Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000007

Orthogroup ID

OG0004093

Physical Location & Seq

Genomic Coordinates Forward (+)

23491157 .. 23492145

Gene Structure 989 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug07G0252700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGGAACCACGAACTCTGCAACTAATGGAGCTACAAACCCAGCAACAAATCGAGGATGTAGGAAACAACCAAGCAGCCGGGAGTAGTGCCAACACGGATTTCTGGCGAAGCCGTACCAGGTGGATTCCTACTCCAGATCAAATAAGAATCCTCAAGGATCTTTACTACGACAAGGGAGTTAAGTGCCCAACTACAGAGCACATTCACGAGATCTGTCTCCAGCTGAACCAGTATGGACAGGTTGAGGGCAAGAACATTTACTTTTGGTTCCAGAACGTCAGGGCTCGAGAGAAGCAGATGAAGAGGTGCAATCAGGCTGCTCAAGTGCCCATGGGAACTAGTTCTCCTGGTACTGGTGGATCCATTGATATTAATTTTGGGTCCACTAGTCCTACTGGTGCTGGTGGATCCATCGACATCAATTTTGGGCCAGCTGGTGGATCCATTGACATCAATTTTGGGCCACGGGTCGACTGCAGTGTTGACCGGTATTCCTCCTCACCCTTCAACACTAATACTAGTACTTCCTCCTTTGGCACAAAAGGAGGACAAACTTTCATGGAACAGCGAGGGGAGGATCACCAGGAGATTGAAACTCTTCCTCTGTTCCCCATGCACGGTGAGGACGTCCTTGGTGGCCTGAAGACTACTTCTGAGGGAGGTAGCGGCTATGGCTACTATTCCGGTGGCTCGGGAAGTTACAACGGTGGCTCTCACGTTTCTCTTGAGCTCAGCCTCAACCCATCCGGAGCTGGTGACTTGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

255

Amino Acids

27.55

Weight (kDa)

5.11

Isoelectric Point (pI)

43.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Homeodomain	PF00046	38 - 99	2.4e-09	Homeodomain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004093)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G25360
fragaria_vesca	FvH4_5g32410 FvH4_6g08990
malus_domestica	MD17G1265000.v1.1
prunus_persica	Prupe.3G114900_v2.0.a1 Prupe.3G115100_v2.0.a1
pyrus_communis	pycom17g26470
rosa_chinensis	RchiOBHm_Chr7g0221631 RchiOBHm_Chr7g0228891 RchiOBHm_Chr7g0228961
rosa_laevigata	RLG00000001538 RLG00000002149
rosa_multiflora	Rmu_sc0005016.1_g000036 Rmu_sc0005913.1_g000007 Rmu_sc0005913.1_g000028 Rmu_sc0027650.1_g000001
rosa_roxburghii	Rroxscaffold_3G00230820 Rroxscaffold_3G00238170
rosa_rugosa	Rorug07G0202700 Rorug07G0202700 Rorug07G0252700 Rorug07G0254200
rosa_samantha	Rh7AG343100 Rh7AG405900 Rh7BG333100 Rh7BG385400 Rh7CG360700 Rh7CG423700 Rh7DG341100
rosa_wichuraiana	Rw0G004030 Rw7G029100 Rw7G033660 Rw7G033680

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	630
AccB7I	CCANNNNNTGG	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	471
AccIII	TCCGGA	1 cut(s)	746
AciI	CCGC	1 cut(s)	666
AclWI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 585
AcuI	CTGAAG	1 cut(s)	662
AcyI	GRCGYC	1 cut(s)	627
AfaI	GTAC	3 cut(s)	115, 352, 523
AfiI	CCNNNNNNNGG	3 cut(s)	353, 437, 617
AgeI	ACCGGT	1 cut(s)	486
AgsI	TTSAA	2 cut(s)	508, 593
AhlI	ACTAGT	3 cut(s)	338, 386, 518
AjnI	CCWGG	3 cut(s)	116, 346, 582
AjuI	GAANNNNNNNTTGG	2 cut(s)	83, 115
AloI	GAACNNNNNNTCC	2 cut(s)	328, 360
AluBI	AGCT	5 cut(s)	31, 223, 434, 730, 752
AluI	AGCT	5 cut(s)	31, 223, 434, 730, 752
Alw21I	GWGCWC	2 cut(s)	201, 732
Alw26I	GTCTC	1 cut(s)	221
AlwI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 585
Ama87I	CYCGRG	2 cut(s)	285, 691
Aor13HI	TCCGGA	1 cut(s)	746
AoxI	GGCC	3 cut(s)	428, 461, 637
ApeKI	GCWGC	2 cut(s)	74, 317
ArsI	GACNNNNNNTTYG	4 cut(s)	407, 439, 440, 472
AseI	ATTAAT	1 cut(s)	372
AsiGI	ACCGGT	1 cut(s)	486
Asp700I	GAANNNNTTC	2 cut(s)	340, 597
AspS9I	GGNCC	3 cut(s)	381, 428, 461
AsuC2I	CCSGG	1 cut(s)	79
AsuHPI	GGTGA	4 cut(s)	492, 572, 632, 767
AvaI	CYCGRG	2 cut(s)	285, 691
AvaII	GGWCC	1 cut(s)	381
BaeGI	GKGCMC	2 cut(s)	188, 330
BamHI	GGATCC	3 cut(s)	359, 407, 440
BanII	GRGCYC	2 cut(s)	286, 732
BauI	CACGAG	1 cut(s)	206
BbsI	GAAGAC	1 cut(s)	650
Bbv12I	GWGCWC	2 cut(s)	201, 732
BbvI	GCAGC	2 cut(s)	86, 304
BccI	CCATC	2 cut(s)	419, 751
BceAI	ACGGC	1 cut(s)	96
BciT130I	CCWGG	3 cut(s)	118, 348, 584
BcnI	CCSGG	1 cut(s)	79
BcoDI	GTCTC	1 cut(s)	221
BcuI	ACTAGT	3 cut(s)	338, 386, 518
BfaI	CTAG	3 cut(s)	339, 387, 519
BfmI	CTRYAG	2 cut(s)	192, 475
BglII	AGATCT	1 cut(s)	210
BisI	GCNGC	3 cut(s)	75, 318, 667
BlpI	GCTNAGC	1 cut(s)	731
BlsI	GCNGC	3 cut(s)	76, 319, 668
BmcAI	AGTACT	1 cut(s)	523
Bme1390I	CCNGG	4 cut(s)	79, 118, 348, 584
Bme18I	GGWCC	1 cut(s)	381
BmeT110I	CYCGRG	2 cut(s)	285, 691
BmgT120I	GGNCC	3 cut(s)	381, 428, 461
BmiI	GGNNCC	6 cut(s)	6, 269, 361, 382, 409, 442
BmrFI	CCNGG	4 cut(s)	79, 118, 348, 584
BpiI	GAAGAC	1 cut(s)	650
BpmI	CTGGAG	2 cut(s)	117, 203
Bpu1102I	GCTNAGC	1 cut(s)	731
BpuEI	CTTGAG	3 cut(s)	137, 306, 746
BpuMI	CCSGG	1 cut(s)	79
BsaHI	GRCGYC	1 cut(s)	627
BsaJI	CCNNGG	3 cut(s)	330, 464, 631
BsaWI	WCCGGW	3 cut(s)	486, 683, 746
BsaXI	ACNNNNNCTCC	2 cut(s)	328, 358
Bsc4I	CCNNNNNNNGG	3 cut(s)	353, 437, 617
Bse118I	RCCGGY	1 cut(s)	486
Bse1I	ACTGG	3 cut(s)	229, 358, 400
BseAI	TCCGGA	1 cut(s)	746
BseBI	CCWGG	3 cut(s)	118, 348, 584
BseDI	CCNNGG	3 cut(s)	330, 464, 631
BseGI	GGATG	2 cut(s)	61, 743
BseLI	CCNNNNNNNGG	3 cut(s)	353, 437, 617
BseMII	CTCAG	2 cut(s)	645, 745
BseNI	ACTGG	3 cut(s)	229, 358, 400
BseRI	GAGGAG	1 cut(s)	487
BseSI	GKGCMC	2 cut(s)	188, 330
BseXI	GCAGC	2 cut(s)	86, 304
BseYI	CCCAGC	1 cut(s)	39
BshFI	GGCC	3 cut(s)	430, 463, 639
BshTI	ACCGGT	1 cut(s)	486
BsiHKAI	GWGCWC	2 cut(s)	201, 732
BsiHKCI	CYCGRG	2 cut(s)	285, 691
BsiSI	CCGG	4 cut(s)	78, 487, 684, 747
BslI	CCNNNNNNNGG	3 cut(s)	353, 437, 617
BsmAI	GTCTC	1 cut(s)	221
BsnI	GGCC	3 cut(s)	430, 463, 639
BsoBI	CYCGRG	2 cut(s)	285, 691
Bsp1286I	GDGCHC	5 cut(s)	188, 201, 286, 330, 732
Bsp13I	TCCGGA	1 cut(s)	746
Bsp143I	GATC	7 cut(s)	136, 157, 210, 359, 407, 440, 577
Bsp1720I	GCTNAGC	1 cut(s)	731
Bsp19I	CCATGG	1 cut(s)	330
BspACI	CCGC	1 cut(s)	666
BspANI	GGCC	3 cut(s)	430, 463, 639
BspCNI	CTCAG	2 cut(s)	646, 744
BspEI	TCCGGA	1 cut(s)	746
BspLI	GGNNCC	6 cut(s)	6, 269, 361, 382, 409, 442
BspMAI	CTGCAG	1 cut(s)	479
BspPI	GGATC	8 cut(s)	165, 354, 367, 402, 415, 435, 448, 585
BsrFI	RCCGGY	1 cut(s)	486
BsrI	ACTGG	3 cut(s)	229, 358, 400
BssAI	RCCGGY	1 cut(s)	486
BssECI	CCNNGG	3 cut(s)	330, 464, 631
BssMI	GATC	7 cut(s)	136, 157, 210, 359, 407, 440, 577
BssNI	GRCGYC	1 cut(s)	627
BssSI	CACGAG	1 cut(s)	206
BssT1I	CCWWGG	2 cut(s)	330, 631
Bst2BI	CACGAG	1 cut(s)	206
Bst2UI	CCWGG	3 cut(s)	118, 348, 584
Bst4CI	ACNGT	2 cut(s)	620, 707
Bst6I	CTCTTC	2 cut(s)	296, 603
BstACI	GRCGYC	1 cut(s)	627
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	3 cut(s)	654, 731, 765
BstDSI	CCRYGG	2 cut(s)	330, 464
BstF5I	GGATG	2 cut(s)	61, 743
BstKTI	GATC	7 cut(s)	139, 160, 213, 362, 410, 443, 580
BstMAI	GTCTC	1 cut(s)	221
BstMBI	GATC	7 cut(s)	136, 157, 210, 359, 407, 440, 577
BstMWI	GCNNNNNNNGC	1 cut(s)	672
BstNI	CCWGG	3 cut(s)	118, 348, 584
BstSCI	CCNGG	4 cut(s)	77, 116, 346, 582
BstSFI	CTRYAG	2 cut(s)	192, 475
BstSLI	GKGCMC	2 cut(s)	188, 330
BstV1I	GCAGC	2 cut(s)	86, 304
BstV2I	GAAGAC	1 cut(s)	650
BstX2I	RGATCY	5 cut(s)	157, 210, 359, 407, 440
BstYI	RGATCY	5 cut(s)	157, 210, 359, 407, 440
BsuRI	GGCC	3 cut(s)	430, 463, 639
BtgI	CCRYGG	2 cut(s)	330, 464
BtsCI	GGATG	2 cut(s)	61, 743
BtsI	GCAGTG	1 cut(s)	484
BtsIMutI	CAGTG	1 cut(s)	484
Cac8I	GCNNGC	1 cut(s)	432
Cfr10I	RCCGGY	1 cut(s)	486
Cfr13I	GGNCC	3 cut(s)	381, 428, 461
CsiI	ACCWGGT	1 cut(s)	116
Csp6I	GTAC	3 cut(s)	114, 351, 522
CspAI	ACCGGT	1 cut(s)	486
CviAII	CATG	3 cut(s)	331, 559, 613
CviQI	GTAC	3 cut(s)	114, 351, 522
DdeI	CTNAG	3 cut(s)	654, 731, 765
DpnI	GATC	7 cut(s)	138, 159, 212, 361, 409, 442, 579
DpnII	GATC	7 cut(s)	136, 157, 210, 359, 407, 440, 577
Eam1104I	CTCTTC	2 cut(s)	296, 603
EarI	CTCTTC	2 cut(s)	296, 603
Ecl136II	GAGCTC	1 cut(s)	730
Eco130I	CCWWGG	2 cut(s)	330, 631
Eco24I	GRGCYC	2 cut(s)	286, 732
Eco47I	GGWCC	1 cut(s)	381
Eco53kI	GAGCTC	1 cut(s)	730
Eco57I	CTGAAG	1 cut(s)	662
Eco88I	CYCGRG	2 cut(s)	285, 691
EcoICRI	GAGCTC	1 cut(s)	730
EcoRII	CCWGG	3 cut(s)	116, 346, 582
EcoT14I	CCWWGG	2 cut(s)	330, 631
EcoT38I	GRGCYC	2 cut(s)	286, 732
ErhI	CCWWGG	2 cut(s)	330, 631
FaeI	CATG	3 cut(s)	334, 562, 616
FaiI	YATR	5 cut(s)	234, 332, 560, 614, 672
FatI	CATG	3 cut(s)	330, 558, 612
FblI	GTMKAC	1 cut(s)	471
Fnu4HI	GCNGC	3 cut(s)	75, 318, 667
FokI	GGATG	2 cut(s)	68, 730
FriOI	GRGCYC	2 cut(s)	286, 732
Fsp4HI	GCNGC	3 cut(s)	75, 318, 667
FspBI	CTAG	3 cut(s)	339, 387, 519
GluI	GCNGC	3 cut(s)	75, 318, 667
GsaI	CCCAGC	1 cut(s)	43
GsuI	CTGGAG	2 cut(s)	117, 203
HaeIII	GGCC	3 cut(s)	430, 463, 639
HapII	CCGG	4 cut(s)	78, 487, 684, 747
Hin1I	GRCGYC	1 cut(s)	627
Hin1II	CATG	3 cut(s)	334, 562, 616
HincII	GTYRAC	2 cut(s)	472, 484
HindII	GTYRAC	2 cut(s)	472, 484
HinfI	GANTC	2 cut(s)	124, 147
HpaII	CCGG	4 cut(s)	78, 487, 684, 747
HphI	GGTGA	4 cut(s)	492, 572, 632, 767
Hpy166II	GTNNAC	3 cut(s)	384, 472, 484
Hpy188I	TCNGA	1 cut(s)	655
Hpy188III	TCNNGA	7 cut(s)	134, 206, 271, 287, 693, 725, 747
Hpy8I	GTNNAC	3 cut(s)	384, 472, 484
HpyAV	CCTTC	1 cut(s)	514
HpyCH4III	ACNGT	2 cut(s)	620, 707
HpyCH4IV	ACGT	3 cut(s)	276, 627, 717
HpyCH4V	TGCA	4 cut(s)	19, 309, 477, 616
HpyF10VI	GCNNNNNNNGC	1 cut(s)	672
HpyF3I	CTNAG	3 cut(s)	654, 731, 765
HpySE526I	ACGT	3 cut(s)	276, 627, 717
Hsp92I	GRCGYC	1 cut(s)	627
Hsp92II	CATG	3 cut(s)	334, 562, 616
Kpn2I	TCCGGA	1 cut(s)	746
Kzo9I	GATC	7 cut(s)	136, 157, 210, 359, 407, 440, 577
LmnI	GCTCC	2 cut(s)	28, 749
Lsp1109I	GCAGC	2 cut(s)	86, 304
MabI	ACCWGGT	1 cut(s)	116
MaeI	CTAG	3 cut(s)	339, 387, 519
MaeII	ACGT	3 cut(s)	276, 627, 717
MaeIII	GTNAC	2 cut(s)	698, 755
MalI	GATC	7 cut(s)	138, 159, 212, 361, 409, 442, 579
MboI	GATC	7 cut(s)	136, 157, 210, 359, 407, 440, 577
MboII	GAAGA	3 cut(s)	313, 590, 655
MflI	RGATCY	5 cut(s)	157, 210, 359, 407, 440
MhlI	GDGCHC	5 cut(s)	188, 201, 286, 330, 732
MluCI	AATT	3 cut(s)	373, 421, 454
MroI	TCCGGA	1 cut(s)	746
MroXI	GAANNNNTTC	2 cut(s)	340, 597
MseI	TTAA	2 cut(s)	180, 372
MspA1I	CMGCKG	2 cut(s)	223, 434
MspI	CCGG	4 cut(s)	78, 487, 684, 747
MspR9I	CCNGG	4 cut(s)	79, 118, 348, 584
MvaI	CCWGG	3 cut(s)	118, 348, 584
MwoI	GCNNNNNNNGC	1 cut(s)	672
NciI	CCSGG	1 cut(s)	79
NcoI	CCATGG	1 cut(s)	330
NdeII	GATC	7 cut(s)	136, 157, 210, 359, 407, 440, 577
NlaIII	CATG	3 cut(s)	334, 562, 616
NlaIV	GGNNCC	6 cut(s)	6, 269, 361, 382, 409, 442
NmuCI	GTSAC	1 cut(s)	755
PaeR7I	CTCGAG	1 cut(s)	285
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PdmI	GAANNNNTTC	2 cut(s)	340, 597
PfeI	GAWTC	2 cut(s)	124, 147
PflMI	CCANNNNNTGG	1 cut(s)	437
PinAI	ACCGGT	1 cut(s)	486
PkrI	GCNGC	3 cut(s)	76, 319, 668
PshBI	ATTAAT	1 cut(s)	372
Psp124BI	GAGCTC	1 cut(s)	732
Psp6I	CCWGG	3 cut(s)	116, 346, 582
PspFI	CCCAGC	1 cut(s)	39
PspGI	CCWGG	3 cut(s)	116, 346, 582
PspN4I	GGNNCC	6 cut(s)	6, 269, 361, 382, 409, 442
PspPI	GGNCC	3 cut(s)	381, 428, 461
PstI	CTGCAG	1 cut(s)	479
PsuI	RGATCY	5 cut(s)	157, 210, 359, 407, 440
PvuII	CAGCTG	2 cut(s)	223, 434
RsaI	GTAC	3 cut(s)	115, 352, 523
RsaNI	GTAC	3 cut(s)	114, 351, 522
SacI	GAGCTC	1 cut(s)	732
SalI	GTCGAC	1 cut(s)	470
SaqAI	TTAA	2 cut(s)	180, 372
SatI	GCNGC	3 cut(s)	75, 318, 667
Sau3AI	GATC	7 cut(s)	136, 157, 210, 359, 407, 440, 577
Sau96I	GGNCC	3 cut(s)	381, 428, 461
ScaI	AGTACT	1 cut(s)	523
ScrFI	CCNGG	4 cut(s)	79, 118, 348, 584
SduI	GDGCHC	5 cut(s)	188, 201, 286, 330, 732
SexAI	ACCWGGT	1 cut(s)	116
SfcI	CTRYAG	2 cut(s)	192, 475
Sfr274I	CTCGAG	1 cut(s)	285
SinI	GGWCC	1 cut(s)	381
SlaI	CTCGAG	1 cut(s)	285
SmlI	CTYRAG	4 cut(s)	152, 285, 321, 725
SmoI	CTYRAG	4 cut(s)	152, 285, 321, 725
SpeI	ACTAGT	3 cut(s)	338, 386, 518
Sse9I	AATT	3 cut(s)	373, 421, 454
SsiI	CCGC	1 cut(s)	666
SspMI	CTAG	3 cut(s)	339, 387, 519
SstI	GAGCTC	1 cut(s)	732
StyD4I	CCNGG	4 cut(s)	77, 116, 346, 582
StyI	CCWWGG	2 cut(s)	330, 631
TaaI	ACNGT	2 cut(s)	620, 707
TaiI	ACGT	3 cut(s)	279, 630, 720
TaqI	TCGA	4 cut(s)	51, 286, 414, 471
TasI	AATT	3 cut(s)	373, 421, 454
TatI	WGTACW	1 cut(s)	521
TauI	GCSGC	1 cut(s)	669
TfiI	GAWTC	2 cut(s)	124, 147
Tru1I	TTAA	2 cut(s)	180, 372
Tru9I	TTAA	2 cut(s)	180, 372
TscAI	CASTG	1 cut(s)	484
TseFI	GTSAC	1 cut(s)	755
TseI	GCWGC	2 cut(s)	74, 317
Tsp45I	GTSAC	1 cut(s)	755
TspDTI	ATGAA	2 cut(s)	314, 547
TspGWI	ACGGA	1 cut(s)	110
TspRI	CASTG	1 cut(s)	484
Van91I	CCANNNNNTGG	1 cut(s)	437
VpaK11BI	GGWCC	1 cut(s)	381
VspI	ATTAAT	1 cut(s)	372
XhoI	CTCGAG	1 cut(s)	285
XmiI	GTMKAC	1 cut(s)	471
XmnI	GAANNNNTTC	2 cut(s)	340, 597
XspI	CTAG	3 cut(s)	339, 387, 519
ZraI	GACGTC	1 cut(s)	628
ZrmI	AGTACT	1 cut(s)	523

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.