Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005913.1

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Forward (+)

83953 .. 85401

Gene Structure 1449 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005913.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

atgctcctgaggaatagaaagcgctatctcctctgctgcacaggtagctccagtgtagatagtgccaaaaatttcttccccatacacatcggagctacatctgtcatgcgcttgtgcccgctaagctccaccaccgtctttccatacactgacccgaaatcggcgttgaatttgagcccatttgctttctctagcccgccaccgttcccaaacctgcctcttacggtggcggctaaccgttacgccgctcagctgcagctatgctgcctccaacgccccacctcatactctttagcccgaaccatccacgcccacatgatcacttccggcttccacccacgtggccatatcctaaaccgtttgatcgatgtctaccgcaaatcttcaaatcttcgctacgcactccacctgttcgaccaaattcccaacccggacatcgtcgccagaacaactctggtttcggcgtattccggcgtcggggacgtcacgctggcccggacagtgttcagtgaaactccgtccagcatgagagacattgtcagctacaatgccatgatcgcaggctactctcataatagggacggcaatgccgccgttgagctgtttcgggaaatgatgcgaggcggttttcggcccgatgagtttaccttcaccagtgtgctgagtggtctggcgcttatagtggaggaggagaagcaatgccagcagctgcattgtgcaattgttaagtctggagcattgttgggcactttggtgtcgaatgcgttggtgtctgtgtatgttaagtgtgcttcttcaccgttggtgtctttgtcgtcggtggtggtggctgcggcgaggaaggtgtttgatgaaatggctaagagagatgagctgtcgtggacgacgatgattactggttatgtgaggaacgaggaccttgatggagctcggcagttgctagatggaatggatgaaaaattggaagtggcgtggaatgcaatgatttcgggttatgtgcatcatggtttttgtcatgaggcattgaaattgttcggggaaatgcatttaatggggattcgacaggatgagtttacatacacgagtgttatcagtgcttgtgctaacgatggcttatttaagcatgggaagcagctgcatgcttacatactaagatctgaagcaaaaccgactgtggacttttct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

395

Amino Acids

43.68

Weight (kDa)

8.47

Isoelectric Point (pI)

36.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	486
Acc36I	ACCTGC	1 cut(s)	222
AccBSI	CCGCTC	1 cut(s)	248
AccI	GTMKAC	1 cut(s)	372
AciI	CCGC	8 cut(s)	119, 197, 230, 246, 376, 591, 624, 833
AcoI	YGGCCR	1 cut(s)	343
AcsI	RAATTY	3 cut(s)	70, 169, 420
AcuI	CTGAAG	1 cut(s)	1179
AcvI	CACGTG	1 cut(s)	341
AcyI	GRCGYC	2 cut(s)	474, 483
AfeI	AGCGCT	1 cut(s)	23
AfiI	CCNNNNNNNGG	2 cut(s)	160, 477
AgsI	TTSAA	3 cut(s)	169, 387, 1027
AjuI	GAANNNNNNNTTGG	2 cut(s)	59, 91
AleI	CACNNNNGTG	3 cut(s)	339, 656, 752
Alw21I	GWGCWC	1 cut(s)	931
Alw26I	GTCTC	1 cut(s)	525
AlwNI	CAGNNNCTG	1 cut(s)	709
Aor51HI	AGCGCT	1 cut(s)	23
AoxI	GGCC	3 cut(s)	343, 492, 632
ApeKI	GCWGC	9 cut(s)	36, 253, 256, 264, 706, 709, 830, 1132, 1135
ApoI	RAATTY	3 cut(s)	70, 169, 420
Asp700I	GAANNNNTTC	1 cut(s)	1031
AspLEI	GCGC	3 cut(s)	24, 111, 676
AspS9I	GGNCC	3 cut(s)	493, 633, 916
AsuC2I	CCSGG	2 cut(s)	431, 496
AsuHPI	GGTGA	2 cut(s)	643, 789
AvaII	GGWCC	1 cut(s)	916
AxyI	CCTNAGG	1 cut(s)	8
BaeGI	GKGCMC	2 cut(s)	119, 749
BalI	TGGCCA	1 cut(s)	345
BanII	GRGCYC	2 cut(s)	179, 931
BauI	CACGAG	1 cut(s)	1081
BbrPI	CACGTG	1 cut(s)	341
Bbv12I	GWGCWC	1 cut(s)	931
BbvI	GCAGC	9 cut(s)	23, 240, 251, 268, 696, 718, 817, 1122, 1144
BccI	CCATC	4 cut(s)	311, 917, 938, 1103
BceAI	ACGGC	2 cut(s)	578, 598
BcgI	CGANNNNNNTGC	2 cut(s)	969, 1003
BclI	TGATCA	1 cut(s)	318
BcnI	CCSGG	2 cut(s)	431, 496
BcoDI	GTCTC	1 cut(s)	525
BfaI	CTAG	2 cut(s)	192, 941
BfmI	CTRYAG	1 cut(s)	254
BfoI	RGCGCY	2 cut(s)	25, 677
BfuAI	ACCTGC	1 cut(s)	222
BglII	AGATCT	1 cut(s)	1154
BlpI	GCTNAGC	2 cut(s)	122, 249
Bme1390I	CCNGG	2 cut(s)	431, 496
Bme18I	GGWCC	1 cut(s)	916
BmgT120I	GGNCC	3 cut(s)	493, 633, 916
BmrFI	CCNGG	2 cut(s)	431, 496
BmsI	GCATC	2 cut(s)	606, 1009
BpmI	CTGGAG	2 cut(s)	34, 753
Bpu1102I	GCTNAGC	2 cut(s)	122, 249
BpuMI	CCSGG	2 cut(s)	431, 496
Bsa29I	ATCGAT	1 cut(s)	366
BsaAI	YACGTR	1 cut(s)	341
BsaHI	GRCGYC	2 cut(s)	474, 483
Bsc4I	CCNNNNNNNGG	2 cut(s)	160, 477
Bse1I	ACTGG	3 cut(s)	51, 654, 901
Bse21I	CCTNAGG	1 cut(s)	8
Bse3DI	GCAATG	3 cut(s)	592, 704, 987
BseCI	ATCGAT	1 cut(s)	366
BseGI	GGATG	3 cut(s)	303, 958, 1072
BseLI	CCNNNNNNNGG	2 cut(s)	160, 477
BseMI	GCAATG	3 cut(s)	592, 704, 987
BseMII	CTCAG	2 cut(s)	263, 653
BseNI	ACTGG	3 cut(s)	51, 654, 901
BseRI	GAGGAG	3 cut(s)	20, 701, 704
BseSI	GKGCMC	2 cut(s)	119, 749
BseXI	GCAGC	9 cut(s)	23, 240, 251, 268, 696, 718, 817, 1122, 1144
BsgI	GTGCAG	1 cut(s)	22
BshFI	GGCC	3 cut(s)	345, 494, 634
BshVI	ATCGAT	1 cut(s)	366
BsiHKAI	GWGCWC	1 cut(s)	931
BsiSI	CCGG	4 cut(s)	327, 431, 471, 496
BslFI	GGGAC	2 cut(s)	494, 593
BslI	CCNNNNNNNGG	2 cut(s)	160, 477
BsmAI	GTCTC	1 cut(s)	525
BsmFI	GGGAC	2 cut(s)	494, 593
BsmI	GAATGC	2 cut(s)	766, 982
BsnI	GGCC	3 cut(s)	345, 494, 634
Bsp1286I	GDGCHC	4 cut(s)	119, 179, 749, 931
Bsp143I	GATC	4 cut(s)	318, 363, 555, 1154
Bsp1720I	GCTNAGC	2 cut(s)	122, 249
BspACI	CCGC	8 cut(s)	119, 197, 230, 246, 376, 591, 624, 833
BspANI	GGCC	3 cut(s)	345, 494, 634
BspCNI	CTCAG	2 cut(s)	262, 654
BspDI	ATCGAT	1 cut(s)	366
BspHI	TCATGA	1 cut(s)	1015
BspMAI	CTGCAG	1 cut(s)	258
BspMI	ACCTGC	1 cut(s)	222
BsrBI	CCGCTC	1 cut(s)	248
BsrDI	GCAATG	3 cut(s)	592, 704, 987
BsrI	ACTGG	3 cut(s)	51, 654, 901
BssMI	GATC	4 cut(s)	318, 363, 555, 1154
BssNI	GRCGYC	2 cut(s)	474, 483
BssSI	CACGAG	1 cut(s)	1081
Bst2BI	CACGAG	1 cut(s)	1081
Bst4CI	ACNGT	8 cut(s)	136, 204, 226, 239, 359, 502, 801, 1174
BstACI	GRCGYC	2 cut(s)	474, 483
BstBAI	YACGTR	1 cut(s)	341
BstC8I	GCNNGC	6 cut(s)	119, 197, 492, 562, 704, 1140
BstDEI	CTNAG	6 cut(s)	8, 122, 249, 662, 861, 1151
BstF5I	GGATG	3 cut(s)	303, 958, 1072
BstH2I	RGCGCY	2 cut(s)	25, 677
BstHHI	GCGC	3 cut(s)	24, 111, 676
BstKTI	GATC	4 cut(s)	321, 366, 558, 1157
BstMAI	GTCTC	1 cut(s)	525
BstMBI	GATC	4 cut(s)	318, 363, 555, 1154
BstMWI	GCNNNNNNNGC	7 cut(s)	45, 123, 273, 557, 703, 977, 1129
BstNSI	RCATGY	1 cut(s)	1142
BstSCI	CCNGG	2 cut(s)	429, 494
BstSFI	CTRYAG	1 cut(s)	254
BstSLI	GKGCMC	2 cut(s)	119, 749
BstV1I	GCAGC	9 cut(s)	23, 240, 251, 268, 696, 718, 817, 1122, 1144
BstX2I	RGATCY	1 cut(s)	1154
BstXI	CCANNNNNNTGG	1 cut(s)	341
BstYI	RGATCY	1 cut(s)	1154
Bsu15I	ATCGAT	1 cut(s)	366
Bsu36I	CCTNAGG	1 cut(s)	8
BsuRI	GGCC	3 cut(s)	345, 494, 634
BsuTUI	ATCGAT	1 cut(s)	366
BtsCI	GGATG	3 cut(s)	303, 958, 1072
BtsIMutI	CAGTG	6 cut(s)	58, 147, 507, 514, 661, 1099
BveI	ACCTGC	1 cut(s)	222
Cac8I	GCNNGC	6 cut(s)	119, 197, 492, 562, 704, 1140
CaiI	CAGNNNCTG	1 cut(s)	709
CciI	TCATGA	1 cut(s)	1015
CfoI	GCGC	3 cut(s)	24, 111, 676
Cfr13I	GGNCC	3 cut(s)	493, 633, 916
ClaI	ATCGAT	1 cut(s)	366
CseI	GACGC	1 cut(s)	463
CviAII	CATG	8 cut(s)	106, 316, 526, 553, 1004, 1016, 1124, 1139
DdeI	CTNAG	6 cut(s)	8, 122, 249, 662, 861, 1151
DpnI	GATC	4 cut(s)	320, 365, 557, 1156
DpnII	GATC	4 cut(s)	318, 363, 555, 1154
EaeI	YGGCCR	1 cut(s)	343
Ecl136II	GAGCTC	1 cut(s)	929
Eco24I	GRGCYC	2 cut(s)	179, 931
Eco47I	GGWCC	1 cut(s)	916
Eco47III	AGCGCT	1 cut(s)	23
Eco53kI	GAGCTC	1 cut(s)	929
Eco57I	CTGAAG	1 cut(s)	1179
Eco72I	CACGTG	1 cut(s)	341
Eco81I	CCTNAGG	1 cut(s)	8
EcoICRI	GAGCTC	1 cut(s)	929
EcoO109I	RGGNCCY	1 cut(s)	916
EcoT22I	ATGCAT	1 cut(s)	1047
EcoT38I	GRGCYC	2 cut(s)	179, 931
FaeI	CATG	8 cut(s)	109, 319, 529, 556, 1007, 1019, 1127, 1142
FaqI	GGGAC	2 cut(s)	494, 593
FatI	CATG	8 cut(s)	105, 315, 525, 552, 1003, 1015, 1123, 1138
FauI	CCCGC	2 cut(s)	126, 204
FbaI	TGATCA	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	372
FokI	GGATG	3 cut(s)	290, 965, 1079
FriOI	GRGCYC	2 cut(s)	179, 931
FspBI	CTAG	2 cut(s)	192, 941
GlaI	GCGC	3 cut(s)	23, 110, 675
GsuI	CTGGAG	2 cut(s)	34, 753
HaeII	RGCGCY	2 cut(s)	25, 677
HaeIII	GGCC	3 cut(s)	345, 494, 634
HapII	CCGG	4 cut(s)	327, 431, 471, 496
HgaI	GACGC	1 cut(s)	463
HhaI	GCGC	3 cut(s)	24, 111, 676
Hin1I	GRCGYC	2 cut(s)	474, 483
Hin1II	CATG	8 cut(s)	109, 319, 529, 556, 1007, 1019, 1127, 1142
Hin6I	GCGC	3 cut(s)	22, 109, 674
HinP1I	GCGC	3 cut(s)	22, 109, 674
HinfI	GANTC	1 cut(s)	1057
HpaII	CCGG	4 cut(s)	327, 431, 471, 496
HphI	GGTGA	2 cut(s)	643, 789
Hpy166II	GTNNAC	5 cut(s)	373, 645, 882, 1074, 1177
Hpy188I	TCNGA	2 cut(s)	92, 1159
Hpy188III	TCNNGA	4 cut(s)	7, 608, 732, 1016
Hpy8I	GTNNAC	5 cut(s)	373, 645, 882, 1074, 1177
Hpy99I	CGWCG	4 cut(s)	443, 479, 820, 889
HpyAV	CCTTC	2 cut(s)	658, 835
HpyCH4III	ACNGT	8 cut(s)	136, 204, 226, 239, 359, 502, 801, 1174
HpyCH4IV	ACGT	2 cut(s)	340, 483
HpyCH4V	TGCA	8 cut(s)	39, 256, 712, 719, 980, 1000, 1045, 1138
HpyF10VI	GCNNNNNNNGC	7 cut(s)	45, 123, 273, 557, 703, 977, 1129
HpyF3I	CTNAG	6 cut(s)	8, 122, 249, 662, 861, 1151
HpySE526I	ACGT	2 cut(s)	340, 483
Hsp92I	GRCGYC	2 cut(s)	474, 483
Hsp92II	CATG	8 cut(s)	109, 319, 529, 556, 1007, 1019, 1127, 1142
HspAI	GCGC	3 cut(s)	22, 109, 674
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	4 cut(s)	318, 363, 555, 1154
LmnI	GCTCC	6 cut(s)	9, 53, 92, 131, 734, 926
Lsp1109I	GCAGC	9 cut(s)	23, 240, 251, 268, 696, 718, 817, 1122, 1144
LweI	GCATC	2 cut(s)	606, 1009
MaeI	CTAG	2 cut(s)	192, 941
MaeII	ACGT	2 cut(s)	340, 483
MaeIII	GTNAC	2 cut(s)	239, 484
MalI	GATC	4 cut(s)	320, 365, 557, 1156
MbiI	CCGCTC	1 cut(s)	248
MboI	GATC	4 cut(s)	318, 363, 555, 1154
MboII	GAAGA	4 cut(s)	67, 375, 383, 786
MfeI	CAATTG	1 cut(s)	720
MflI	RGATCY	1 cut(s)	1154
MhlI	GDGCHC	4 cut(s)	119, 179, 749, 931
MlsI	TGGCCA	1 cut(s)	345
MluCI	AATT	6 cut(s)	70, 169, 420, 720, 959, 1028
MluNI	TGGCCA	1 cut(s)	345
MmeI	TCCRAC	1 cut(s)	295
Mox20I	TGGCCA	1 cut(s)	345
Mph1103I	ATGCAT	1 cut(s)	1047
MroXI	GAANNNNTTC	1 cut(s)	1031
MscI	TGGCCA	1 cut(s)	345
MseI	TTAA	4 cut(s)	726, 783, 1049, 1119
MslI	CAYNNNNRTG	3 cut(s)	339, 656, 752
Msp20I	TGGCCA	1 cut(s)	345
MspA1I	CMGCKG	3 cut(s)	253, 709, 1135
MspI	CCGG	4 cut(s)	327, 431, 471, 496
MspR9I	CCNGG	2 cut(s)	431, 496
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	2 cut(s)	766, 982
MwoI	GCNNNNNNNGC	7 cut(s)	45, 123, 273, 557, 703, 977, 1129
NciI	CCSGG	2 cut(s)	431, 496
NdeII	GATC	4 cut(s)	318, 363, 555, 1154
NlaIII	CATG	8 cut(s)	109, 319, 529, 556, 1007, 1019, 1127, 1142
NmeAIII	GCCGAG	1 cut(s)	910
NmuCI	GTSAC	1 cut(s)	484
NsiI	ATGCAT	1 cut(s)	1047
NspI	RCATGY	1 cut(s)	1142
OliI	CACNNNNGTG	3 cut(s)	339, 656, 752
PaeI	GCATGC	1 cut(s)	1142
PagI	TCATGA	1 cut(s)	1015
PcsI	WCGNNNNNNNCGW	1 cut(s)	884
PctI	GAATGC	2 cut(s)	766, 982
PdmI	GAANNNNTTC	1 cut(s)	1031
PfeI	GAWTC	1 cut(s)	1057
PflFI	GACNNNGTC	2 cut(s)	437, 536
PmaCI	CACGTG	1 cut(s)	341
PmlI	CACGTG	1 cut(s)	341
Ppu21I	YACGTR	1 cut(s)	341
PpuMI	RGGWCCY	1 cut(s)	916
Psp124BI	GAGCTC	1 cut(s)	931
Psp5II	RGGWCCY	1 cut(s)	916
PspCI	CACGTG	1 cut(s)	341
PspPI	GGNCC	3 cut(s)	493, 633, 916
PspPPI	RGGWCCY	1 cut(s)	916
PstI	CTGCAG	1 cut(s)	258
PstNI	CAGNNNCTG	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	1154
PsyI	GACNNNGTC	2 cut(s)	437, 536
PvuII	CAGCTG	3 cut(s)	253, 709, 1135
RseI	CAYNNNNRTG	3 cut(s)	339, 656, 752
SacI	GAGCTC	1 cut(s)	931
SaqAI	TTAA	4 cut(s)	726, 783, 1049, 1119
Sau3AI	GATC	4 cut(s)	318, 363, 555, 1154
Sau96I	GGNCC	3 cut(s)	493, 633, 916
ScrFI	CCNGG	2 cut(s)	431, 496
SduI	GDGCHC	4 cut(s)	119, 179, 749, 931
SfaNI	GCATC	2 cut(s)	606, 1009
SfcI	CTRYAG	1 cut(s)	254
SinI	GGWCC	1 cut(s)	916
SmiMI	CAYNNNNRTG	3 cut(s)	339, 656, 752
SphI	GCATGC	1 cut(s)	1142
Sse9I	AATT	6 cut(s)	70, 169, 420, 720, 959, 1028
SsiI	CCGC	8 cut(s)	119, 197, 230, 246, 376, 591, 624, 833
SspMI	CTAG	2 cut(s)	192, 941
SstI	GAGCTC	1 cut(s)	931
StyD4I	CCNGG	2 cut(s)	429, 494
TaaI	ACNGT	8 cut(s)	136, 204, 226, 239, 359, 502, 801, 1174
TaiI	ACGT	2 cut(s)	343, 486
TaqI	TCGA	4 cut(s)	366, 414, 758, 1060
TasI	AATT	6 cut(s)	70, 169, 420, 720, 959, 1028
TauI	GCSGC	4 cut(s)	233, 248, 593, 836
TfiI	GAWTC	1 cut(s)	1057
Tru1I	TTAA	4 cut(s)	726, 783, 1049, 1119
Tru9I	TTAA	4 cut(s)	726, 783, 1049, 1119
TscAI	CASTG	6 cut(s)	58, 154, 507, 514, 661, 1099
TseFI	GTSAC	1 cut(s)	484
TseI	GCWGC	9 cut(s)	36, 253, 256, 264, 706, 709, 830, 1132, 1135
Tsp45I	GTSAC	1 cut(s)	484
TspDTI	ATGAA	2 cut(s)	867, 969
TspGWI	ACGGA	1 cut(s)	507
TspRI	CASTG	6 cut(s)	58, 154, 507, 514, 661, 1099
Tth111I	GACNNNGTC	2 cut(s)	437, 536
VpaK11BI	GGWCC	1 cut(s)	916
XapI	RAATTY	3 cut(s)	70, 169, 420
XceI	RCATGY	1 cut(s)	1142
XcmI	CCANNNNNNNNNTGG	1 cut(s)	451
XmiI	GTMKAC	1 cut(s)	372
XmnI	GAANNNNTTC	1 cut(s)	1031
XspI	CTAG	2 cut(s)	192, 941
ZraI	GACGTC	1 cut(s)	484
Zsp2I	ATGCAT	1 cut(s)	1047

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.