Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7C

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Forward (+)

54832729 .. 54834552

Gene Structure 1824 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7CG423700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1824 bp

ATGTGTTGGTGTCTGTATGTTAAGTGTGCTTCTTCACCGTTGGTGTCTTCGTCGTCGGTGGTGGTGGCTGCGGCGAGGAAGGTGTTTGATGAATTGCCTAAGAGAGATGAGCTGTCGTGGACGACGATGATTACTGGTTATGTGAGGAATGAGGACCTTGATGGAGCTCGGCAGTTGCTAGATGGAATGGATGAAAAATTGGAAGTGGCGTGGAATGCAATGATTTCGGGTTATGTGCATCATGGTTTTTGTCATGAGGCATTGAAATTGTTCAGGGAAATGCATTTAATGGGGATTCGACAGGATGAGTTTACATACACGAGTGTTATCAGTGCTTGTGCTAACAATGGCTTATTTAAGCATGGGAAGCAGCTGCATGCTTACATACTAAGATCTGAAGCAAAACCGACTGTGGACTTTTCTTTATCTGTGAATAATGCATTGGTTACACTATACTTTAGGTGCGGTAAAATTGATGAAGCACGATATATTTTTAATAATATGTCCGTCAAAGATCTTGTTTCTTTGAATGCAATATTGTCAGGGTATGTGAGTGGAGGGCGCATCCAGGAAGCAAAATCCTTTTTTGAGGAAATGCCGGAAAGGAGTGGTCTAACTTGGACTGTAATAATATCAGGTTTAGCTCAAAATGGATGTGGGGAAGAAGCTATGAAGCTATTTAACCAAATGAGACTAGATGGTTTTAAACCCTGTGATTATGCATTTGCTGGAGCTATTACGTCTTGTGCTGCTCTGGGGGCGTTGGAGCTCCATGCTCAACTAATATGCTTGGGGCATGATTCAAGCCTTTCAGTTGGAAATTCACTTATCACAATGTATGCCAGATGTGGGGTTGTAGACGATGCTGACTGTGTGTTCCTCACAATGCCTTATATTGATTCCGTGTCGTGGAATGCTATGATCGCAGCCCTGGCACAACATGGATATGGTGTCCAAGCAATTAGACTTTTCAAACAGATGTTGGGGGAAGATATAATGCCAGATAGAATAACTTTCCTCACTATTCTGTCAGCTTGTAGTCATGCTGGTTTAGTTAAAGAAGGACGCCAATATTTTCGTTTAATGCATGACTCTTATGGTATTGCCCCTGGTGAAGACCATTATGCTCGTATGATTGATTTGTTGTGCCGATCTGGGGAGTTGACAGAGGCCAAGGACTTAATCAAATCAATGCCTTTTGAACCAGGTGCACCAATTTGGGAGGCTATTCTAGCTGGTTGCCGGACTCATGGGAATATGGATTTAGGTATTCAAGCTGTAGAACGACTCTTTGAGCTGGTGCCCCAGCATGATGGAACCTATGTACTTTTGTCGAACTTGTATGTTGCTTTAGGCCGTTGGGATAATGTGGCTAAGGTGCGAAAACTAATGAGGGAGCGAGGGGTTAAGAAAGAACCTGGTTGTAGTTGGATTGACGTTGAAAATATGGTCCATGTCTTCTTGGTTGGTGATACTGTGCACCCTGAGGTAAATGAGGTGTACAAGTATCTAGAGCAACTGGTTCTTAAAATGAGGAAGTTAGGATATGCCCCTGACACAAAGTTTGGGTTGCGTGATATGGAGTCTGAGCATAAGGAGAATTCCTTGTCTACTCACAGTGAGAAGCTTGAAGTTGCATTTGGGATCATGAAGCTTCCTCTTGGAGCCACAATTAGAGTTTTTAAGAATCTTAGGATCTGTGGGGATTGCCATAATGCATTTAAGTATGTGTCAAGAGTGGTTGGAAGAGAGATAGTTGTGAGAGACGCCAAGAGGTTTCATCATTTTAGGAACGGCAAATGCTCTTGTGGAAATTACTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

607

Amino Acids

68.07

Weight (kDa)

6.6

Isoelectric Point (pI)

32.44

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	69 - 99	2.8e-09	PPR repeat
PPR_2	PF13041	69 - 115	1.8e-12	PPR repeat family
PPR	PF01535	206 - 235	6.3e-08	PPR repeat
PPR_2	PF13041	206 - 249	3.7e-07	PPR repeat family
PPR_2	PF13041	300 - 347	5e-10	PPR repeat family
PPR	PF01535	302 - 331	6.3e-06	PPR repeat
E_motif	PF20431	417 - 479	3.7e-21	E motif
DYW_deaminase	PF14432	515 - 607	6.6e-41	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1300
AccI	GTMKAC	2 cut(s)	858, 1610
AciI	CCGC	2 cut(s)	71, 465
AclWI	GGATC	2 cut(s)	1652, 1703
AcsI	RAATTY	2 cut(s)	820, 1600
AcuI	CTGAAG	1 cut(s)	417
AcyI	GRCGYC	2 cut(s)	1066, 1767
AfaI	GTAC	2 cut(s)	1326, 1502
AfiI	CCNNNNNNNGG	3 cut(s)	849, 909, 1156
AgsI	TTSAA	8 cut(s)	265, 529, 804, 973, 1202, 1274, 1442, 1631
AjnI	CCWGG	5 cut(s)	567, 930, 1108, 1204, 1417
AjuI	GAANNNNNNNTTGG	4 cut(s)	425, 457, 1623, 1655
Alw21I	GWGCWC	4 cut(s)	169, 771, 1213, 1482
Alw26I	GTCTC	2 cut(s)	685, 1758
Alw44I	GTGCAC	2 cut(s)	1209, 1478
AlwI	GGATC	2 cut(s)	1652, 1703
AoxI	GGCC	2 cut(s)	1170, 1354
ApaLI	GTGCAC	2 cut(s)	1209, 1478
ApeKI	GCWGC	5 cut(s)	68, 370, 373, 749, 926
ApoI	RAATTY	2 cut(s)	820, 1600
ArsI	GACNNNNNNTTYG	2 cut(s)	1547, 1579
Asp700I	GAANNNNTTC	1 cut(s)	269
AspLEI	GCGC	1 cut(s)	564
AspS9I	GGNCC	2 cut(s)	154, 1450
AsuHPI	GGTGA	3 cut(s)	27, 1124, 1481
AvaII	GGWCC	2 cut(s)	154, 1450
AxyI	CCTNAGG	1 cut(s)	1485
BaeGI	GKGCMC	3 cut(s)	1213, 1305, 1482
BanI	GGYRCC	1 cut(s)	1300
BanII	GRGCYC	2 cut(s)	169, 771
BauI	CACGAG	1 cut(s)	319
BbsI	GAAGAC	3 cut(s)	39, 1122, 1450
Bbv12I	GWGCWC	4 cut(s)	169, 771, 1213, 1482
BbvI	GCAGC	5 cut(s)	55, 360, 382, 736, 938
BccI	CCATC	4 cut(s)	155, 176, 692, 1307
BceAI	ACGGC	2 cut(s)	1341, 1810
BcgI	CGANNNNNNTGC	2 cut(s)	207, 241
BciT130I	CCWGG	5 cut(s)	569, 932, 1110, 1206, 1419
BcoDI	GTCTC	2 cut(s)	685, 1758
BfaI	CTAG	4 cut(s)	179, 695, 1232, 1511
BfmI	CTRYAG	1 cut(s)	1278
BglII	AGATCT	2 cut(s)	392, 514
BisI	GCNGC	6 cut(s)	69, 72, 371, 374, 750, 927
BlsI	GCNGC	6 cut(s)	70, 73, 372, 375, 751, 928
Bme1390I	CCNGG	5 cut(s)	569, 932, 1110, 1206, 1419
Bme18I	GGWCC	2 cut(s)	154, 1450
BmgT120I	GGNCC	2 cut(s)	154, 1450
BmiI	GGNNCC	3 cut(s)	1302, 1318, 1666
BmrFI	CCNGG	5 cut(s)	569, 932, 1110, 1206, 1419
BmsI	GCATC	3 cut(s)	247, 573, 853
BpiI	GAAGAC	3 cut(s)	39, 1122, 1450
BpmI	CTGGAG	1 cut(s)	750
Bpu10I	CCTNAGC	1 cut(s)	1374
BsaHI	GRCGYC	2 cut(s)	1066, 1767
BsaJI	CCNNGG	3 cut(s)	930, 1108, 1173
Bsc4I	CCNNNNNNNGG	3 cut(s)	849, 909, 1156
Bse1I	ACTGG	3 cut(s)	139, 1524, 1823
Bse21I	CCTNAGG	1 cut(s)	1485
Bse3DI	GCAATG	1 cut(s)	225
BseBI	CCWGG	5 cut(s)	569, 932, 1110, 1206, 1419
BseDI	CCNNGG	3 cut(s)	930, 1108, 1173
BseGI	GGATG	4 cut(s)	196, 310, 564, 659
BseLI	CCNNNNNNNGG	3 cut(s)	849, 909, 1156
BseMI	GCAATG	1 cut(s)	225
BseMII	CTCAG	2 cut(s)	1476, 1578
BseNI	ACTGG	3 cut(s)	139, 1524, 1823
BseSI	GKGCMC	3 cut(s)	1213, 1305, 1482
BseXI	GCAGC	5 cut(s)	55, 360, 382, 736, 938
BseYI	CCCAGC	1 cut(s)	1305
BshFI	GGCC	2 cut(s)	1172, 1356
BshNI	GGYRCC	1 cut(s)	1300
BsiHKAI	GWGCWC	4 cut(s)	169, 771, 1213, 1482
BsiSI	CCGG	2 cut(s)	599, 1243
BslI	CCNNNNNNNGG	3 cut(s)	849, 909, 1156
BsmAI	GTCTC	2 cut(s)	685, 1758
BsmBI	CGTCTC	1 cut(s)	1758
BsmI	GAATGC	3 cut(s)	220, 535, 919
BsnI	GGCC	2 cut(s)	1172, 1356
Bsp1286I	GDGCHC	5 cut(s)	169, 771, 1213, 1305, 1482
Bsp1407I	TGTACA	1 cut(s)	1500
Bsp143I	GATC	6 cut(s)	392, 514, 921, 1151, 1644, 1695
BspACI	CCGC	2 cut(s)	71, 465
BspANI	GGCC	2 cut(s)	1172, 1356
BspCNI	CTCAG	2 cut(s)	1477, 1579
BspHI	TCATGA	2 cut(s)	253, 1647
BspLI	GGNNCC	3 cut(s)	1302, 1318, 1666
BspPI	GGATC	2 cut(s)	1652, 1703
BspT107I	GGYRCC	1 cut(s)	1300
BsrDI	GCAATG	1 cut(s)	225
BsrGI	TGTACA	1 cut(s)	1500
BsrI	ACTGG	3 cut(s)	139, 1524, 1823
BssECI	CCNNGG	3 cut(s)	930, 1108, 1173
BssMI	GATC	6 cut(s)	392, 514, 921, 1151, 1644, 1695
BssNI	GRCGYC	2 cut(s)	1066, 1767
BssSI	CACGAG	1 cut(s)	319
BssT1I	CCWWGG	1 cut(s)	1173
Bst2BI	CACGAG	1 cut(s)	319
Bst2UI	CCWGG	5 cut(s)	569, 932, 1110, 1206, 1419
Bst4CI	ACNGT	6 cut(s)	39, 412, 625, 872, 1477, 1619
Bst6I	CTCTTC	1 cut(s)	1741
BstACI	GRCGYC	2 cut(s)	1066, 1767
BstAUI	TGTACA	1 cut(s)	1500
BstC8I	GCNNGC	1 cut(s)	378
BstDEI	CTNAG	6 cut(s)	99, 389, 1374, 1485, 1587, 1691
BstF5I	GGATG	4 cut(s)	196, 310, 564, 659
BstHHI	GCGC	1 cut(s)	564
BstKTI	GATC	6 cut(s)	395, 517, 924, 1154, 1647, 1698
BstMAI	GTCTC	2 cut(s)	685, 1758
BstMBI	GATC	6 cut(s)	392, 514, 921, 1151, 1644, 1695
BstMWI	GCNNNNNNNGC	6 cut(s)	215, 367, 758, 923, 932, 1232
BstNI	CCWGG	5 cut(s)	569, 932, 1110, 1206, 1419
BstNSI	RCATGY	1 cut(s)	380
BstSCI	CCNGG	5 cut(s)	567, 930, 1108, 1204, 1417
BstSFI	CTRYAG	1 cut(s)	1278
BstSLI	GKGCMC	3 cut(s)	1213, 1305, 1482
BstV1I	GCAGC	5 cut(s)	55, 360, 382, 736, 938
BstV2I	GAAGAC	3 cut(s)	39, 1122, 1450
BstX2I	RGATCY	3 cut(s)	392, 514, 1695
BstXI	CCANNNNNNTGG	1 cut(s)	1313
BstYI	RGATCY	3 cut(s)	392, 514, 1695
Bsu36I	CCTNAGG	1 cut(s)	1485
BsuRI	GGCC	2 cut(s)	1172, 1356
BtsCI	GGATG	4 cut(s)	196, 310, 564, 659
BtsIMutI	CAGTG	2 cut(s)	337, 1624
Cac8I	GCNNGC	1 cut(s)	378
CciI	TCATGA	2 cut(s)	253, 1647
CfoI	GCGC	1 cut(s)	564
Cfr13I	GGNCC	2 cut(s)	154, 1450
CseI	GACGC	2 cut(s)	1074, 1775
CsiI	ACCWGGT	2 cut(s)	1204, 1417
Csp6I	GTAC	2 cut(s)	1325, 1501
CviQI	GTAC	2 cut(s)	1325, 1501
DdeI	CTNAG	6 cut(s)	99, 389, 1374, 1485, 1587, 1691
DpnI	GATC	6 cut(s)	394, 516, 923, 1153, 1646, 1697
DpnII	GATC	6 cut(s)	392, 514, 921, 1151, 1644, 1695
DraI	TTTAAA	1 cut(s)	706
Eam1104I	CTCTTC	1 cut(s)	1741
EarI	CTCTTC	1 cut(s)	1741
Ecl136II	GAGCTC	2 cut(s)	167, 769
Eco130I	CCWWGG	1 cut(s)	1173
Eco24I	GRGCYC	2 cut(s)	169, 771
Eco47I	GGWCC	2 cut(s)	154, 1450
Eco53kI	GAGCTC	2 cut(s)	167, 769
Eco57I	CTGAAG	1 cut(s)	417
Eco81I	CCTNAGG	1 cut(s)	1485
EcoICRI	GAGCTC	2 cut(s)	167, 769
EcoO109I	RGGNCCY	1 cut(s)	154
EcoRI	GAATTC	1 cut(s)	1600
EcoRII	CCWGG	5 cut(s)	567, 930, 1108, 1204, 1417
EcoT14I	CCWWGG	1 cut(s)	1173
EcoT22I	ATGCAT	5 cut(s)	285, 442, 724, 1089, 1720
EcoT38I	GRGCYC	2 cut(s)	169, 771
ErhI	CCWWGG	1 cut(s)	1173
Esp3I	CGTCTC	1 cut(s)	1758
FblI	GTMKAC	2 cut(s)	858, 1610
Fnu4HI	GCNGC	6 cut(s)	69, 72, 371, 374, 750, 927
FokI	GGATG	4 cut(s)	203, 317, 551, 666
FriOI	GRGCYC	2 cut(s)	169, 771
Fsp4HI	GCNGC	6 cut(s)	69, 72, 371, 374, 750, 927
FspBI	CTAG	4 cut(s)	179, 695, 1232, 1511
GlaI	GCGC	1 cut(s)	563
GluI	GCNGC	6 cut(s)	69, 72, 371, 374, 750, 927
GsaI	CCCAGC	1 cut(s)	1309
GsuI	CTGGAG	1 cut(s)	750
HaeIII	GGCC	2 cut(s)	1172, 1356
HapII	CCGG	2 cut(s)	599, 1243
HgaI	GACGC	2 cut(s)	1074, 1775
HhaI	GCGC	1 cut(s)	564
Hin1I	GRCGYC	2 cut(s)	1066, 1767
Hin6I	GCGC	1 cut(s)	562
HinP1I	GCGC	1 cut(s)	562
HincII	GTYRAC	1 cut(s)	1164
HindII	GTYRAC	1 cut(s)	1164
HindIII	AAGCTT	2 cut(s)	1625, 1652
HinfI	GANTC	8 cut(s)	295, 800, 899, 1091, 1246, 1287, 1583, 1687
HpaII	CCGG	2 cut(s)	599, 1243
HphI	GGTGA	3 cut(s)	27, 1124, 1481
Hpy166II	GTNNAC	9 cut(s)	120, 312, 415, 859, 1164, 1211, 1480, 1501, 1611
Hpy188I	TCNGA	2 cut(s)	397, 1588
Hpy188III	TCNNGA	4 cut(s)	254, 1511, 1648, 1734
Hpy8I	GTNNAC	9 cut(s)	120, 312, 415, 859, 1164, 1211, 1480, 1501, 1611
Hpy99I	CGWCG	3 cut(s)	55, 58, 127
HpyAV	CCTTC	2 cut(s)	73, 1055
HpyCH4III	ACNGT	6 cut(s)	39, 412, 625, 872, 1477, 1619
HpyCH4IV	ACGT	2 cut(s)	740, 1437
HpyF10VI	GCNNNNNNNGC	6 cut(s)	215, 367, 758, 923, 932, 1232
HpyF3I	CTNAG	6 cut(s)	99, 389, 1374, 1485, 1587, 1691
HpySE526I	ACGT	2 cut(s)	740, 1437
Hsp92I	GRCGYC	2 cut(s)	1066, 1767
HspAI	GCGC	1 cut(s)	562
Kzo9I	GATC	6 cut(s)	392, 514, 921, 1151, 1644, 1695
LmnI	GCTCC	6 cut(s)	164, 731, 766, 774, 1396, 1664
Lsp1109I	GCAGC	5 cut(s)	55, 360, 382, 736, 938
LweI	GCATC	3 cut(s)	247, 573, 853
MabI	ACCWGGT	2 cut(s)	1204, 1417
MaeI	CTAG	4 cut(s)	179, 695, 1232, 1511
MaeII	ACGT	2 cut(s)	740, 1437
MaeIII	GTNAC	1 cut(s)	445
MalI	GATC	6 cut(s)	394, 516, 923, 1153, 1646, 1697
MboI	GATC	6 cut(s)	392, 514, 921, 1151, 1644, 1695
MboII	GAAGA	7 cut(s)	24, 39, 674, 1001, 1127, 1450, 1758
MflI	RGATCY	3 cut(s)	392, 514, 1695
MhlI	GDGCHC	5 cut(s)	169, 771, 1213, 1305, 1482
MlyI	GAGTC	4 cut(s)	1085, 1240, 1281, 1592
MmeI	TCCRAC	4 cut(s)	744, 796, 1409, 1723
Mph1103I	ATGCAT	5 cut(s)	285, 442, 724, 1089, 1720
MroXI	GAANNNNTTC	1 cut(s)	269
MslI	CAYNNNNRTG	1 cut(s)	945
MspA1I	CMGCKG	1 cut(s)	373
MspI	CCGG	2 cut(s)	599, 1243
MspR9I	CCNGG	5 cut(s)	569, 932, 1110, 1206, 1419
Mva1269I	GAATGC	3 cut(s)	220, 535, 919
MvaI	CCWGG	5 cut(s)	569, 932, 1110, 1206, 1419
MwoI	GCNNNNNNNGC	6 cut(s)	215, 367, 758, 923, 932, 1232
NdeII	GATC	6 cut(s)	392, 514, 921, 1151, 1644, 1695
NlaIV	GGNNCC	3 cut(s)	1302, 1318, 1666
NmeAIII	GCCGAG	1 cut(s)	148
NsiI	ATGCAT	5 cut(s)	285, 442, 724, 1089, 1720
NspI	RCATGY	1 cut(s)	380
PaeI	GCATGC	1 cut(s)	380
PagI	TCATGA	2 cut(s)	253, 1647
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PctI	GAATGC	3 cut(s)	220, 535, 919
PdmI	GAANNNNTTC	1 cut(s)	269
PfeI	GAWTC	4 cut(s)	295, 800, 899, 1687
PfoI	TCCNGGA	1 cut(s)	567
PkrI	GCNGC	6 cut(s)	70, 73, 372, 375, 751, 928
PleI	GAGTC	4 cut(s)	1085, 1240, 1281, 1591
PpsI	GAGTC	4 cut(s)	1085, 1240, 1281, 1591
PpuMI	RGGWCCY	1 cut(s)	154
Psp124BI	GAGCTC	2 cut(s)	169, 771
Psp5II	RGGWCCY	1 cut(s)	154
Psp6I	CCWGG	5 cut(s)	567, 930, 1108, 1204, 1417
PspFI	CCCAGC	1 cut(s)	1305
PspGI	CCWGG	5 cut(s)	567, 930, 1108, 1204, 1417
PspN4I	GGNNCC	3 cut(s)	1302, 1318, 1666
PspPI	GGNCC	2 cut(s)	154, 1450
PspPPI	RGGWCCY	1 cut(s)	154
PsuI	RGATCY	3 cut(s)	392, 514, 1695
PvuII	CAGCTG	1 cut(s)	373
RsaI	GTAC	2 cut(s)	1326, 1502
RsaNI	GTAC	2 cut(s)	1325, 1501
RseI	CAYNNNNRTG	1 cut(s)	945
SacI	GAGCTC	2 cut(s)	169, 771
SatI	GCNGC	6 cut(s)	69, 72, 371, 374, 750, 927
Sau3AI	GATC	6 cut(s)	392, 514, 921, 1151, 1644, 1695
Sau96I	GGNCC	2 cut(s)	154, 1450
SchI	GAGTC	4 cut(s)	1085, 1240, 1281, 1592
ScrFI	CCNGG	5 cut(s)	569, 932, 1110, 1206, 1419
SduI	GDGCHC	5 cut(s)	169, 771, 1213, 1305, 1482
SexAI	ACCWGGT	2 cut(s)	1204, 1417
SfaNI	GCATC	3 cut(s)	247, 573, 853
SfcI	CTRYAG	1 cut(s)	1278
SinI	GGWCC	2 cut(s)	154, 1450
SmiMI	CAYNNNNRTG	1 cut(s)	945
SphI	GCATGC	1 cut(s)	380
SsiI	CCGC	2 cut(s)	71, 465
SspI	AATATT	2 cut(s)	537, 1073
SspMI	CTAG	4 cut(s)	179, 695, 1232, 1511
SstI	GAGCTC	2 cut(s)	169, 771
StyD4I	CCNGG	5 cut(s)	567, 930, 1108, 1204, 1417
StyI	CCWWGG	1 cut(s)	1173
TaaI	ACNGT	6 cut(s)	39, 412, 625, 872, 1477, 1619
TaiI	ACGT	2 cut(s)	743, 1440
TaqI	TCGA	2 cut(s)	298, 1334
TatI	WGTACW	2 cut(s)	1324, 1500
TauI	GCSGC	1 cut(s)	74
TfiI	GAWTC	4 cut(s)	295, 800, 899, 1687
TscAI	CASTG	2 cut(s)	337, 1624
TseI	GCWGC	5 cut(s)	68, 370, 373, 749, 926
TspDTI	ATGAA	6 cut(s)	105, 207, 492, 686, 1664, 1769
TspGWI	ACGGA	2 cut(s)	496, 892
TspRI	CASTG	2 cut(s)	337, 1624
VneI	GTGCAC	2 cut(s)	1209, 1478
VpaK11BI	GGWCC	2 cut(s)	154, 1450
XapI	RAATTY	2 cut(s)	820, 1600
XbaI	TCTAGA	1 cut(s)	1510
XceI	RCATGY	1 cut(s)	380
XmiI	GTMKAC	2 cut(s)	858, 1610
XmnI	GAANNNNTTC	1 cut(s)	269
XspI	CTAG	4 cut(s)	179, 695, 1232, 1511
Zsp2I	ATGCAT	5 cut(s)	285, 442, 724, 1089, 1720

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.