Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr17

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Reverse (-)

32546944 .. 32550168

Gene Structure 3225 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD17G1265000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2280 bp

ATGATCGCTTCTGGGTTCAGTCCACGTGGCCATATTCTTAACCGTTTGATTGATATTTACTGCAAATCTTCAAATATTAGCTACGCCCGCCAACTGTTTGATAAAATTCCCAAACCAGACATTGTTGCTCGAACGACCTTGGTTAAGGCATACTCTGTCATTGGAAATCTAACGCTGGCCCGTAAAATATTCGATGAAACCCCGTTGAGCATGCGAGACACTGTTTCTTACAATGCCATGATCACTGGCTATTCCCATAACAACGATGGCTATGCCGCTGTTAGACTGTTTTGCGACATGAGGCGAGGGGATGTTAGGCCTGACGATTTCACATTCACGTGTGTACTTAGTGCCTCGGCGCAGATAGTGGATGACGAGAAGCAGTGCAAGCAACTGCATTGTGGAATAGTTAAGTCTGGAACGGCGTTTGCCAGTTCAGTGTGGAATGCGCTATTATCTGTTTATGTTAAATGTGCTTCTTCGCCATTGGTATCATCGTCATCGTTGATGAGGGAAGCTAGGAAATTGTTCGATGAGATGCCTAAGAGAGATGAACTGTCGTGGACGACAATGATTACTGGGTATGTAAGGAATGAAGACCTTGATGCAGCTCGTGAGTTGCTGGACGGGATGGATGAAAAGTTGGAAGTTGCATGGAATGCCATGATTTCAGGTTATGTGCGTCATGATTCTTTCCAAGAAGCATTGTTGTTGTTTAGGAAAATGCGTTTGCTGGGGATTCGTCAGGATGAGTTTACATACACAAGTGTTATCAGTGCTTGTGCTAATATTGGATTATTTCAGTTGGGGAAGCAGGTGCATGCTTACATACTAAGAACCGAAGCAAAGCCCACTCTGGATTTTTCATTATCAGTGAGCAATGCATTGATTACACTATATTATAAATGTGATAAACTTGATGAAGCACGTTATATTTTTAATAATATGCCTGTTAGAGATCTTGTTTCTTGGAATGCAATCCTGTCAGGATATGTAAATGCAGGGCGCATCCAAGAAGCAAAATCCTTTTTCAAGGAAATGCCAGAGAGGAGCATTCTAACATGGACTGTGATAATATCTGGTTTAGCTCAAAACGGATTTGGAGAAGAGGCTATGAAGCTATTCAACCAAATGAGATTAGAGGGTTGTGAACCATGTGATTATGCATTTGCTGGAGCTATTACTTCTTGTGCTGCGCTGGGAGCATTGAAGCATGGACGCCAGCTCCACGCTCAACTGATTAGGTTGGGGCATGATTCAAGCCTTTCAGCTGCAAATGCACTTATCACGATGTATGGTAGATGCGGAGTTGTTGAGGATGCAAACACTCTGTTCCTCACGATGTCTTATATTGATTCCGTGTCTTGGAATGCTATGATTGCAGCTCTCGCACAGCATGGATATGGTGTCCAAGCAATAGGACTTTTTGAGCAAATGTTGAAGGAGGATATGCTACCAGATAGAGTAACTTTCCTCATCATTCTCTCAGCTTGTAGTCATGCTGGTTTAGTCAAAGAAGGGCGCCATTATTTTAGTTCAATGCGTGATTCTTATGGTATTAGCCCCGATGAAGAACATTATGCTCGCATGATTGATCTGTTGTGTCGGTGCGGGGAGTTCACAGAAGCGAAGGACTTGATTGAATCAATGCCTTTTGAGCCAGGTGCACCAATATGGGAGGCTCTTCTTGCTGGTTGCAAGACTCATGGGAATCTGGATTTAGGAATTCAAGCTGCAGAACGACTCTTGGAGTTGGTGCCACAGCATGATGGAACCTACGTACTGTTGTCAAACTTGTATGCCACCGCAGGCTATTGGGATGATGTGGCTAAGGTACGGAAACTAATGAGAGATAGAGGGGTTAAGAAAGAGCCTGGTTGTAGTTGGATTGACGTTGAAAACATGGTCCACGTCTTCTTGGTTGATGACACAAAGCACCCTGAGGTGCAAGCAGTGTACAAGTATCTGGAGCAACTAGGACTTGAAATGAGGAAGTTAGGATATGTACCGGACACAAATTATGTGTTGCATGATATGGAGTCCGAACATAAGGAGTATGCCATTTCCACTCACAGTGAGAAGCTTGCAGTTGCATTTGGGCTCATGAAGCTTCCTCCTGGACACACAATCAGAGTATTTAAGAATCTTAGGATTTGTGGGGATTGCCATAATGCATTCAAGTTTATATCAAGAGTGGTAGGGAGAGAAATAATTGTGAGAGATGGGAAGAGGTTTCATCATTTTAGGAACGGTGAATGCTCTTGTGGCGATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

760

Amino Acids

85.4

Weight (kDa)

6.31

Isoelectric Point (pI)

32.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	72 - 118	5.9e-13	PPR repeat family
PPR_2	PF13041	217 - 263	7.6e-12	PPR repeat family
PPR	PF01535	217 - 247	1.5e-07	PPR repeat
PPR_2	PF13041	320 - 352	4.4e-07	PPR repeat family
PPR	PF01535	322 - 351	2.2e-07	PPR repeat
PPR_2	PF13041	351 - 397	5.5e-08	PPR repeat family
PPR	PF01535	354 - 383	4.7e-08	PPR repeat
PPR_2	PF13041	452 - 499	1.2e-10	PPR repeat family
PPR	PF01535	454 - 482	7.7e-06	PPR repeat
E_motif	PF20431	569 - 631	1.5e-23	E motif
DYW_deaminase	PF14432	667 - 759	1.9e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	903
AarI	CACCTGC	1 cut(s)	805
Acc36I	ACCTGC	1 cut(s)	805
AccB1I	GGYRCC	2 cut(s)	1521, 1756
AciI	CCGC	5 cut(s)	88, 276, 1305, 1611, 1806
AcoI	YGGCCR	1 cut(s)	28
AcsI	RAATTY	2 cut(s)	105, 1725
AcvI	CACGTG	2 cut(s)	26, 339
AcyI	GRCGYC	2 cut(s)	1219, 1522
AfaI	GTAC	5 cut(s)	345, 1782, 1836, 1958, 2007
AfiI	CCNNNNNNNGG	1 cut(s)	1365
AflIII	ACRYGT	1 cut(s)	338
AjiI	CACGTC	1 cut(s)	1912
AjnI	CCWGG	3 cut(s)	1660, 1873, 2116
Alw21I	GWGCWC	1 cut(s)	1669
Alw26I	GTCTC	1 cut(s)	210
Alw44I	GTGCAC	1 cut(s)	1665
AoxI	GGCC	3 cut(s)	28, 177, 317
ApaLI	GTGCAC	1 cut(s)	1665
ApeKI	GCWGC	5 cut(s)	608, 1193, 1271, 1382, 1733
ApoI	RAATTY	2 cut(s)	105, 1725
Asp700I	GAANNNNTTC	2 cut(s)	527, 1121
AspLEI	GCGC	5 cut(s)	361, 451, 1008, 1198, 1524
AspS9I	GGNCC	2 cut(s)	178, 1906
AsuHPI	GGTGA	1 cut(s)	2264
AvaII	GGWCC	1 cut(s)	1906
AxyI	CCTNAGG	1 cut(s)	1941
BaeGI	GKGCMC	1 cut(s)	1669
BalI	TGGCCA	1 cut(s)	30
BanI	GGYRCC	2 cut(s)	1521, 1756
BanII	GRGCYC	1 cut(s)	2103
BauI	CACGAG	1 cut(s)	612
BbrPI	CACGTG	2 cut(s)	26, 339
BbsI	GAAGAC	2 cut(s)	603, 1906
Bbv12I	GWGCWC	1 cut(s)	1669
BbvI	GCAGC	5 cut(s)	620, 1180, 1258, 1394, 1720
BccI	CCATC	4 cut(s)	260, 625, 1763, 2216
BceAI	ACGGC	1 cut(s)	438
BcgI	CGANNNNNNTGC	2 cut(s)	254, 288
BciT130I	CCWGG	3 cut(s)	1662, 1875, 2118
BclI	TGATCA	1 cut(s)	240
BcoDI	GTCTC	1 cut(s)	210
BfaI	CTAG	2 cut(s)	519, 1976
BfmI	CTRYAG	1 cut(s)	1734
BfoI	RGCGCY	1 cut(s)	1525
BfuAI	ACCTGC	1 cut(s)	805
BglII	AGATCT	1 cut(s)	958
BisI	GCNGC	6 cut(s)	276, 609, 1194, 1272, 1383, 1734
BlsI	GCNGC	6 cut(s)	277, 610, 1195, 1273, 1384, 1735
Bme1390I	CCNGG	3 cut(s)	1662, 1875, 2118
Bme18I	GGWCC	1 cut(s)	1906
BmgBI	CACGTC	1 cut(s)	1912
BmgT120I	GGNCC	2 cut(s)	178, 1906
BmiI	GGNNCC	3 cut(s)	1523, 1758, 1774
BmrFI	CCNGG	3 cut(s)	1662, 1875, 2118
BmrI	ACTGGG	1 cut(s)	588
BmsI	GCATC	5 cut(s)	528, 595, 1017, 1292, 1309
BmuI	ACTGGG	1 cut(s)	588
BpiI	GAAGAC	2 cut(s)	603, 1906
BpmI	CTGGAG	2 cut(s)	1194, 1988
Bpu10I	CCTNAGC	1 cut(s)	1830
BsaAI	YACGTR	3 cut(s)	26, 339, 1780
BsaHI	GRCGYC	2 cut(s)	1219, 1522
BsaJI	CCNNGG	2 cut(s)	138, 354
BsaWI	WCCGGW	1 cut(s)	2008
BsaXI	ACNNNNNCTCC	2 cut(s)	1209, 1239
Bsc4I	CCNNNNNNNGG	1 cut(s)	1365
Bse1I	ACTGG	4 cut(s)	250, 432, 583, 2279
Bse21I	CCTNAGG	1 cut(s)	1941
Bse3DI	GCAATG	1 cut(s)	886
BseBI	CCWGG	3 cut(s)	1662, 1875, 2118
BseDI	CCNNGG	2 cut(s)	138, 354
BseGI	GGATG	8 cut(s)	316, 376, 636, 640, 754, 1008, 1324, 1825
BseLI	CCNNNNNNNGG	1 cut(s)	1365
BseMI	GCAATG	1 cut(s)	886
BseMII	CTCAG	2 cut(s)	1500, 1932
BseNI	ACTGG	4 cut(s)	250, 432, 583, 2279
BseRI	GAGGAG	1 cut(s)	1063
BseSI	GKGCMC	1 cut(s)	1669
BseXI	GCAGC	5 cut(s)	620, 1180, 1258, 1394, 1720
BseYI	CCCAGC	2 cut(s)	733, 1198
BshFI	GGCC	3 cut(s)	30, 179, 319
BshNI	GGYRCC	2 cut(s)	1521, 1756
BsiHKAI	GWGCWC	1 cut(s)	1669
BsiSI	CCGG	1 cut(s)	2009
BslI	CCNNNNNNNGG	1 cut(s)	1365
BsmAI	GTCTC	1 cut(s)	210
BsmI	GAATGC	7 cut(s)	451, 664, 979, 1053, 1375, 2174, 2261
BsnI	GGCC	3 cut(s)	30, 179, 319
Bsp1286I	GDGCHC	2 cut(s)	1669, 2103
Bsp1407I	TGTACA	1 cut(s)	1956
Bsp143I	GATC	4 cut(s)	3, 240, 958, 1594
BspACI	CCGC	5 cut(s)	88, 276, 1305, 1611, 1806
BspANI	GGCC	3 cut(s)	30, 179, 319
BspCNI	CTCAG	2 cut(s)	1499, 1933
BspHI	TCATGA	2 cut(s)	685, 2103
BspLI	GGNNCC	3 cut(s)	1523, 1758, 1774
BspMAI	CTGCAG	1 cut(s)	1738
BspMI	ACCTGC	1 cut(s)	805
BspQI	GCTCTTC	1 cut(s)	1689
BspT107I	GGYRCC	2 cut(s)	1521, 1756
BsrDI	GCAATG	1 cut(s)	886
BsrGI	TGTACA	1 cut(s)	1956
BsrI	ACTGG	4 cut(s)	250, 432, 583, 2279
BssECI	CCNNGG	2 cut(s)	138, 354
BssMI	GATC	4 cut(s)	3, 240, 958, 1594
BssNI	GRCGYC	2 cut(s)	1219, 1522
BssSI	CACGAG	1 cut(s)	612
BssT1I	CCWWGG	1 cut(s)	138
Bst2BI	CACGAG	1 cut(s)	612
Bst2UI	CCWGG	3 cut(s)	1662, 1875, 2118
Bst4CI	ACNGT	9 cut(s)	44, 96, 223, 288, 558, 1069, 1785, 2075, 2252
Bst6I	CTCTTC	3 cut(s)	1101, 1689, 2222
BstACI	GRCGYC	2 cut(s)	1219, 1522
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstAUI	TGTACA	1 cut(s)	1956
BstBAI	YACGTR	3 cut(s)	26, 339, 1780
BstDEI	CTNAG	7 cut(s)	347, 543, 833, 1486, 1830, 1941, 2147
BstF5I	GGATG	8 cut(s)	316, 376, 636, 640, 754, 1008, 1324, 1825
BstH2I	RGCGCY	1 cut(s)	1525
BstHHI	GCGC	5 cut(s)	361, 451, 1008, 1198, 1524
BstKTI	GATC	4 cut(s)	6, 243, 961, 1597
BstMAI	GTCTC	1 cut(s)	210
BstMBI	GATC	4 cut(s)	3, 240, 958, 1594
BstNI	CCWGG	3 cut(s)	1662, 1875, 2118
BstNSI	RCATGY	2 cut(s)	214, 824
BstSCI	CCNGG	3 cut(s)	1660, 1873, 2116
BstSFI	CTRYAG	1 cut(s)	1734
BstSLI	GKGCMC	1 cut(s)	1669
BstSNI	TACGTA	1 cut(s)	1780
BstV1I	GCAGC	5 cut(s)	620, 1180, 1258, 1394, 1720
BstV2I	GAAGAC	2 cut(s)	603, 1906
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
Bsu36I	CCTNAGG	1 cut(s)	1941
BsuRI	GGCC	3 cut(s)	30, 179, 319
BtrI	CACGTC	1 cut(s)	1912
BtsCI	GGATG	8 cut(s)	316, 376, 636, 640, 754, 1008, 1324, 1825
BtsI	GCAGTG	2 cut(s)	389, 1959
BtsIMutI	CAGTG	8 cut(s)	219, 243, 389, 444, 781, 879, 1959, 2080
BveI	ACCTGC	1 cut(s)	805
CciI	TCATGA	2 cut(s)	685, 2103
CfoI	GCGC	5 cut(s)	361, 451, 1008, 1198, 1524
Cfr13I	GGNCC	2 cut(s)	178, 1906
CseI	GACGC	2 cut(s)	671, 1227
Csp6I	GTAC	5 cut(s)	344, 1781, 1835, 1957, 2006
CviQI	GTAC	5 cut(s)	344, 1781, 1835, 1957, 2006
DdeI	CTNAG	7 cut(s)	347, 543, 833, 1486, 1830, 1941, 2147
DinI	GGCGCC	1 cut(s)	1523
DpnI	GATC	4 cut(s)	5, 242, 960, 1596
DpnII	GATC	4 cut(s)	3, 240, 958, 1594
EaeI	YGGCCR	1 cut(s)	28
Eam1104I	CTCTTC	3 cut(s)	1101, 1689, 2222
EarI	CTCTTC	3 cut(s)	1101, 1689, 2222
Eco105I	TACGTA	1 cut(s)	1780
Eco130I	CCWWGG	1 cut(s)	138
Eco147I	AGGCCT	1 cut(s)	319
Eco24I	GRGCYC	1 cut(s)	2103
Eco47I	GGWCC	1 cut(s)	1906
Eco72I	CACGTG	2 cut(s)	26, 339
Eco81I	CCTNAGG	1 cut(s)	1941
EcoRI	GAATTC	1 cut(s)	1725
EcoRII	CCWGG	3 cut(s)	1660, 1873, 2116
EcoT14I	CCWWGG	1 cut(s)	138
EcoT22I	ATGCAT	3 cut(s)	886, 1168, 2176
EcoT38I	GRGCYC	1 cut(s)	2103
EgeI	GGCGCC	1 cut(s)	1523
EheI	GGCGCC	1 cut(s)	1523
ErhI	CCWWGG	1 cut(s)	138
FauI	CCCGC	2 cut(s)	95, 1604
FbaI	TGATCA	1 cut(s)	240
Fnu4HI	GCNGC	6 cut(s)	276, 609, 1194, 1272, 1383, 1734
FokI	GGATG	8 cut(s)	323, 383, 643, 647, 761, 995, 1331, 1832
FriOI	GRGCYC	1 cut(s)	2103
Fsp4HI	GCNGC	6 cut(s)	276, 609, 1194, 1272, 1383, 1734
FspBI	CTAG	2 cut(s)	519, 1976
GlaI	GCGC	5 cut(s)	360, 450, 1007, 1197, 1523
GluI	GCNGC	6 cut(s)	276, 609, 1194, 1272, 1383, 1734
GsaI	CCCAGC	2 cut(s)	737, 1202
GsuI	CTGGAG	2 cut(s)	1194, 1988
HaeII	RGCGCY	1 cut(s)	1525
HaeIII	GGCC	3 cut(s)	30, 179, 319
HapII	CCGG	1 cut(s)	2009
HgaI	GACGC	2 cut(s)	671, 1227
HhaI	GCGC	5 cut(s)	361, 451, 1008, 1198, 1524
Hin1I	GRCGYC	2 cut(s)	1219, 1522
Hin6I	GCGC	5 cut(s)	359, 449, 1006, 1196, 1522
HinP1I	GCGC	5 cut(s)	359, 449, 1006, 1196, 1522
HindIII	AAGCTT	2 cut(s)	2081, 2108
HpaII	CCGG	1 cut(s)	2009
HphI	GGTGA	1 cut(s)	2264
Hpy166II	GTNNAC	9 cut(s)	23, 344, 564, 756, 1151, 1620, 1667, 1909, 1957
Hpy188I	TCNGA	2 cut(s)	2044, 2132
Hpy8I	GTNNAC	9 cut(s)	23, 344, 564, 756, 1151, 1620, 1667, 1909, 1957
HpyAV	CCTTC	3 cut(s)	1435, 1511, 1624
HpyCH4III	ACNGT	9 cut(s)	44, 96, 223, 288, 558, 1069, 1785, 2075, 2252
HpyCH4IV	ACGT	6 cut(s)	25, 338, 928, 1779, 1893, 1911
HpyF3I	CTNAG	7 cut(s)	347, 543, 833, 1486, 1830, 1941, 2147
HpySE526I	ACGT	6 cut(s)	25, 338, 928, 1779, 1893, 1911
Hsp92I	GRCGYC	2 cut(s)	1219, 1522
HspAI	GCGC	5 cut(s)	359, 449, 1006, 1196, 1522
KasI	GGCGCC	1 cut(s)	1521
Ksp22I	TGATCA	1 cut(s)	240
Kzo9I	GATC	4 cut(s)	3, 240, 958, 1594
LguI	GCTCTTC	1 cut(s)	1689
LmnI	GCTCC	5 cut(s)	1050, 1175, 1202, 1230, 1969
Lsp1109I	GCAGC	5 cut(s)	620, 1180, 1258, 1394, 1720
LweI	GCATC	5 cut(s)	528, 595, 1017, 1292, 1309
MaeI	CTAG	2 cut(s)	519, 1976
MaeII	ACGT	6 cut(s)	25, 338, 928, 1779, 1893, 1911
MaeIII	GTNAC	1 cut(s)	1465
MalI	GATC	4 cut(s)	5, 242, 960, 1596
MboI	GATC	4 cut(s)	3, 240, 958, 1594
MboII	GAAGA	8 cut(s)	60, 471, 608, 1118, 1583, 1676, 1906, 2239
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	2 cut(s)	1669, 2103
MlsI	TGGCCA	1 cut(s)	30
MluCI	AATT	5 cut(s)	105, 524, 1725, 2017, 2211
MluNI	TGGCCA	1 cut(s)	30
Mly113I	GGCGCC	1 cut(s)	1522
MlyI	GAGTC	3 cut(s)	1696, 1737, 2048
MmeI	TCCRAC	2 cut(s)	624, 1865
Mox20I	TGGCCA	1 cut(s)	30
Mph1103I	ATGCAT	3 cut(s)	886, 1168, 2176
MroXI	GAANNNNTTC	2 cut(s)	527, 1121
MscI	TGGCCA	1 cut(s)	30
MseI	TTAA	7 cut(s)	39, 144, 411, 468, 939, 1863, 2139
MslI	CAYNNNNRTG	3 cut(s)	337, 1401, 1672
Msp20I	TGGCCA	1 cut(s)	30
MspA1I	CMGCKG	2 cut(s)	278, 1271
MspI	CCGG	1 cut(s)	2009
MspR9I	CCNGG	3 cut(s)	1662, 1875, 2118
Mva1269I	GAATGC	7 cut(s)	451, 664, 979, 1053, 1375, 2174, 2261
MvaI	CCWGG	3 cut(s)	1662, 1875, 2118
NarI	GGCGCC	1 cut(s)	1522
NdeII	GATC	4 cut(s)	3, 240, 958, 1594
NlaIV	GGNNCC	3 cut(s)	1523, 1758, 1774
NmeAIII	GCCGAG	1 cut(s)	335
NsiI	ATGCAT	3 cut(s)	886, 1168, 2176
NspI	RCATGY	2 cut(s)	214, 824
PaeI	GCATGC	2 cut(s)	214, 824
PagI	TCATGA	2 cut(s)	685, 2103
PaqCI	CACCTGC	1 cut(s)	805
PceI	AGGCCT	1 cut(s)	319
PciSI	GCTCTTC	1 cut(s)	1689
PctI	GAATGC	7 cut(s)	451, 664, 979, 1053, 1375, 2174, 2261
PdmI	GAANNNNTTC	2 cut(s)	527, 1121
PfeI	GAWTC	8 cut(s)	689, 739, 1256, 1355, 1547, 1643, 1711, 2143
PfoI	TCCNGGA	1 cut(s)	2116
PkrI	GCNGC	6 cut(s)	277, 610, 1195, 1273, 1384, 1735
PleI	GAGTC	3 cut(s)	1696, 1737, 2047
PluTI	GGCGCC	1 cut(s)	1525
PmaCI	CACGTG	2 cut(s)	26, 339
PmlI	CACGTG	2 cut(s)	26, 339
PpsI	GAGTC	3 cut(s)	1696, 1737, 2047
Ppu21I	YACGTR	3 cut(s)	26, 339, 1780
PsiI	TTATAA	1 cut(s)	903
Psp6I	CCWGG	3 cut(s)	1660, 1873, 2116
PspCI	CACGTG	2 cut(s)	26, 339
PspFI	CCCAGC	2 cut(s)	733, 1198
PspGI	CCWGG	3 cut(s)	1660, 1873, 2116
PspN4I	GGNNCC	3 cut(s)	1523, 1758, 1774
PspPI	GGNCC	2 cut(s)	178, 1906
PstI	CTGCAG	1 cut(s)	1738
PsuI	RGATCY	1 cut(s)	958
PvuII	CAGCTG	1 cut(s)	1271
RsaI	GTAC	5 cut(s)	345, 1782, 1836, 1958, 2007
RsaNI	GTAC	5 cut(s)	344, 1781, 1835, 1957, 2006
RseI	CAYNNNNRTG	3 cut(s)	337, 1401, 1672
SapI	GCTCTTC	1 cut(s)	1689
SaqAI	TTAA	7 cut(s)	39, 144, 411, 468, 939, 1863, 2139
SatI	GCNGC	6 cut(s)	276, 609, 1194, 1272, 1383, 1734
Sau3AI	GATC	4 cut(s)	3, 240, 958, 1594
Sau96I	GGNCC	2 cut(s)	178, 1906
SchI	GAGTC	3 cut(s)	1696, 1737, 2048
ScrFI	CCNGG	3 cut(s)	1662, 1875, 2118
SduI	GDGCHC	2 cut(s)	1669, 2103
SfaNI	GCATC	5 cut(s)	528, 595, 1017, 1292, 1309
SfcI	CTRYAG	1 cut(s)	1734
SfoI	GGCGCC	1 cut(s)	1523
SinI	GGWCC	1 cut(s)	1906
SmiMI	CAYNNNNRTG	3 cut(s)	337, 1401, 1672
SnaBI	TACGTA	1 cut(s)	1780
SphI	GCATGC	2 cut(s)	214, 824
Sse9I	AATT	5 cut(s)	105, 524, 1725, 2017, 2211
SseBI	AGGCCT	1 cut(s)	319
SsiI	CCGC	5 cut(s)	88, 276, 1305, 1611, 1806
SspDI	GGCGCC	1 cut(s)	1521
SspI	AATATT	3 cut(s)	76, 189, 790
SspMI	CTAG	2 cut(s)	519, 1976
StuI	AGGCCT	1 cut(s)	319
StyD4I	CCNGG	3 cut(s)	1660, 1873, 2116
StyI	CCWWGG	1 cut(s)	138
TaaI	ACNGT	9 cut(s)	44, 96, 223, 288, 558, 1069, 1785, 2075, 2252
TaiI	ACGT	6 cut(s)	28, 341, 931, 1782, 1896, 1914
TaqI	TCGA	3 cut(s)	130, 192, 531
TasI	AATT	5 cut(s)	105, 524, 1725, 2017, 2211
TatI	WGTACW	2 cut(s)	343, 1956
TauI	GCSGC	1 cut(s)	278
TfiI	GAWTC	8 cut(s)	689, 739, 1256, 1355, 1547, 1643, 1711, 2143
Tru1I	TTAA	7 cut(s)	39, 144, 411, 468, 939, 1863, 2139
Tru9I	TTAA	7 cut(s)	39, 144, 411, 468, 939, 1863, 2139
TscAI	CASTG	8 cut(s)	226, 250, 389, 444, 781, 879, 1959, 2080
TseI	GCWGC	5 cut(s)	608, 1193, 1271, 1382, 1733
TspGWI	ACGGA	3 cut(s)	1110, 1348, 1852
TspRI	CASTG	8 cut(s)	226, 250, 389, 444, 781, 879, 1959, 2080
VneI	GTGCAC	1 cut(s)	1665
VpaK11BI	GGWCC	1 cut(s)	1906
XapI	RAATTY	2 cut(s)	105, 1725
XceI	RCATGY	2 cut(s)	214, 824
XcmI	CCANNNNNNNNNTGG	1 cut(s)	263
XmnI	GAANNNNTTC	2 cut(s)	527, 1121
XspI	CTAG	2 cut(s)	519, 1976
Zsp2I	ATGCAT	3 cut(s)	886, 1168, 2176

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.