Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Reverse (-)

15750757 .. 15753455

Gene Structure 2699 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00230820.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1842 bp

ATGATCGCTTCCGGCTTCCACCCACGTGGCCATATCCTCAACCGTTTGATCGACGTCTACTGCAAATCTTCAAATCTTCGCTACGCACTCCACCTGTTCGACCAAATTCCCAACCCGGACATCGTCGCCAGAATGACTCTGGTCTCGGCATATTCCGGCGTCGGGGACCTCATGTTGGCCCGGAGAGTCTTCAGTGAAACTCCTCTCAGCATGAGAGACACTGTTAGCTACAATGCCATGATCGCAGGCTACTCTCATAACAGGGACGGCAATGCCGCCGTTGAGCTGTTTCGTGACATGAGGCGAGGCGGTTTTCGGCCCGATGAGTTTACCTTCACCAGTGTGCTGAGTGGTCTGGCGCTTATAGTGGAGGAGGAGAAGCAATGTCAGCAGCTACATTGTGCAATTGTTAAGTCCGGAGCATTGCTGGCCACTTCAGTGTCGAATGCTTTGGTGTCTGTGTCTGTTAAGTGTGCTTCTTCGCCGTTGGTGTCGTCGTCATCGGTGGTGGTGGCCGCAGCGAGGAAGGTGTTTGATGAAATGCCTAAGAGGGATGAGTTGTCGTGGACGACGATGATCACTGGTTATGTGAGGAATGAGGACCTTGATGGAGCTAGCCAGTTGCTTGATGGGATGGATGAAAAATTGGAAGTGGCATGGAATGCGATGATTTCGGGTTATGTGCATCATGGTTTTTGTCATGAGGCATTGAAGTTGTTTAGGGAAATGCATTTAATGGGGATTCGCCAGGATGAGTTTACGTACACGAGTGTTATCAGTGCTTGTGCTAACAATGGGTTATTTAAGCATGGCAAGCAGCTGCATGCTTACATACTAAGATCTGAAGCAAAACCGACTGTGGACTTTTCTTTATCTGTGAATAATGCATTGGTTACACTATACTTTAGGTGCGGTAAAATTGATGAAGCACGATATATTTTTAATAATATGTCCGTCAGAGATCTTGTTTCTTGGAATGCAATATTGTCAGGGTATGTGAGTGGAGGGCGCATCCAGGAAGCAAAATCCTTTTTTGAGGAAATGCCGGAAAGGAGTGGTTTAACTTGGACTGTAATAATATCAGGTTTAGCTCAAAATGGATGTGGGGAAGAAGCTGTGAAGCTATTTAACCAAATGAGACTAGATGGTTTTAAACCCTGTGATTATGCATTTGCTGGAGCTATTACGTCTTGTGCTGCTCTGGGGGCGTTGGAGCATGGACGCCAGCTCCATGCTCAACTAATATGCTTGGGGCATGATTCAAGCCTTTCAGTTGGAAATTCACTTATCACAATGTATGCCAGATGTGGGGTTGTAGACGATGCTTACTGTGTGTTCCTCACAATGCCTTATATTGATTCCGTGTCATGGAATGCTATGATCGCAGCTCTGGCACAACATGGATATGGTGTCCAAGCAATTAGACTTTTCAAACAGATGTTGGGGGAAGATATAATGCCAGATAGAATAACTTTCCTCACTATTCTGTCAGCTTGTAGTCATGCTGGTTTAGTTAAAGAAGGACGCCAATATTTTCGTTTAATGCATGACTCTTATGGTATTGCCCCTGGTGAAGACCATTATGCTCGTATGATTGATTTATTGTGCCGATCTGGGGAGTTGACAGAGGCCAAGGACTTAATCAAATCAATGCCTTTTGAACCAGGTGCACCAATTTGGGAGGCTATTCTAGCTGGTTGCCGGACTCATGGGAATATGGATTTAGGTATTCAAGCTGCAGAACGACTCTTTGAGCTGGTGCCCCAGCATGATGGAACCTATATACTTTTGTCGAACTTGTATGCTGCTTTAGGCCGTTGGGATAATGTGGCTAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

613

Amino Acids

67.76

Weight (kDa)

6.06

Isoelectric Point (pI)

34.43

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	72 - 120	1.8e-15	PPR repeat family
PPR	PF01535	75 - 105	4.4e-07	PPR repeat
PPR_2	PF13041	218 - 264	1.8e-12	PPR repeat family
PPR	PF01535	218 - 248	2.8e-09	PPR repeat
PPR_2	PF13041	321 - 351	8.6e-06	PPR repeat family
PPR	PF01535	323 - 351	1.2e-06	PPR repeat
PPR_2	PF13041	355 - 398	5.4e-07	PPR repeat family
PPR	PF01535	355 - 384	1e-07	PPR repeat
PPR_2	PF13041	453 - 500	5.1e-10	PPR repeat family
PPR	PF01535	455 - 484	6.4e-06	PPR repeat
E_motif	PF20431	570 - 613	3.5e-10	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	57
AccB1I	GGYRCC	1 cut(s)	1759
AccI	GTMKAC	2 cut(s)	57, 1317
AccIII	TCCGGA	1 cut(s)	416
AciI	CCGC	4 cut(s)	276, 309, 516, 912
AcoI	YGGCCR	3 cut(s)	28, 429, 513
AcsI	RAATTY	2 cut(s)	105, 1279
AcuI	CTGAAG	3 cut(s)	175, 420, 864
AcvI	CACGTG	1 cut(s)	26
AcyI	GRCGYC	4 cut(s)	54, 159, 1222, 1525
AfaI	GTAC	1 cut(s)	764
AfiI	CCNNNNNNNGG	6 cut(s)	162, 175, 522, 1308, 1368, 1615
AgsI	TTSAA	6 cut(s)	72, 712, 1263, 1432, 1661, 1733
AjnI	CCWGG	4 cut(s)	747, 1014, 1567, 1663
AjuI	GAANNNNNNNTTGG	2 cut(s)	872, 904
AleI	CACNNNNGTG	3 cut(s)	24, 341, 437
Alw21I	GWGCWC	1 cut(s)	1672
Alw26I	GTCTC	3 cut(s)	148, 210, 1132
Alw44I	GTGCAC	1 cut(s)	1668
Aor13HI	TCCGGA	1 cut(s)	416
AoxI	GGCC	7 cut(s)	28, 177, 317, 429, 513, 1629, 1813
ApaLI	GTGCAC	1 cut(s)	1668
ApeKI	GCWGC	8 cut(s)	391, 518, 817, 820, 1196, 1385, 1736, 1805
ApoI	RAATTY	2 cut(s)	105, 1279
AspLEI	GCGC	2 cut(s)	361, 1011
AspS9I	GGNCC	4 cut(s)	166, 178, 318, 601
AsuC2I	CCSGG	2 cut(s)	116, 181
AsuHPI	GGTGA	2 cut(s)	328, 1583
AsuNHI	GCTAGC	1 cut(s)	614
AvaII	GGWCC	2 cut(s)	166, 601
BaeGI	GKGCMC	2 cut(s)	1672, 1764
BalI	TGGCCA	2 cut(s)	30, 431
BanI	GGYRCC	1 cut(s)	1759
BauI	CACGAG	1 cut(s)	766
BbrPI	CACGTG	1 cut(s)	26
BbsI	GAAGAC	2 cut(s)	181, 1581
Bbv12I	GWGCWC	1 cut(s)	1672
BbvI	GCAGC	8 cut(s)	403, 530, 807, 829, 1183, 1397, 1723, 1792
BccI	CCATC	5 cut(s)	602, 623, 628, 1139, 1766
BceAI	ACGGC	4 cut(s)	263, 283, 469, 1800
BciT130I	CCWGG	4 cut(s)	749, 1016, 1569, 1665
BclI	TGATCA	1 cut(s)	576
BcnI	CCSGG	2 cut(s)	116, 181
BcoDI	GTCTC	3 cut(s)	148, 210, 1132
BfaI	CTAG	3 cut(s)	615, 1142, 1691
BfmI	CTRYAG	1 cut(s)	1737
BfoI	RGCGCY	1 cut(s)	362
BglII	AGATCT	2 cut(s)	839, 961
Bme1390I	CCNGG	6 cut(s)	116, 181, 749, 1016, 1569, 1665
Bme18I	GGWCC	2 cut(s)	166, 601
BmgT120I	GGNCC	4 cut(s)	166, 178, 318, 601
BmiI	GGNNCC	3 cut(s)	167, 1761, 1777
BmrFI	CCNGG	6 cut(s)	116, 181, 749, 1016, 1569, 1665
BmsI	GCATC	3 cut(s)	694, 1020, 1312
BmtI	GCTAGC	1 cut(s)	618
BoxI	GACNNNNGTC	1 cut(s)	140
BpiI	GAAGAC	2 cut(s)	181, 1581
BpmI	CTGGAG	1 cut(s)	1197
Bpu10I	CCTNAGC	1 cut(s)	1833
BpuMI	CCSGG	2 cut(s)	116, 181
BsaAI	YACGTR	2 cut(s)	26, 762
BsaHI	GRCGYC	4 cut(s)	54, 159, 1222, 1525
BsaI	GGTCTC	1 cut(s)	148
BsaJI	CCNNGG	2 cut(s)	1567, 1632
BsaWI	WCCGGW	1 cut(s)	416
BsaXI	ACNNNNNCTCC	2 cut(s)	1212, 1242
Bsc4I	CCNNNNNNNGG	6 cut(s)	162, 175, 522, 1308, 1368, 1615
Bse1I	ACTGG	3 cut(s)	339, 586, 619
Bse3DI	GCAATG	3 cut(s)	277, 389, 422
BseAI	TCCGGA	1 cut(s)	416
BseBI	CCWGG	4 cut(s)	749, 1016, 1569, 1665
BseDI	CCNNGG	2 cut(s)	1567, 1632
BseGI	GGATG	6 cut(s)	559, 639, 643, 757, 1011, 1106
BseLI	CCNNNNNNNGG	6 cut(s)	162, 175, 522, 1308, 1368, 1615
BseMI	GCAATG	3 cut(s)	277, 389, 422
BseMII	CTCAG	2 cut(s)	220, 338
BseNI	ACTGG	3 cut(s)	339, 586, 619
BseRI	GAGGAG	3 cut(s)	192, 386, 389
BseSI	GKGCMC	2 cut(s)	1672, 1764
BseXI	GCAGC	8 cut(s)	403, 530, 807, 829, 1183, 1397, 1723, 1792
BseYI	CCCAGC	1 cut(s)	1764
BshFI	GGCC	7 cut(s)	30, 179, 319, 431, 515, 1631, 1815
BshNI	GGYRCC	1 cut(s)	1759
BsiHKAI	GWGCWC	1 cut(s)	1672
BsiSI	CCGG	7 cut(s)	12, 116, 156, 181, 417, 1046, 1702
BslFI	GGGAC	2 cut(s)	179, 278
BslI	CCNNNNNNNGG	6 cut(s)	162, 175, 522, 1308, 1368, 1615
BsmAI	GTCTC	3 cut(s)	148, 210, 1132
BsmFI	GGGAC	2 cut(s)	179, 278
BsmI	GAATGC	4 cut(s)	451, 667, 982, 1378
BsnI	GGCC	7 cut(s)	30, 179, 319, 431, 515, 1631, 1815
Bso31I	GGTCTC	1 cut(s)	148
Bsp1286I	GDGCHC	2 cut(s)	1672, 1764
Bsp13I	TCCGGA	1 cut(s)	416
Bsp143I	GATC	8 cut(s)	3, 48, 240, 576, 839, 961, 1380, 1610
BspACI	CCGC	4 cut(s)	276, 309, 516, 912
BspANI	GGCC	7 cut(s)	30, 179, 319, 431, 515, 1631, 1815
BspCNI	CTCAG	2 cut(s)	219, 339
BspEI	TCCGGA	1 cut(s)	416
BspHI	TCATGA	1 cut(s)	700
BspLI	GGNNCC	3 cut(s)	167, 1761, 1777
BspMAI	CTGCAG	1 cut(s)	1741
BspOI	GCTAGC	1 cut(s)	618
BspT107I	GGYRCC	1 cut(s)	1759
BspTNI	GGTCTC	1 cut(s)	148
BsrDI	GCAATG	3 cut(s)	277, 389, 422
BsrI	ACTGG	3 cut(s)	339, 586, 619
BssECI	CCNNGG	2 cut(s)	1567, 1632
BssMI	GATC	8 cut(s)	3, 48, 240, 576, 839, 961, 1380, 1610
BssNI	GRCGYC	4 cut(s)	54, 159, 1222, 1525
BssSI	CACGAG	1 cut(s)	766
BssT1I	CCWWGG	1 cut(s)	1632
Bst2BI	CACGAG	1 cut(s)	766
Bst2UI	CCWGG	4 cut(s)	749, 1016, 1569, 1665
Bst4CI	ACNGT	5 cut(s)	44, 223, 859, 1072, 1331
BstACI	GRCGYC	4 cut(s)	54, 159, 1222, 1525
BstAPI	GCANNNNNTGC	1 cut(s)	662
BstBAI	YACGTR	2 cut(s)	26, 762
BstC8I	GCNNGC	6 cut(s)	247, 429, 616, 815, 825, 1226
BstDEI	CTNAG	5 cut(s)	206, 347, 546, 836, 1833
BstF5I	GGATG	6 cut(s)	559, 639, 643, 757, 1011, 1106
BstH2I	RGCGCY	1 cut(s)	362
BstHHI	GCGC	2 cut(s)	361, 1011
BstKTI	GATC	8 cut(s)	6, 51, 243, 579, 842, 964, 1383, 1613
BstMAI	GTCTC	3 cut(s)	148, 210, 1132
BstMBI	GATC	8 cut(s)	3, 48, 240, 576, 839, 961, 1380, 1610
BstMWI	GCNNNNNNNGC	9 cut(s)	242, 388, 428, 662, 814, 1205, 1382, 1391, 1691
BstNI	CCWGG	4 cut(s)	749, 1016, 1569, 1665
BstNSI	RCATGY	1 cut(s)	827
BstPAI	GACNNNNGTC	1 cut(s)	140
BstSCI	CCNGG	6 cut(s)	114, 179, 747, 1014, 1567, 1663
BstSFI	CTRYAG	1 cut(s)	1737
BstSLI	GKGCMC	2 cut(s)	1672, 1764
BstSNI	TACGTA	1 cut(s)	762
BstV1I	GCAGC	8 cut(s)	403, 530, 807, 829, 1183, 1397, 1723, 1792
BstV2I	GAAGAC	2 cut(s)	181, 1581
BstX2I	RGATCY	2 cut(s)	839, 961
BstXI	CCANNNNNNTGG	2 cut(s)	26, 1772
BstYI	RGATCY	2 cut(s)	839, 961
BsuRI	GGCC	7 cut(s)	30, 179, 319, 431, 515, 1631, 1815
BtgZI	GCGATG	1 cut(s)	680
BtsCI	GGATG	6 cut(s)	559, 639, 643, 757, 1011, 1106
BtsIMutI	CAGTG	6 cut(s)	199, 219, 346, 444, 579, 784
Cac8I	GCNNGC	6 cut(s)	247, 429, 616, 815, 825, 1226
CciI	TCATGA	1 cut(s)	700
CfoI	GCGC	2 cut(s)	361, 1011
Cfr13I	GGNCC	4 cut(s)	166, 178, 318, 601
CseI	GACGC	3 cut(s)	148, 1230, 1533
CsiI	ACCWGGT	1 cut(s)	1663
Csp6I	GTAC	1 cut(s)	763
CviQI	GTAC	1 cut(s)	763
DdeI	CTNAG	5 cut(s)	206, 347, 546, 836, 1833
DpnI	GATC	8 cut(s)	5, 50, 242, 578, 841, 963, 1382, 1612
DpnII	GATC	8 cut(s)	3, 48, 240, 576, 839, 961, 1380, 1610
DraI	TTTAAA	1 cut(s)	1153
EaeI	YGGCCR	3 cut(s)	28, 429, 513
Eco105I	TACGTA	1 cut(s)	762
Eco130I	CCWWGG	1 cut(s)	1632
Eco31I	GGTCTC	1 cut(s)	148
Eco47I	GGWCC	2 cut(s)	166, 601
Eco57I	CTGAAG	3 cut(s)	175, 420, 864
Eco72I	CACGTG	1 cut(s)	26
EcoO109I	RGGNCCY	2 cut(s)	166, 601
EcoRII	CCWGG	4 cut(s)	747, 1014, 1567, 1663
EcoT14I	CCWWGG	1 cut(s)	1632
EcoT22I	ATGCAT	4 cut(s)	732, 889, 1171, 1548
ErhI	CCWWGG	1 cut(s)	1632
FaqI	GGGAC	2 cut(s)	179, 278
FbaI	TGATCA	1 cut(s)	576
FblI	GTMKAC	2 cut(s)	57, 1317
FokI	GGATG	6 cut(s)	566, 646, 650, 764, 998, 1113
FspBI	CTAG	3 cut(s)	615, 1142, 1691
GlaI	GCGC	2 cut(s)	360, 1010
GsaI	CCCAGC	1 cut(s)	1768
GsuI	CTGGAG	1 cut(s)	1197
HaeII	RGCGCY	1 cut(s)	362
HaeIII	GGCC	7 cut(s)	30, 179, 319, 431, 515, 1631, 1815
HapII	CCGG	7 cut(s)	12, 116, 156, 181, 417, 1046, 1702
HgaI	GACGC	3 cut(s)	148, 1230, 1533
HhaI	GCGC	2 cut(s)	361, 1011
Hin1I	GRCGYC	4 cut(s)	54, 159, 1222, 1525
Hin6I	GCGC	2 cut(s)	359, 1009
HinP1I	GCGC	2 cut(s)	359, 1009
HincII	GTYRAC	1 cut(s)	1623
HindII	GTYRAC	1 cut(s)	1623
HinfI	GANTC	8 cut(s)	136, 186, 742, 1259, 1358, 1550, 1705, 1746
HpaII	CCGG	7 cut(s)	12, 116, 156, 181, 417, 1046, 1702
HphI	GGTGA	2 cut(s)	328, 1583
Hpy166II	GTNNAC	9 cut(s)	58, 330, 567, 759, 765, 862, 1318, 1623, 1670
Hpy188I	TCNGA	2 cut(s)	844, 959
Hpy188III	TCNNGA	3 cut(s)	293, 417, 701
Hpy8I	GTNNAC	9 cut(s)	58, 330, 567, 759, 765, 862, 1318, 1623, 1670
Hpy99I	CGWCG	5 cut(s)	56, 128, 164, 499, 574
HpyAV	CCTTC	3 cut(s)	343, 520, 1514
HpyCH4III	ACNGT	5 cut(s)	44, 223, 859, 1072, 1331
HpyCH4IV	ACGT	4 cut(s)	25, 54, 761, 1187
HpyF10VI	GCNNNNNNNGC	9 cut(s)	242, 388, 428, 662, 814, 1205, 1382, 1391, 1691
HpyF3I	CTNAG	5 cut(s)	206, 347, 546, 836, 1833
HpySE526I	ACGT	4 cut(s)	25, 54, 761, 1187
Hsp92I	GRCGYC	4 cut(s)	54, 159, 1222, 1525
HspAI	GCGC	2 cut(s)	359, 1009
Kpn2I	TCCGGA	1 cut(s)	416
Ksp22I	TGATCA	1 cut(s)	576
Kzo9I	GATC	8 cut(s)	3, 48, 240, 576, 839, 961, 1380, 1610
LmnI	GCTCC	5 cut(s)	419, 611, 1178, 1213, 1233
Lsp1109I	GCAGC	8 cut(s)	403, 530, 807, 829, 1183, 1397, 1723, 1792
LweI	GCATC	3 cut(s)	694, 1020, 1312
MabI	ACCWGGT	1 cut(s)	1663
MaeI	CTAG	3 cut(s)	615, 1142, 1691
MaeII	ACGT	4 cut(s)	25, 54, 761, 1187
MaeIII	GTNAC	2 cut(s)	293, 892
MalI	GATC	8 cut(s)	5, 50, 242, 578, 841, 963, 1382, 1612
MboI	GATC	8 cut(s)	3, 48, 240, 576, 839, 961, 1380, 1610
MboII	GAAGA	7 cut(s)	60, 68, 181, 471, 1121, 1460, 1586
MfeI	CAATTG	1 cut(s)	405
MflI	RGATCY	2 cut(s)	839, 961
MhlI	GDGCHC	2 cut(s)	1672, 1764
MlsI	TGGCCA	2 cut(s)	30, 431
MluCI	AATT	7 cut(s)	105, 405, 644, 918, 1279, 1419, 1674
MluNI	TGGCCA	2 cut(s)	30, 431
MlyI	GAGTC	5 cut(s)	130, 195, 1544, 1699, 1740
MmeI	TCCRAC	2 cut(s)	1191, 1255
Mox20I	TGGCCA	2 cut(s)	30, 431
Mph1103I	ATGCAT	4 cut(s)	732, 889, 1171, 1548
MroI	TCCGGA	1 cut(s)	416
MscI	TGGCCA	2 cut(s)	30, 431
MslI	CAYNNNNRTG	4 cut(s)	24, 341, 437, 1404
Msp20I	TGGCCA	2 cut(s)	30, 431
MspA1I	CMGCKG	1 cut(s)	820
MspI	CCGG	7 cut(s)	12, 116, 156, 181, 417, 1046, 1702
MspR9I	CCNGG	6 cut(s)	116, 181, 749, 1016, 1569, 1665
MunI	CAATTG	1 cut(s)	405
Mva1269I	GAATGC	4 cut(s)	451, 667, 982, 1378
MvaI	CCWGG	4 cut(s)	749, 1016, 1569, 1665
MwoI	GCNNNNNNNGC	9 cut(s)	242, 388, 428, 662, 814, 1205, 1382, 1391, 1691
NciI	CCSGG	2 cut(s)	116, 181
NdeII	GATC	8 cut(s)	3, 48, 240, 576, 839, 961, 1380, 1610
NheI	GCTAGC	1 cut(s)	614
NlaIV	GGNNCC	3 cut(s)	167, 1761, 1777
NmeAIII	GCCGAG	1 cut(s)	125
NmuCI	GTSAC	1 cut(s)	293
NsiI	ATGCAT	4 cut(s)	732, 889, 1171, 1548
NspI	RCATGY	1 cut(s)	827
OliI	CACNNNNGTG	3 cut(s)	24, 341, 437
PaeI	GCATGC	1 cut(s)	827
PagI	TCATGA	1 cut(s)	700
PcsI	WCGNNNNNNNCGW	1 cut(s)	569
PctI	GAATGC	4 cut(s)	451, 667, 982, 1378
PfeI	GAWTC	3 cut(s)	742, 1259, 1358
PflFI	GACNNNGTC	1 cut(s)	122
PfoI	TCCNGGA	1 cut(s)	1014
PleI	GAGTC	5 cut(s)	130, 194, 1544, 1699, 1740
PmaCI	CACGTG	1 cut(s)	26
PmlI	CACGTG	1 cut(s)	26
PpsI	GAGTC	5 cut(s)	130, 194, 1544, 1699, 1740
Ppu21I	YACGTR	2 cut(s)	26, 762
PpuMI	RGGWCCY	2 cut(s)	166, 601
PshAI	GACNNNNGTC	1 cut(s)	140
Psp5II	RGGWCCY	2 cut(s)	166, 601
Psp6I	CCWGG	4 cut(s)	747, 1014, 1567, 1663
PspCI	CACGTG	1 cut(s)	26
PspFI	CCCAGC	1 cut(s)	1764
PspGI	CCWGG	4 cut(s)	747, 1014, 1567, 1663
PspN4I	GGNNCC	3 cut(s)	167, 1761, 1777
PspPI	GGNCC	4 cut(s)	166, 178, 318, 601
PspPPI	RGGWCCY	2 cut(s)	166, 601
PstI	CTGCAG	1 cut(s)	1741
PsuI	RGATCY	2 cut(s)	839, 961
PsyI	GACNNNGTC	1 cut(s)	122
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	1 cut(s)	764
RsaNI	GTAC	1 cut(s)	763
RseI	CAYNNNNRTG	4 cut(s)	24, 341, 437, 1404
Sau3AI	GATC	8 cut(s)	3, 48, 240, 576, 839, 961, 1380, 1610
Sau96I	GGNCC	4 cut(s)	166, 178, 318, 601
SchI	GAGTC	5 cut(s)	130, 195, 1544, 1699, 1740
ScrFI	CCNGG	6 cut(s)	116, 181, 749, 1016, 1569, 1665
SduI	GDGCHC	2 cut(s)	1672, 1764
SexAI	ACCWGGT	1 cut(s)	1663
SfaNI	GCATC	3 cut(s)	694, 1020, 1312
SfcI	CTRYAG	1 cut(s)	1737
SinI	GGWCC	2 cut(s)	166, 601
SmiMI	CAYNNNNRTG	4 cut(s)	24, 341, 437, 1404
SnaBI	TACGTA	1 cut(s)	762
SphI	GCATGC	1 cut(s)	827
Sse9I	AATT	7 cut(s)	105, 405, 644, 918, 1279, 1419, 1674
SsiI	CCGC	4 cut(s)	276, 309, 516, 912
SspI	AATATT	2 cut(s)	984, 1532
SspMI	CTAG	3 cut(s)	615, 1142, 1691
StyD4I	CCNGG	6 cut(s)	114, 179, 747, 1014, 1567, 1663
StyI	CCWWGG	1 cut(s)	1632
TaaI	ACNGT	5 cut(s)	44, 223, 859, 1072, 1331
TaiI	ACGT	4 cut(s)	28, 57, 764, 1190
TaqI	TCGA	4 cut(s)	51, 99, 443, 1793
TasI	AATT	7 cut(s)	105, 405, 644, 918, 1279, 1419, 1674
TauI	GCSGC	2 cut(s)	278, 518
TfiI	GAWTC	3 cut(s)	742, 1259, 1358
TscAI	CASTG	6 cut(s)	199, 226, 346, 444, 586, 784
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	8 cut(s)	391, 518, 817, 820, 1196, 1385, 1736, 1805
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	3 cut(s)	552, 654, 939
TspGWI	ACGGA	2 cut(s)	943, 1351
TspRI	CASTG	6 cut(s)	199, 226, 346, 444, 586, 784
Tth111I	GACNNNGTC	1 cut(s)	122
VneI	GTGCAC	1 cut(s)	1668
VpaK11BI	GGWCC	2 cut(s)	166, 601
XapI	RAATTY	2 cut(s)	105, 1279
XceI	RCATGY	1 cut(s)	827
XcmI	CCANNNNNNNNNTGG	2 cut(s)	136, 626
XmiI	GTMKAC	2 cut(s)	57, 1317
XspI	CTAG	3 cut(s)	615, 1142, 1691
ZraI	GACGTC	1 cut(s)	55
Zsp2I	ATGCAT	4 cut(s)	732, 889, 1171, 1548

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.