FvH4_6g08990

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
OG0004093
Physical Location & Seq
Forward (+)
5303606 .. 5304790
1185 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g08990.t1

Sequence Viewer

Length: 324 bp
GTCTCTGTGGGGGTTAAACGGGCTGGGAGGGGTCCACCATTTAAATCAAACAAGAAGGTTCCGACTTCACAGGAGCTCCAAGATCACCGGTCGCGCTTCTGTTTGGTACTTCAAACTTCAAACACTACAGTGAGACTGTCATGCGCCAAGTGTAAAGAATATGATGCTTTATGGCTCAGACTAGAGCAAGAGCAAGGTCTCATAAAAATGAGATGGATCTTCTTTCTTATTTCCAATGATGGGAAGTTATGGAAATCAAATCTGGAAGTTGAAGGACACGGTAAAGAGCTACACTATGACCAGTTTACTTGCAGTTATCTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

108

Amino Acids

12.42

Weight (kDa)

9.33

Isoelectric Point (pI)

62.13

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 94
AclWI GGATC 1 cut(s) 224
AfaI GTAC 1 cut(s) 108
AfiI CCNNNNNNNGG 1 cut(s) 240
AgeI ACCGGT 1 cut(s) 87
AgsI TTSAA 3 cut(s) 113, 120, 272
AleI CACNNNNGTG 1 cut(s) 128
AluBI AGCT 2 cut(s) 76, 289
AluI AGCT 2 cut(s) 76, 289
Alw21I GWGCWC 1 cut(s) 78
Alw26I GTCTC 3 cut(s) 7, 127, 203
AlwI GGATC 1 cut(s) 224
AsiGI ACCGGT 1 cut(s) 87
AspLEI GCGC 2 cut(s) 96, 146
AspS9I GGNCC 1 cut(s) 32
AsuHPI GGTGA 1 cut(s) 77
AvaII GGWCC 1 cut(s) 32
BanII GRGCYC 1 cut(s) 78
Bbv12I GWGCWC 1 cut(s) 78
BccI CCATC 2 cut(s) 207, 233
BcoDI GTCTC 3 cut(s) 7, 127, 203
BfaI CTAG 2 cut(s) 182, 322
BfmI CTRYAG 1 cut(s) 126
Bme18I GGWCC 1 cut(s) 32
BmgT120I GGNCC 1 cut(s) 32
BmiI GGNNCC 2 cut(s) 33, 60
BmsI GCATC 1 cut(s) 154
BsaI GGTCTC 1 cut(s) 203
BsaWI WCCGGW 1 cut(s) 87
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 240
Bse118I RCCGGY 1 cut(s) 87
Bse1I ACTGG 1 cut(s) 301
BseLI CCNNNNNNNGG 1 cut(s) 240
BseMII CTCAG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 301
BseYI CCCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 94
Bsh1285I CGRYCG 1 cut(s) 92
BshTI ACCGGT 1 cut(s) 87
BsiEI CGRYCG 1 cut(s) 92
BsiHKAI GWGCWC 1 cut(s) 78
BsiSI CCGG 1 cut(s) 88
BslI CCNNNNNNNGG 1 cut(s) 240
BsmAI GTCTC 3 cut(s) 7, 127, 203
Bso31I GGTCTC 1 cut(s) 203
Bsp1286I GDGCHC 1 cut(s) 78
Bsp143I GATC 2 cut(s) 82, 216
BspCNI CTCAG 1 cut(s) 189
BspFNI CGCG 1 cut(s) 94
BspLI GGNNCC 2 cut(s) 33, 60
BspPI GGATC 1 cut(s) 224
BspTNI GGTCTC 1 cut(s) 203
BsrFI RCCGGY 1 cut(s) 87
BsrI ACTGG 1 cut(s) 301
BssAI RCCGGY 1 cut(s) 87
BssMI GATC 2 cut(s) 82, 216
Bst4CI ACNGT 3 cut(s) 130, 138, 281
BstDEI CTNAG 1 cut(s) 176
BstFNI CGCG 1 cut(s) 94
BstHHI GCGC 2 cut(s) 96, 146
BstKTI GATC 2 cut(s) 85, 219
BstMAI GTCTC 3 cut(s) 7, 127, 203
BstMBI GATC 2 cut(s) 82, 216
BstMCI CGRYCG 1 cut(s) 92
BstSFI CTRYAG 1 cut(s) 126
BstUI CGCG 1 cut(s) 94
BstX2I RGATCY 1 cut(s) 216
BstYI RGATCY 1 cut(s) 216
BtsIMutI CAGTG 1 cut(s) 135
CfoI GCGC 2 cut(s) 96, 146
Cfr10I RCCGGY 1 cut(s) 87
Cfr13I GGNCC 1 cut(s) 32
Csp6I GTAC 1 cut(s) 107
CspAI ACCGGT 1 cut(s) 87
CviAII CATG 1 cut(s) 141
CviJI RGCY 4 cut(s) 23, 76, 175, 289
CviKI_1 RGCY 4 cut(s) 23, 76, 175, 289
CviQI GTAC 1 cut(s) 107
DdeI CTNAG 1 cut(s) 176
DpnI GATC 2 cut(s) 84, 218
DpnII GATC 2 cut(s) 82, 216
DraI TTTAAA 1 cut(s) 43
Ecl136II GAGCTC 1 cut(s) 76
Eco24I GRGCYC 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 203
Eco47I GGWCC 1 cut(s) 32
Eco53kI GAGCTC 1 cut(s) 76
EcoICRI GAGCTC 1 cut(s) 76
EcoT38I GRGCYC 1 cut(s) 78
FaeI CATG 1 cut(s) 144
FaiI YATR 6 cut(s) 142, 162, 172, 203, 250, 297
FatI CATG 1 cut(s) 140
FriOI GRGCYC 1 cut(s) 78
FspBI CTAG 2 cut(s) 182, 322
GlaI GCGC 2 cut(s) 95, 145
GsaI CCCAGC 1 cut(s) 27
HapII CCGG 1 cut(s) 88
HhaI GCGC 2 cut(s) 96, 146
Hin1II CATG 1 cut(s) 144
Hin6I GCGC 2 cut(s) 94, 144
HinP1I GCGC 2 cut(s) 94, 144
HpaII CCGG 1 cut(s) 88
HphI GGTGA 1 cut(s) 77
Hpy166II GTNNAC 2 cut(s) 35, 306
Hpy188I TCNGA 2 cut(s) 63, 179
Hpy188III TCNNGA 1 cut(s) 263
Hpy8I GTNNAC 2 cut(s) 35, 306
HpyAV CCTTC 2 cut(s) 49, 266
HpyCH4III ACNGT 3 cut(s) 130, 138, 281
HpyCH4V TGCA 1 cut(s) 312
HpyF3I CTNAG 1 cut(s) 176
Hsp92II CATG 1 cut(s) 144
HspAI GCGC 2 cut(s) 94, 144
Kzo9I GATC 2 cut(s) 82, 216
LmnI GCTCC 2 cut(s) 73, 81
LpnPI CCDG 5 cut(s) 9, 56, 101, 248, 314
LweI GCATC 1 cut(s) 154
MaeI CTAG 2 cut(s) 182, 322
MalI GATC 2 cut(s) 84, 218
MboI GATC 2 cut(s) 82, 216
MboII GAAGA 1 cut(s) 211
MflI RGATCY 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 78
MmeI TCCRAC 1 cut(s) 86
MnlI CCTC 1 cut(s) 21
MseI TTAA 2 cut(s) 15, 42
MslI CAYNNNNRTG 2 cut(s) 128, 206
MspI CCGG 1 cut(s) 88
MvnI CGCG 1 cut(s) 94
NdeII GATC 2 cut(s) 82, 216
NlaIII CATG 1 cut(s) 144
NlaIV GGNNCC 2 cut(s) 33, 60
OliI CACNNNNGTG 1 cut(s) 128
PinAI ACCGGT 1 cut(s) 87
Psp124BI GAGCTC 1 cut(s) 78
PspFI CCCAGC 1 cut(s) 23
PspN4I GGNNCC 2 cut(s) 33, 60
PspPI GGNCC 1 cut(s) 32
PsuI RGATCY 1 cut(s) 216
RsaI GTAC 1 cut(s) 108
RsaNI GTAC 1 cut(s) 107
RseI CAYNNNNRTG 2 cut(s) 128, 206
SacI GAGCTC 1 cut(s) 78
SaqAI TTAA 2 cut(s) 15, 42
Sau3AI GATC 2 cut(s) 82, 216
Sau96I GGNCC 1 cut(s) 32
SduI GDGCHC 1 cut(s) 78
SetI ASST 4 cut(s) 60, 78, 199, 291
SfaNI GCATC 1 cut(s) 154
SfcI CTRYAG 1 cut(s) 126
SinI GGWCC 1 cut(s) 32
SmiI ATTTAAAT 1 cut(s) 43
SmiMI CAYNNNNRTG 2 cut(s) 128, 206
SspMI CTAG 2 cut(s) 182, 322
SstI GAGCTC 1 cut(s) 78
SwaI ATTTAAAT 1 cut(s) 43
TaaI ACNGT 3 cut(s) 130, 138, 281
Tru1I TTAA 2 cut(s) 15, 42
Tru9I TTAA 2 cut(s) 15, 42
TscAI CASTG 1 cut(s) 135
TspRI CASTG 1 cut(s) 135
VpaK11BI GGWCC 1 cut(s) 32
XspI CTAG 2 cut(s) 182, 322
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.