s) 601
Psp124BI GAGCTC 1 cut(s) 616
Psp5II RGGWCCY 1 cut(s) 601
Psp6I CCWGG 1 cut(s) 1504
PspCI CACGTG 1 cut(s) 26
PspGI CCWGG 1 cut(s) 1504
PspN4I GGNNCC 2 cut(s) 144, 1738
PspPI GGNCC 2 cut(s) 178, 601
PspPPI RGGWCCY 1 cut(s) 601
PstI CTGCAG 1 cut(s) 421
PstNI CAGNNNCTG 1 cut(s) 394
PsuI RGATCY 2 cut(s) 839, 1767
PsyI GACNNNGTC 2 cut(s) 122, 221
PvuII CAGCTG 2 cut(s) 394, 820
RsaI GTAC 1 cut(s) 764
RsaNI GTAC 1 cut(s) 763
RseI CAYNNNNRTG 3 cut(s) 24, 341, 1341
SacI GAGCTC 1 cut(s) 616
SatI GCNGC 7 cut(s) 392, 395, 420, 818, 821, 1134, 1323
Sau3AI GATC 8 cut(s) 3, 48, 240, 839, 940, 1317, 1716, 1767
Sau96I GGNCC 2 cut(s) 178, 601
SchI GAGTC 3 cut(s) 1481, 1558, 1664
ScrFI CCNGG 3 cut(s) 116, 181, 1506
SduI GDGCHC 2 cut(s) 616, 1531
SfaNI GCATC 3 cut(s) 694, 1072, 1249
SfcI CTRYAG 3 cut(s) 417, 516, 1008
SfuI TTCGAA 1 cut(s) 1368
SinI GGWCC 1 cut(s) 601
SmiMI CAYNNNNRTG 3 cut(s) 24, 341, 1341
SnaBI TACGTA 1 cut(s) 762
SphI GCATGC 1 cut(s) 827
Sse9I AATT 9 cut(s) 405, 644, 713, 897, 1216, 1356, 1533, 1672, 1885
SspI AATATT 2 cut(s) 963, 1469
SspMI CTAG 1 cut(s) 1550
SstI GAGCTC 1 cut(s) 616
StyD4I CCNGG 3 cut(s) 114, 179, 1504
TaaI ACNGT 8 cut(s) 44, 223, 692, 859, 934, 1009, 1268, 1691
TaiI ACGT 5 cut(s) 28, 171, 335, 764, 1127
TaqI TCGA 5 cut(s) 51, 99, 443, 745, 1368
TasI AATT 9 cut(s) 405, 644, 713, 897, 1216, 1356, 1533, 1672, 1885
TfiI GAWTC 5 cut(s) 65, 742, 1196, 1295, 1759
TscAI CASTG 5 cut(s) 199, 226, 346, 784, 1696
TseFI GTSAC 2 cut(s) 169, 293
TseI GCWGC 7 cut(s) 391, 394, 419, 817, 820, 1133, 1322
Tsp45I GTSAC 2 cut(s) 169, 293
TspDTI ATGAA 8 cut(s) 552, 654, 717, 990, 1070, 1736, 1789, 1841
TspGWI ACGGA 2 cut(s) 192, 1288
TspRI CASTG 5 cut(s) 199, 226, 346, 784, 1696
Tth111I GACNNNGTC 2 cut(s) 122, 221
VneI GTGCAC 1 cut(s) 1527
VpaK11BI GGWCC 1 cut(s) 601
XapI RAATTY 2 cut(s) 1216, 1672
XceI RCATGY 1 cut(s) 827
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XmiI GTMKAC 2 cut(s) 1254, 1682
XspI CTAG 1 cut(s) 1550
ZraI GACGTC 1 cut(s) 169
Zsp2I ATGCAT 5 cut(s) 732, 1087, 1108, 1485, 1792
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.