Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

9843023 .. 9844561

Gene Structure 1539 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G28180.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1107 bp

ATGGCAGCTATACCTTTAGGACTTGAACAGCGTGATGTTATCGGTATTTCAGCTACGGGTTCCGGCAAAACCGCGGCTTTTGTTTTGCCAATGTTGGCTTACATATCTAGGTTGCCACCAATGAGGGAAGAGAATCAGACAGAAGGTCCTTACGCTCTTGTTATGGTTCCTACACGGGAGCTTGCACATCAGATAGAAGAAGAGACGGTTAAGTTTTCGCGTTACTTGGGGTTCAAGGCGGTTTCTATCACTGGTTGGGAGTCAATAGAGAAACAAGCCTTGAAATTATCACAAGGATGTGAGATTGTGATTGCTACCCCTGGTCGATTGCTAGATTGCCTTGAGAGAAGGTACGTGGTGTTGAACCAATGTAACTATTTAGTTCTTGATGAAGCTGACCGGATGATTGACATGGATTTTGAGCCACAGGTCTCAGAAGTGTTAGATGAAAAAAAGATTTACAGAACTACGTATATGTTCAGTGCCACTATGCTTCTTAGTGTAGAGCGTCTCGCTAGAAAATTCTTGAGGAATCCTGTTGTGGTCACCATTGGAGAAACCACAAAGTTTATCACTCAACAAGTGATTATGACCAAAGAATCAGATAAGTTCTCTAGGTTAAAGAAACTGATTGACGATCTAGGTGATGATAAGACAGCGATAGTGTTTGTGAATACCAGGAACAAGGTTGATTACATTGTTAAGAATCTTGAAAAGGTAGGAAGGTGTCGTGTGACTACATTGCACGCAGGAAAGTCGCAAGAACAGAGAGATTATAGCTTAGAAGAATTCAAGAAAAAGAGATTTAACGTTCTTGTTACAACAGATGTTTTAGGCCGTGGGTTAGATATTCTTGACTTGGCACAAGTCATCAACTACGATATGCCTAACACAATGGATCTTTATACGCATAGGATTGGACGAACAGGGCGAGCAGGGAAGACAGGTGTTGCGACAACGTTCTTGACTCTTGAGGATAAAGATGTGTTTTATGGTTTGAAGCAGAAGCTTAATGAGTGTAATAGTTTGGTGCCACCTGAACTTGCGAGACATGAAGCCTCTAAGTTTAAACCAGGAACCTTTCCTGATAGATTCTCCCATTTTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

368

Amino Acids

41.84

Weight (kDa)

8.42

Isoelectric Point (pI)

29.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	2 - 116	1.6e-28	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	1030
AccII	CGCG	2 cut(s)	74, 220
AciI	CCGC	3 cut(s)	72, 74, 239
AclI	AACGTT	2 cut(s)	810, 959
AclWI	GGATC	1 cut(s)	906
AcsI	RAATTY	2 cut(s)	521, 788
AfaI	GTAC	1 cut(s)	353
AgsI	TTSAA	7 cut(s)	26, 235, 283, 364, 713, 793, 1000
AhdI	GACNNNNNGTC	1 cut(s)	144
AjnI	CCWGG	3 cut(s)	319, 677, 1072
AluBI	AGCT	6 cut(s)	8, 53, 181, 395, 780, 1009
AluI	AGCT	6 cut(s)	8, 53, 181, 395, 780, 1009
Alw26I	GTCTC	4 cut(s)	197, 436, 515, 1042
AlwI	GGATC	1 cut(s)	906
AoxI	GGCC	1 cut(s)	835
ApeKI	GCWGC	1 cut(s)	5
ApoI	RAATTY	2 cut(s)	521, 788
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AspS9I	GGNCC	1 cut(s)	146
AsuHPI	GGTGA	2 cut(s)	538, 656
AvaII	GGWCC	1 cut(s)	146
BanI	GGYRCC	1 cut(s)	1030
BbsI	GAAGAC	1 cut(s)	947
BbvI	GCAGC	1 cut(s)	17
BceAI	ACGGC	1 cut(s)	822
BcgI	CGANNNNNNTGC	2 cut(s)	738, 772
BciT130I	CCWGG	3 cut(s)	321, 679, 1074
BcoDI	GTCTC	4 cut(s)	197, 436, 515, 1042
BfaI	CTAG	5 cut(s)	108, 332, 516, 615, 641
BisI	GCNGC	2 cut(s)	6, 75
BlsI	GCNGC	2 cut(s)	7, 76
Bme1390I	CCNGG	3 cut(s)	321, 679, 1074
Bme18I	GGWCC	1 cut(s)	146
BmeRI	GACNNNNNGTC	1 cut(s)	144
BmgT120I	GGNCC	1 cut(s)	146
BmiI	GGNNCC	4 cut(s)	61, 168, 1032, 1078
BmrFI	CCNGG	3 cut(s)	321, 679, 1074
BpiI	GAAGAC	1 cut(s)	947
BpuEI	CTTGAG	3 cut(s)	362, 547, 992
BsaAI	YACGTR	2 cut(s)	355, 471
BsaI	GGTCTC	1 cut(s)	436
BsaJI	CCNNGG	3 cut(s)	72, 319, 838
BsaWI	WCCGGW	1 cut(s)	399
Bse1I	ACTGG	1 cut(s)	256
Bse3DI	GCAATG	1 cut(s)	740
BseBI	CCWGG	3 cut(s)	321, 679, 1074
BseDI	CCNNGG	3 cut(s)	72, 319, 838
BseGI	GGATG	2 cut(s)	302, 408
BseMI	GCAATG	1 cut(s)	740
BseMII	CTCAG	1 cut(s)	447
BseNI	ACTGG	1 cut(s)	256
BseXI	GCAGC	1 cut(s)	17
Bsh1236I	CGCG	2 cut(s)	74, 220
BshFI	GGCC	1 cut(s)	837
BshNI	GGYRCC	1 cut(s)	1030
BsiSI	CCGG	2 cut(s)	63, 400
BsmAI	GTCTC	4 cut(s)	197, 436, 515, 1042
BsmBI	CGTCTC	2 cut(s)	197, 515
BsnI	GGCC	1 cut(s)	837
Bso31I	GGTCTC	1 cut(s)	436
Bsp143I	GATC	2 cut(s)	637, 898
BspACI	CCGC	3 cut(s)	72, 74, 239
BspANI	GGCC	1 cut(s)	837
BspCNI	CTCAG	1 cut(s)	446
BspFNI	CGCG	2 cut(s)	74, 220
BspLI	GGNNCC	4 cut(s)	61, 168, 1032, 1078
BspPI	GGATC	1 cut(s)	906
BspT107I	GGYRCC	1 cut(s)	1030
BspTNI	GGTCTC	1 cut(s)	436
BsrDI	GCAATG	1 cut(s)	740
BsrI	ACTGG	1 cut(s)	256
BssECI	CCNNGG	3 cut(s)	72, 319, 838
BssMI	GATC	2 cut(s)	637, 898
Bst2UI	CCWGG	3 cut(s)	321, 679, 1074
Bst4CI	ACNGT	1 cut(s)	208
Bst6I	CTCTTC	2 cut(s)	123, 195
BstBAI	YACGTR	2 cut(s)	355, 471
BstC8I	GCNNGC	3 cut(s)	183, 747, 933
BstDEI	CTNAG	4 cut(s)	433, 497, 781, 1062
BstDSI	CCRYGG	2 cut(s)	72, 838
BstEII	GGTNACC	1 cut(s)	544
BstF5I	GGATG	2 cut(s)	302, 408
BstFNI	CGCG	2 cut(s)	74, 220
BstKTI	GATC	2 cut(s)	640, 901
BstMAI	GTCTC	4 cut(s)	197, 436, 515, 1042
BstMBI	GATC	2 cut(s)	637, 898
BstNI	CCWGG	3 cut(s)	321, 679, 1074
BstPI	GGTNACC	1 cut(s)	544
BstSCI	CCNGG	3 cut(s)	319, 677, 1072
BstSNI	TACGTA	1 cut(s)	471
BstUI	CGCG	2 cut(s)	74, 220
BstV1I	GCAGC	1 cut(s)	17
BstV2I	GAAGAC	1 cut(s)	947
BstX2I	RGATCY	1 cut(s)	898
BstYI	RGATCY	1 cut(s)	898
BsuRI	GGCC	1 cut(s)	837
BtgI	CCRYGG	2 cut(s)	72, 838
BtsCI	GGATG	2 cut(s)	302, 408
BtsIMutI	CAGTG	2 cut(s)	249, 487
Cac8I	GCNNGC	3 cut(s)	183, 747, 933
Cfr13I	GGNCC	1 cut(s)	146
Cfr42I	CCGCGG	1 cut(s)	75
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	1 cut(s)	352
CviAII	CATG	2 cut(s)	412, 1052
CviQI	GTAC	1 cut(s)	352
DdeI	CTNAG	4 cut(s)	433, 497, 781, 1062
DpnI	GATC	2 cut(s)	639, 900
DpnII	GATC	2 cut(s)	637, 898
DraI	TTTAAA	1 cut(s)	1069
DriI	GACNNNNNGTC	1 cut(s)	144
Eam1104I	CTCTTC	2 cut(s)	123, 195
Eam1105I	GACNNNNNGTC	1 cut(s)	144
EarI	CTCTTC	2 cut(s)	123, 195
Eco105I	TACGTA	1 cut(s)	471
Eco31I	GGTCTC	1 cut(s)	436
Eco47I	GGWCC	1 cut(s)	146
Eco91I	GGTNACC	1 cut(s)	544
EcoO109I	RGGNCCY	1 cut(s)	146
EcoO65I	GGTNACC	1 cut(s)	544
EcoRI	GAATTC	1 cut(s)	788
EcoRII	CCWGG	3 cut(s)	319, 677, 1072
Esp3I	CGTCTC	2 cut(s)	197, 515
FaeI	CATG	2 cut(s)	415, 1055
FatI	CATG	2 cut(s)	411, 1051
Fnu4HI	GCNGC	2 cut(s)	6, 75
FokI	GGATG	2 cut(s)	309, 415
Fsp4HI	GCNGC	2 cut(s)	6, 75
FspBI	CTAG	5 cut(s)	108, 332, 516, 615, 641
GluI	GCNGC	2 cut(s)	6, 75
HaeIII	GGCC	1 cut(s)	837
HapII	CCGG	2 cut(s)	63, 400
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	2 cut(s)	415, 1055
HindIII	AAGCTT	1 cut(s)	1007
HinfI	GANTC	7 cut(s)	133, 260, 532, 599, 706, 967, 1092
HpaII	CCGG	2 cut(s)	63, 400
HphI	GGTGA	2 cut(s)	538, 656
Hpy188I	TCNGA	4 cut(s)	138, 192, 436, 604
Hpy188III	TCNNGA	8 cut(s)	386, 526, 710, 793, 854, 964, 971, 1085
HpyAV	CCTTC	3 cut(s)	137, 342, 717
HpyCH4III	ACNGT	1 cut(s)	208
HpyCH4IV	ACGT	4 cut(s)	354, 470, 810, 959
HpyCH4V	TGCA	2 cut(s)	185, 745
HpyF3I	CTNAG	4 cut(s)	433, 497, 781, 1062
HpySE526I	ACGT	4 cut(s)	354, 470, 810, 959
Hsp92II	CATG	2 cut(s)	415, 1055
KspI	CCGCGG	1 cut(s)	75
Kzo9I	GATC	2 cut(s)	637, 898
LmnI	GCTCC	1 cut(s)	178
Lsp1109I	GCAGC	1 cut(s)	17
MaeI	CTAG	5 cut(s)	108, 332, 516, 615, 641
MaeII	ACGT	4 cut(s)	354, 470, 810, 959
MaeIII	GTNAC	5 cut(s)	221, 371, 544, 733, 817
MalI	GATC	2 cut(s)	639, 900
MboI	GATC	2 cut(s)	637, 898
MboII	GAAGA	5 cut(s)	140, 209, 212, 797, 952
MflI	RGATCY	1 cut(s)	898
MluCI	AATT	3 cut(s)	284, 521, 788
MlyI	GAGTC	2 cut(s)	269, 961
MnlI	CCTC	4 cut(s)	117, 522, 967, 1069
MseI	TTAA	6 cut(s)	210, 620, 702, 807, 1011, 1068
MslI	CAYNNNNRTG	1 cut(s)	295
MspA1I	CMGCKG	1 cut(s)	74
MspI	CCGG	2 cut(s)	63, 400
MspR9I	CCNGG	3 cut(s)	321, 679, 1074
MssI	GTTTAAAC	1 cut(s)	1069
MvaI	CCWGG	3 cut(s)	321, 679, 1074
MvnI	CGCG	2 cut(s)	74, 220
NdeII	GATC	2 cut(s)	637, 898
NlaIII	CATG	2 cut(s)	415, 1055
NlaIV	GGNNCC	4 cut(s)	61, 168, 1032, 1078
NmuCI	GTSAC	2 cut(s)	544, 733
PcsI	WCGNNNNNNNCGW	1 cut(s)	928
PfeI	GAWTC	5 cut(s)	133, 532, 599, 706, 1092
PkrI	GCNGC	2 cut(s)	7, 76
PleI	GAGTC	2 cut(s)	268, 961
PmeI	GTTTAAAC	1 cut(s)	1069
PpsI	GAGTC	2 cut(s)	268, 961
Ppu21I	YACGTR	2 cut(s)	355, 471
PpuMI	RGGWCCY	1 cut(s)	146
Psp1406I	AACGTT	2 cut(s)	810, 959
Psp5II	RGGWCCY	1 cut(s)	146
Psp6I	CCWGG	3 cut(s)	319, 677, 1072
PspEI	GGTNACC	1 cut(s)	544
PspGI	CCWGG	3 cut(s)	319, 677, 1072
PspN4I	GGNNCC	4 cut(s)	61, 168, 1032, 1078
PspPI	GGNCC	1 cut(s)	146
PspPPI	RGGWCCY	1 cut(s)	146
PsuI	RGATCY	1 cut(s)	898
RsaI	GTAC	1 cut(s)	353
RsaNI	GTAC	1 cut(s)	352
RseI	CAYNNNNRTG	1 cut(s)	295
SacII	CCGCGG	1 cut(s)	75
SaqAI	TTAA	6 cut(s)	210, 620, 702, 807, 1011, 1068
SatI	GCNGC	2 cut(s)	6, 75
Sau3AI	GATC	2 cut(s)	637, 898
Sau96I	GGNCC	1 cut(s)	146
SchI	GAGTC	2 cut(s)	269, 961
ScrFI	CCNGG	3 cut(s)	321, 679, 1074
Sfr303I	CCGCGG	1 cut(s)	75
SgrBI	CCGCGG	1 cut(s)	75
SinI	GGWCC	1 cut(s)	146
SmiMI	CAYNNNNRTG	1 cut(s)	295
SmlI	CTYRAG	3 cut(s)	341, 526, 971
SmoI	CTYRAG	3 cut(s)	341, 526, 971
SnaBI	TACGTA	1 cut(s)	471
Sse9I	AATT	3 cut(s)	284, 521, 788
SsiI	CCGC	3 cut(s)	72, 74, 239
SspMI	CTAG	5 cut(s)	108, 332, 516, 615, 641
StyD4I	CCNGG	3 cut(s)	319, 677, 1072
TaaI	ACNGT	1 cut(s)	208
TaiI	ACGT	4 cut(s)	357, 473, 813, 962
TaqI	TCGA	1 cut(s)	325
TasI	AATT	3 cut(s)	284, 521, 788
TauI	GCSGC	1 cut(s)	77
TfiI	GAWTC	5 cut(s)	133, 532, 599, 706, 1092
Tru1I	TTAA	6 cut(s)	210, 620, 702, 807, 1011, 1068
Tru9I	TTAA	6 cut(s)	210, 620, 702, 807, 1011, 1068
TscAI	CASTG	2 cut(s)	256, 487
TseFI	GTSAC	2 cut(s)	544, 733
TseI	GCWGC	1 cut(s)	5
Tsp45I	GTSAC	2 cut(s)	544, 733
TspDTI	ATGAA	3 cut(s)	405, 462, 1068
TspRI	CASTG	2 cut(s)	256, 487
VpaK11BI	GGWCC	1 cut(s)	146
XapI	RAATTY	2 cut(s)	521, 788
XspI	CTAG	5 cut(s)	108, 332, 516, 615, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.