RchiOBHm_Chr7g0228961

Pentatricopeptide repeat-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0004093
Physical Location & Seq
Forward (+)
52244945 .. 52246786
1842 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ20509

Sequence Viewer

Length: 1767 bp
ATGATCACTTCCGGCTTCCACCCACGTGGCCATATCCTCAACCGTTTGATCAACGTCTACTGCAAATCTTCAAATCTTCGCTACGCACTCCACCTGTTCGACCAAATTCCCAACCCGGACATCGTCGCCAGAACAACTCTGGTTTCGGCGTATTCCGGCGTCGGGGACGTCACGCTGGCCCGGAGAGTGTTCAGTGAAACTCCGTCCAGCATGAGAGACACTGTCAGCTACAATGCCATGATCGCAGGCTACTCTCATAATAGGGACGGCAATGCCGCCGTTGAGCTGTTTCGGGAAATGATGCGAGGCGGTTTTCGGCCCGATGAGTTTACCTTCACCAGTGTTCTGAGTGGTCTGGCGCTTATAGTGGAGGAGGAGAAGCAATGCCAGCAGCTGCATTGTGCAATTGTTAAGTCTGGAGCATTGTTGGCCACTTTGGTGTCGAATGCGTTGGTGTTTGATGAAATGCCTAAGAGAGATGAGCTGTCGTGGACGACGATGATTACTGGTTATGTGAGGAATGAGGACCTTGATGGAGCTCGACAGTTGCTAGATGGAATGGATGAAAAATTGGAAGTGGCGTGGAATGCAATGATTTCGGGTTATGTGCATCATGGTTTTTGTCATGAGGCATTGAAATTGTTCAGGGAAATGCATTTAATGGGGATTCGACAGGATGAGTTTACATACACGAGTGTTATCAGTGCTTGTGCTAACAATGGCTTATTTAAGCATGGGAAGCAGCTGCATGCTTACATACTAAGATCTGAAGCAAAACCGACTGTGGACTTTTCTTTATCTGTGAATAATGCATTGGTTACACTATACTTTAGGTGCGGTAAAATTGATGAAGCACGATATATTTTTAATAATATGTCGGTCAGAGATCTTGTTTCTTGGAATGCAATATTGTCAGGGTATGTGAGTGGAGGGCGCATCCAGGAAGCAAAATCCTTTTTTGAGGAAATGCCGGAAAGGAGTGGTCTAACTTGGACTGTAATAATATCAGGTTTAGCTCAAAATGGATGTGGGGAAGAAGCTATGAAGCTATTTAACCAAATGAGACTAGATGGTTTTAAACCCTGTGATTATGCATTTGCTGGAGCTATTACGTCTTGTGCTGCTCTGGGGGCGTTGGAGCATGGACGCCAGCTCCATGCTCAACTAATATGCTTGGGGCATGATTCAAGCCTTTCAGTTGGAAATTCACTTATCACAATGTATGCCAGATGTGGGGTTGTAGACGATGCTGACTGTGTGTTCCTCACAATGCCTTATATTGATTCCGTGTCGTGGAATGCTATGATCGCAGCCCTGGCACAACATGGATATGGTGTCCAAGCAATTAGACTTTTCAAACAGATGTTGGGGGAAGATATAATGCCAGATAGAATAACTTTCCTCACTATTCTGTCAGCTTGTAGTCATGCTGGCTTAGTTAAAGAAGGACGCCAATATTTTCGTTTAATGCATGACTCTTATGGTATTGCCCCTGGTGAAGACCATTATGCTCGTATGATTGATTTGTTGTGTCGATCTGGGGAGTTGACAGAGGCCAAGGACTTAATCAAATCAATGCCTTTTGAACCAGGTGCACCAATTTGGGAGGCTATTCTAGCTGGTTGCCGGACTCATGGGAATATGGATTTAGGTATTCAAGCTGCAGAACGACTCTTTGAGCTGGTGCCCCAGCATGATGGAACCTATGTACTTTTGTCGAACTTGTATGCTGCTTCAGGCCGTTGGGATAATGTGGCTAAGGTGTGA

Protein Analysis

588

Amino Acids

65.31

Weight (kDa)

5.86

Isoelectric Point (pI)

32.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 72 - 120 2.9e-15 PPR repeat family
PPR PF01535 75 - 105 2.4e-07 PPR repeat
PPR_2 PF13041 193 - 239 1.7e-12 PPR repeat family
PPR PF01535 193 - 223 2.7e-09 PPR repeat
PPR_2 PF13041 296 - 326 8.2e-06 PPR repeat family
PPR PF01535 298 - 326 1.2e-06 PPR repeat
PPR_2 PF13041 330 - 373 3.6e-07 PPR repeat family
PPR PF01535 330 - 359 6.1e-08 PPR repeat
PPR_2 PF13041 428 - 475 4.8e-10 PPR repeat family
PPR PF01535 430 - 459 6.1e-06 PPR repeat
E_motif PF20431 545 - 588 3e-10 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 171
AccB1I GGYRCC 1 cut(s) 1684
AccI GTMKAC 2 cut(s) 57, 1242
AciI CCGC 3 cut(s) 276, 309, 837
AcoI YGGCCR 2 cut(s) 28, 429
AcsI RAATTY 2 cut(s) 105, 1204
AcuI CTGAAG 2 cut(s) 789, 1719
AcvI CACGTG 1 cut(s) 26
AcyI GRCGYC 4 cut(s) 159, 168, 1147, 1450
AfaI GTAC 1 cut(s) 1710
AfiI CCNNNNNNNGG 3 cut(s) 162, 1233, 1293
AgsI TTSAA 6 cut(s) 72, 637, 1188, 1357, 1586, 1658
AjnI CCWGG 4 cut(s) 939, 1314, 1492, 1588
AjuI GAANNNNNNNTTGG 2 cut(s) 797, 829
AleI CACNNNNGTG 2 cut(s) 24, 437
Alw21I GWGCWC 2 cut(s) 541, 1597
Alw26I GTCTC 2 cut(s) 210, 1057
Alw44I GTGCAC 1 cut(s) 1593
AlwNI CAGNNNCTG 1 cut(s) 394
AoxI GGCC 6 cut(s) 28, 177, 317, 429, 1554, 1738
ApaLI GTGCAC 1 cut(s) 1593
ApeKI GCWGC 8 cut(s) 391, 394, 742, 745, 1121, 1310, 1661, 1730
ApoI RAATTY 2 cut(s) 105, 1204
Asp700I GAANNNNTTC 1 cut(s) 641
AspLEI GCGC 2 cut(s) 361, 936
AspS9I GGNCC 3 cut(s) 178, 318, 526
AsuC2I CCSGG 2 cut(s) 116, 181
AsuHPI GGTGA 2 cut(s) 328, 1508
AvaII GGWCC 1 cut(s) 526
BaeGI GKGCMC 2 cut(s) 1597, 1689
BalI TGGCCA 2 cut(s) 30, 431
BanI GGYRCC 1 cut(s) 1684
BanII GRGCYC 1 cut(s) 541
BauI CACGAG 1 cut(s) 691
BbrPI CACGTG 1 cut(s) 26
BbsI GAAGAC 1 cut(s) 1506
Bbv12I GWGCWC 2 cut(s) 541, 1597
BbvI GCAGC 8 cut(s) 381, 403, 732, 754, 1108, 1322, 1648, 1717
BccI CCATC 4 cut(s) 527, 548, 1064, 1691
BceAI ACGGC 3 cut(s) 263, 283, 1725
BcgI CGANNNNNNTGC 2 cut(s) 579, 613
BciT130I CCWGG 4 cut(s) 941, 1316, 1494, 1590
BclI TGATCA 2 cut(s) 3, 48
BcnI CCSGG 2 cut(s) 116, 181
BcoDI GTCTC 2 cut(s) 210, 1057
BfaI CTAG 3 cut(s) 551, 1067, 1616
BfmI CTRYAG 1 cut(s) 1662
BfoI RGCGCY 1 cut(s) 362
BglII AGATCT 2 cut(s) 764, 886
BisI GCNGC 9 cut(s) 276, 392, 395, 743, 746, 1122, 1311, 1662, 1731
BlsI GCNGC 9 cut(s) 277, 393, 396, 744, 747, 1123, 1312, 1663, 1732
Bme1390I CCNGG 6 cut(s) 116, 181, 941, 1316, 1494, 1590
Bme18I GGWCC 1 cut(s) 526
BmgT120I GGNCC 3 cut(s) 178, 318, 526
BmiI GGNNCC 2 cut(s) 1686, 1702
BmrFI CCNGG 6 cut(s) 116, 181, 941, 1316, 1494, 1590
BmsI GCATC 4 cut(s) 291, 619, 945, 1237
BpiI GAAGAC 1 cut(s) 1506
BpmI CTGGAG 2 cut(s) 438, 1122
Bpu10I CCTNAGC 1 cut(s) 1758
BpuMI CCSGG 2 cut(s) 116, 181
BsaAI YACGTR 1 cut(s) 26
BsaHI GRCGYC 4 cut(s) 159, 168, 1147, 1450
BsaJI CCNNGG 3 cut(s) 1314, 1492, 1557
BsaXI ACNNNNNCTCC 2 cut(s) 1137, 1167
Bsc4I CCNNNNNNNGG 3 cut(s) 162, 1233, 1293
Bse1I ACTGG 2 cut(s) 339, 511
Bse3DI GCAATG 3 cut(s) 277, 389, 597
BseBI CCWGG 4 cut(s) 941, 1316, 1494, 1590
BseDI CCNNGG 3 cut(s) 1314, 1492, 1557
BseGI GGATG 4 cut(s) 568, 682, 936, 1031
BseLI CCNNNNNNNGG 3 cut(s) 162, 1233, 1293
BseMI GCAATG 3 cut(s) 277, 389, 597
BseMII CTCAG 1 cut(s) 338
BseNI ACTGG 2 cut(s) 339, 511
BseRI GAGGAG 2 cut(s) 386, 389
BseSI GKGCMC 2 cut(s) 1597, 1689
BseXI GCAGC 8 cut(s) 381, 403, 732, 754, 1108, 1322, 1648, 1717
BseYI CCCAGC 1 cut(s) 1689
BshFI GGCC 6 cut(s) 30, 179, 319, 431, 1556, 1740
BshNI GGYRCC 1 cut(s) 1684
BsiHKAI GWGCWC 2 cut(s) 541, 1597
BsiSI CCGG 6 cut(s) 12, 116, 156, 181, 971, 1627
BslFI GGGAC 2 cut(s) 179, 278
BslI CCNNNNNNNGG 3 cut(s) 162, 1233, 1293
BsmAI GTCTC 2 cut(s) 210, 1057
BsmFI GGGAC 2 cut(s) 179, 278
BsmI GAATGC 4 cut(s) 451, 592, 907, 1303
BsnI GGCC 6 cut(s) 30, 179, 319, 431, 1556, 1740
Bsp1286I GDGCHC 3 cut(s) 541, 1597, 1689
Bsp143I GATC 7 cut(s) 3, 48, 240, 764, 886, 1305, 1535
BspACI CCGC 3 cut(s) 276, 309, 837
BspANI GGCC 6 cut(s) 30, 179, 319, 431, 1556, 1740
BspCNI CTCAG 1 cut(s) 339
BspHI TCATGA 1 cut(s) 625
BspLI GGNNCC 2 cut(s) 1686, 1702
BspMAI CTGCAG 1 cut(s) 1666
BspT107I GGYRCC 1 cut(s) 1684
BsrDI GCAATG 3 cut(s) 277, 389, 597
BsrI ACTGG 2 cut(s) 339, 511
BssECI CCNNGG 3 cut(s) 1314, 1492, 1557
BssMI GATC 7 cut(s) 3, 48, 240, 764, 886, 1305, 1535
BssNI GRCGYC 4 cut(s) 159, 168, 1147, 1450
BssSI CACGAG 1 cut(s) 691
BssT1I CCWWGG 1 cut(s) 1557
Bst2BI CACGAG 1 cut(s) 691
Bst2UI CCWGG 4 cut(s) 941, 1316, 1494, 1590
Bst4CI ACNGT 6 cut(s) 44, 223, 546, 784, 997, 1256
BstACI GRCGYC 4 cut(s) 159, 168, 1147, 1450
BstBAI YACGTR 1 cut(s) 26
BstC8I GCNNGC 6 cut(s) 177, 247, 389, 750, 1151, 1432
BstDEI CTNAG 5 cut(s) 347, 471, 761, 1435, 1758
BstF5I GGATG 4 cut(s) 568, 682, 936, 1031
BstH2I RGCGCY 1 cut(s) 362
BstHHI GCGC 2 cut(s) 361, 936
BstKTI GATC 7 cut(s) 6, 51, 243, 767, 889, 1308, 1538
BstMAI GTCTC 2 cut(s) 210, 1057
BstMBI GATC 7 cut(s) 3, 48, 240, 764, 886, 1305, 1535
BstMWI GCNNNNNNNGC 9 cut(s) 242, 388, 428, 587, 739, 1130, 1307, 1316, 1616
BstNI CCWGG 4 cut(s) 941, 1316, 1494, 1590
BstNSI RCATGY 1 cut(s) 752
BstSCI CCNGG 6 cut(s) 114, 179, 939, 1314, 1492, 1588
BstSFI CTRYAG 1 cut(s) 1662
BstSLI GKGCMC 2 cut(s) 1597, 1689
BstV1I GCAGC 8 cut(s) 381, 403, 732, 754, 1108, 1322, 1648, 1717
BstV2I GAAGAC 1 cut(s) 1506
BstX2I RGATCY 2 cut(s) 764, 886
BstXI CCANNNNNNTGG 2 cut(s) 26, 1697
BstYI RGATCY 2 cut(s) 764, 886
BsuRI GGCC 6 cut(s) 30, 179, 319, 431, 1556, 1740
BtsCI GGATG 4 cut(s) 568, 682, 936, 1031
BtsIMutI CAGTG 4 cut(s) 199, 219, 346, 709
Cac8I GCNNGC 6 cut(s) 177, 247, 389, 750, 1151, 1432
CaiI CAGNNNCTG 1 cut(s) 394
CciI TCATGA 1 cut(s) 625
CfoI GCGC 2 cut(s) 361, 936
Cfr13I GGNCC 3 cut(s) 178, 318, 526
CseI GACGC 3 cut(s) 148, 1155, 1458
CsiI ACCWGGT 1 cut(s) 1588
Csp6I GTAC 1 cut(s) 1709
CviQI GTAC 1 cut(s) 1709
DdeI CTNAG 5 cut(s) 347, 471, 761, 1435, 1758
DpnI GATC 7 cut(s) 5, 50, 242, 766, 888, 1307, 1537
DpnII GATC 7 cut(s) 3, 48, 240, 764, 886, 1305, 1535
DraI TTTAAA 1 cut(s) 1078
EaeI YGGCCR 2 cut(s) 28, 429
Ecl136II GAGCTC 1 cut(s) 539
Eco130I CCWWGG 1 cut(s) 1557
Eco24I GRGCYC 1 cut(s) 541
Eco47I GGWCC 1 cut(s) 526
Eco53kI GAGCTC 1 cut(s) 539
Eco57I CTGAAG 2 cut(s) 789, 1719
Eco72I CACGTG 1 cut(s) 26
EcoICRI GAGCTC 1 cut(s) 539
EcoO109I RGGNCCY 1 cut(s) 526
EcoRII CCWGG 4 cut(s) 939, 1314, 1492, 1588
EcoT14I CCWWGG 1 cut(s) 1557
EcoT22I ATGCAT 4 cut(s) 657, 814, 1096, 1473
EcoT38I GRGCYC 1 cut(s) 541
ErhI CCWWGG 1 cut(s) 1557
FaqI GGGAC 2 cut(s) 179, 278
FbaI TGATCA 2 cut(s) 3, 48
FblI GTMKAC 2 cut(s) 57, 1242
Fnu4HI GCNGC 9 cut(s) 276, 392, 395, 743, 746, 1122, 1311, 1662, 1731
FokI GGATG 4 cut(s) 575, 689, 923, 1038
FriOI GRGCYC 1 cut(s) 541
Fsp4HI GCNGC 9 cut(s) 276, 392, 395, 743, 746, 1122, 1311, 1662, 1731
FspBI CTAG 3 cut(s) 551, 1067, 1616
GlaI GCGC 2 cut(s) 360, 935
GluI GCNGC 9 cut(s) 276, 392, 395, 743, 746, 1122, 1311, 1662, 1731
GsaI CCCAGC 1 cut(s) 1693
GsuI CTGGAG 2 cut(s) 438, 1122
HaeII RGCGCY 1 cut(s) 362
HaeIII GGCC 6 cut(s) 30, 179, 319, 431, 1556, 1740
HapII CCGG 6 cut(s) 12, 116, 156, 181, 971, 1627
HgaI GACGC 3 cut(s) 148, 1155, 1458
HhaI GCGC 2 cut(s) 361, 936
Hin1I GRCGYC 4 cut(s) 159, 168, 1147, 1450
Hin6I GCGC 2 cut(s) 359, 934
HinP1I GCGC 2 cut(s) 359, 934
HincII GTYRAC 1 cut(s) 1548
HindII GTYRAC 1 cut(s) 1548
HinfI GANTC 6 cut(s) 667, 1184, 1283, 1475, 1630, 1671
HpaII CCGG 6 cut(s) 12, 116, 156, 181, 971, 1627
HphI GGTGA 2 cut(s) 328, 1508
Hpy166II GTNNAC 8 cut(s) 58, 330, 492, 684, 787, 1243, 1548, 1595
Hpy188I TCNGA 3 cut(s) 348, 769, 884
Hpy188III TCNNGA 3 cut(s) 293, 417, 626
Hpy8I GTNNAC 8 cut(s) 58, 330, 492, 684, 787, 1243, 1548, 1595
Hpy99I CGWCG 3 cut(s) 128, 164, 499
HpyAV CCTTC 2 cut(s) 343, 1439
HpyCH4III ACNGT 6 cut(s) 44, 223, 546, 784, 997, 1256
HpyCH4IV ACGT 4 cut(s) 25, 54, 168, 1112
HpyF10VI GCNNNNNNNGC 9 cut(s) 242, 388, 428, 587, 739, 1130, 1307, 1316, 1616
HpyF3I CTNAG 5 cut(s) 347, 471, 761, 1435, 1758
HpySE526I ACGT 4 cut(s) 25, 54, 168, 1112
Hsp92I GRCGYC 4 cut(s) 159, 168, 1147, 1450
HspAI GCGC 2 cut(s) 359, 934
Ksp22I TGATCA 2 cut(s) 3, 48
Kzo9I GATC 7 cut(s) 3, 48, 240, 764, 886, 1305, 1535
LmnI GCTCC 5 cut(s) 419, 536, 1103, 1138, 1158
Lsp1109I GCAGC 8 cut(s) 381, 403, 732, 754, 1108, 1322, 1648, 1717
LweI GCATC 4 cut(s) 291, 619, 945, 1237
MabI ACCWGGT 1 cut(s) 1588
MaeI CTAG 3 cut(s) 551, 1067, 1616
MaeII ACGT 4 cut(s) 25, 54, 168, 1112
MaeIII GTNAC 2 cut(s) 169, 817
MalI GATC 7 cut(s) 5, 50, 242, 766, 888, 1307, 1537
MboI GATC 7 cut(s) 3, 48, 240, 764, 886, 1305, 1535
MboII GAAGA 5 cut(s) 60, 68, 1046, 1385, 1511
MfeI CAATTG 1 cut(s) 405
MflI RGATCY 2 cut(s) 764, 886
MhlI GDGCHC 3 cut(s) 541, 1597, 1689
MlsI TGGCCA 2 cut(s) 30, 431
MluCI AATT 8 cut(s) 105, 405, 569, 638, 843, 1204, 1344, 1599
MluNI TGGCCA 2 cut(s) 30, 431
MlyI GAGTC 3 cut(s) 1469, 1624, 1665
MmeI TCCRAC 2 cut(s) 1116, 1180
Mox20I TGGCCA 2 cut(s) 30, 431
Mph1103I ATGCAT 4 cut(s) 657, 814, 1096, 1473
MroXI GAANNNNTTC 1 cut(s) 641
MscI TGGCCA 2 cut(s) 30, 431
MseI TTAA 9 cut(s) 411, 659, 729, 867, 1053, 1077, 1440, 1466, 1565
MslI CAYNNNNRTG 3 cut(s) 24, 437, 1329
Msp20I TGGCCA 2 cut(s) 30, 431
MspA1I CMGCKG 2 cut(s) 394, 745
MspI CCGG 6 cut(s) 12, 116, 156, 181, 971, 1627
MspR9I CCNGG 6 cut(s) 116, 181, 941, 1316, 1494, 1590
MunI CAATTG 1 cut(s) 405
Mva1269I GAATGC 4 cut(s) 451, 592, 907, 1303
MvaI CCWGG 4 cut(s) 941, 1316, 1494, 1590
MwoI GCNNNNNNNGC 9 cut(s) 242, 388, 428, 587, 739, 1130, 1307, 1316, 1616
NciI CCSGG 2 cut(s) 116, 181
NdeII GATC 7 cut(s) 3, 48, 240, 764, 886, 1305, 1535
NlaIV GGNNCC 2 cut(s) 1686, 1702
NmuCI GTSAC 1 cut(s) 169
NsiI ATGCAT 4 cut(s) 657, 814, 1096, 1473
NspI RCATGY 1 cut(s) 752
OliI CACNNNNGTG 2 cut(s) 24, 437
PaeI GCATGC 1 cut(s) 752
PagI TCATGA 1 cut(s) 625
PcsI WCGNNNNNNNCGW 1 cut(s) 494
PctI GAATGC 4 cut(s) 451, 592, 907, 1303
PdmI GAANNNNTTC 1 cut(s) 641
PfeI GAWTC 3 cut(s) 667, 1184, 1283
PflFI GACNNNGTC 2 cut(s) 122, 221
PfoI TCCNGGA 1 cut(s) 939
PkrI GCNGC 9 cut(s) 277, 393, 396, 744, 747, 1123, 1312, 1663, 1732
PleI GAGTC 3 cut(s) 1469, 1624, 1665
PmaCI CACGTG 1 cut(s) 26
PmlI CACGTG 1 cut(s) 26
PpsI GAGTC 3 cut(s) 1469, 1624, 1665
Ppu21I YACGTR 1 cut(s) 26
PpuMI RGGWCCY 1 cut(s) 526
Psp124BI GAGCTC 1 cut(s) 541
Psp5II RGGWCCY 1 cut(s) 526
Psp6I CCWGG 4 cut(s) 939, 1314, 1492, 1588
PspCI CACGTG 1 cut(s) 26
PspFI CCCAGC 1 cut(s) 1689
PspGI CCWGG 4 cut(s) 939, 1314, 1492, 1588
PspN4I GGNNCC 2 cut(s) 1686, 1702
PspPI GGNCC 3 cut(s) 178, 318, 526
PspPPI RGGWCCY 1 cut(s) 526
PstI CTGCAG 1 cut(s) 1666
PstNI CAGNNNCTG 1 cut(s) 394
PsuI RGATCY 2 cut(s) 764, 886
PsyI GACNNNGTC 2 cut(s) 122, 221
PvuII CAGCTG 2 cut(s) 394, 745
RsaI GTAC 1 cut(s) 1710
RsaNI GTAC 1 cut(s) 1709
RseI CAYNNNNRTG 3 cut(s) 24, 437, 1329
SacI GAGCTC 1 cut(s) 541
SaqAI TTAA 9 cut(s) 411, 659, 729, 867, 1053, 1077, 1440, 1466, 1565
SatI GCNGC 9 cut(s) 276, 392, 395, 743, 746, 1122, 1311, 1662, 1731
Sau3AI GATC 7 cut(s) 3, 48, 240, 764, 886, 1305, 1535
Sau96I GGNCC 3 cut(s) 178, 318, 526
SchI GAGTC 3 cut(s) 1469, 1624, 1665
ScrFI CCNGG 6 cut(s) 116, 181, 941, 1316, 1494, 1590
SduI GDGCHC 3 cut(s) 541, 1597, 1689
SexAI ACCWGGT 1 cut(s) 1588
SfaNI GCATC 4 cut(s) 291, 619, 945, 1237
SfcI CTRYAG 1 cut(s) 1662
SinI GGWCC 1 cut(s) 526
SmiMI CAYNNNNRTG 3 cut(s) 24, 437, 1329
SphI GCATGC 1 cut(s) 752
Sse9I AATT 8 cut(s) 105, 405, 569, 638, 843, 1204, 1344, 1599
SsiI CCGC 3 cut(s) 276, 309, 837
SspI AATATT 2 cut(s) 909, 1457
SspMI CTAG 3 cut(s) 551, 1067, 1616
SstI GAGCTC 1 cut(s) 541
StyD4I CCNGG 6 cut(s) 114, 179, 939, 1314, 1492, 1588
StyI CCWWGG 1 cut(s) 1557
TaaI ACNGT 6 cut(s) 44, 223, 546, 784, 997, 1256
TaiI ACGT 4 cut(s) 28, 57, 171, 1115
TaqI TCGA 6 cut(s) 99, 443, 541, 670, 1534, 1718
TaqII GACCGA 1 cut(s) 868
TasI AATT 8 cut(s) 105, 405, 569, 638, 843, 1204, 1344, 1599
TatI WGTACW 1 cut(s) 1708
TauI GCSGC 1 cut(s) 278
TfiI GAWTC 3 cut(s) 667, 1184, 1283
Tru1I TTAA 9 cut(s) 411, 659, 729, 867, 1053, 1077, 1440, 1466, 1565
Tru9I TTAA 9 cut(s) 411, 659, 729, 867, 1053, 1077, 1440, 1466, 1565
TscAI CASTG 4 cut(s) 199, 226, 346, 709
TseFI GTSAC 1 cut(s) 169
TseI GCWGC 8 cut(s) 391, 394, 742, 745, 1121, 1310, 1661, 1730
Tsp45I GTSAC 1 cut(s) 169
TspDTI ATGAA 4 cut(s) 477, 579, 864, 1058
TspGWI ACGGA 2 cut(s) 192, 1276
TspRI CASTG 4 cut(s) 199, 226, 346, 709
Tth111I GACNNNGTC 2 cut(s) 122, 221
VneI GTGCAC 1 cut(s) 1593
VpaK11BI GGWCC 1 cut(s) 526
XapI RAATTY 2 cut(s) 105, 1204
XceI RCATGY 1 cut(s) 752
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XmiI GTMKAC 2 cut(s) 57, 1242
XmnI GAANNNNTTC 1 cut(s) 641
XspI CTAG 3 cut(s) 551, 1067, 1616
ZraI GACGTC 1 cut(s) 169
Zsp2I ATGCAT 4 cut(s) 657, 814, 1096, 1473
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.