Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

34974907 .. 34975965

Gene Structure 1059 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG210900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1059 bp

ATGGTGGCCATTCCTCTGGGCCTGCAACAGCGTGATGTTATTGGCATTGCGGAGACAGGTTCTGGTAAGACTGCTGCCTTTGTTCTTCCTATGTTGACATATATTTCTAGGTTGCCTCCTATTAGTGAAGAGAATGAGGCTGAAGGGCCATTTGCTGTTGTTATGGCACCTACTCGTGAGCTTGCGCAGCAGATTGAGGAAGAGACCATGAAGTTTGCGCATTGCTTGGGTATTAAAGTGGTTTCTATTGTTGGTGGGCAGTCAATTGAGGAACACGGTTTTAAGATTAGGCAAGGATGTGAGGTTGTTATTGCTACGCCGGGGCAGTTGATTGATTGTTTGGAGAGGCGTTATGCTGTTTTGAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGATAGGATGATTGATATGGGGTTTGAGCCGCAGGTTGTAGGTGTTTTGGATGCAATGCCTTCCAGCAATTTCAAACCTGAGAATGAGGATGAAGAGCTTGATGACAACAAGATTTACAGAACCACTTATATGTTTAGTGCCACCATGCCTCCTGCGGTGGAGCGCCTTGCTCATAAGTATTTGAGGAATCCTGTTATGGTTACAATTGGCATAGCTGGAAAGACCACTGATTTGATCACTCAGAATGTGGTCTGGAGTAAGGAAGCAGAGAAGTTTGAGAGGCTAAAGAGATTGCTTGACGAACTTGGTGAGAAGACTGCTATTGTGTTTGTTAACACCAAGAAAACTGCTGGTTATGTAGCCAAGAGTTTGGATAAGAATGGATATCGTGTGACCACTTTGCATGGGGGGAAATCACAAGACCAGAGAGAAATTAGCCTTGAAGGTTTTAGGACCAGGAGATACAATGTCCTTGTTGCAACGGATGTTGCAGGACGTGGTATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCTCAAGTATTGAAACATACACCCATCATATTGGACGTACTGGACGTGCAGGGAAGACTGGTGTAGCCACATCATTGTTGACAATTCACGACACTGATGTCTTCTATGATCTCAAGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

352

Amino Acids

39.05

Weight (kDa)

5.5

Isoelectric Point (pI)

37.25

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	3 - 187	4.6e-42	DEAD/DEAH box helicase
Helicase_C	PF00271	222 - 331	3.7e-33	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1037
Acc16I	TGCGCA	2 cut(s)	186, 219
Acc36I	ACCTGC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	3 cut(s)	50, 425, 551
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	979
AgsI	TTSAA	4 cut(s)	364, 469, 839, 953
AjiI	CACGTC	2 cut(s)	893, 986
AjnI	CCWGG	1 cut(s)	851
AluBI	AGCT	3 cut(s)	181, 493, 611
AluI	AGCT	3 cut(s)	181, 493, 611
Alw26I	GTCTC	2 cut(s)	47, 197
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	4 cut(s)	6, 19, 146, 915
ApeKI	GCWGC	2 cut(s)	74, 187
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
AseI	ATTAAT	1 cut(s)	927
AspLEI	GCGC	3 cut(s)	187, 220, 561
AspS9I	GGNCC	4 cut(s)	19, 146, 849, 916
AsuC2I	CCSGG	1 cut(s)	321
AsuHPI	GGTGA	1 cut(s)	716
AvaII	GGWCC	1 cut(s)	849
BalI	TGGCCA	1 cut(s)	8
BanI	GGYRCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	174
BbsI	GAAGAC	3 cut(s)	716, 1001, 1033
BbvI	GCAGC	2 cut(s)	61, 199
BccI	CCATC	1 cut(s)	972
BciT130I	CCWGG	1 cut(s)	853
BclI	TGATCA	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	47, 197
BfaI	CTAG	1 cut(s)	108
BfoI	RGCGCY	1 cut(s)	562
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	3 cut(s)	75, 188, 425
BlsI	GCNGC	3 cut(s)	76, 189, 426
Bme1390I	CCNGG	2 cut(s)	321, 853
Bme18I	GGWCC	1 cut(s)	849
BmgBI	CACGTC	2 cut(s)	893, 986
BmgT120I	GGNCC	4 cut(s)	19, 146, 849, 916
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	2 cut(s)	321, 853
BmsI	GCATC	1 cut(s)	436
BpiI	GAAGAC	3 cut(s)	716, 1001, 1033
BpmI	CTGGAG	1 cut(s)	670
BpuEI	CTTGAG	2 cut(s)	928, 1037
BpuMI	CCSGG	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bse1I	ACTGG	2 cut(s)	985, 1003
Bse3DI	GCAATG	3 cut(s)	45, 220, 456
BseBI	CCWGG	1 cut(s)	853
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	5 cut(s)	302, 408, 451, 490, 886
BseMI	GCAATG	3 cut(s)	45, 220, 456
BseMII	CTCAG	2 cut(s)	465, 650
BseNI	ACTGG	2 cut(s)	985, 1003
BseXI	GCAGC	2 cut(s)	61, 199
BsgI	GTGCAG	1 cut(s)	1008
BshFI	GGCC	4 cut(s)	8, 21, 148, 917
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	320
BsmAI	GTCTC	2 cut(s)	47, 197
BsnI	GGCC	4 cut(s)	8, 21, 148, 917
Bso31I	GGTCTC	1 cut(s)	197
Bsp143I	GATC	2 cut(s)	630, 1048
BspACI	CCGC	3 cut(s)	50, 425, 551
BspANI	GGCC	4 cut(s)	8, 21, 148, 917
BspCNI	CTCAG	2 cut(s)	466, 649
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	418
BspQI	GCTCTTC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	3 cut(s)	45, 220, 456
BsrI	ACTGG	2 cut(s)	985, 1003
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	2 cut(s)	630, 1048
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	1 cut(s)	853
Bst4CI	ACNGT	1 cut(s)	278
Bst6I	CTCTTC	3 cut(s)	123, 195, 483
BstC8I	GCNNGC	2 cut(s)	23, 183
BstDEI	CTNAG	2 cut(s)	474, 636
BstF5I	GGATG	5 cut(s)	302, 408, 451, 490, 886
BstH2I	RGCGCY	1 cut(s)	562
BstHHI	GCGC	3 cut(s)	187, 220, 561
BstKTI	GATC	2 cut(s)	633, 1051
BstMAI	GTCTC	2 cut(s)	47, 197
BstMBI	GATC	2 cut(s)	630, 1048
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	1 cut(s)	853
BstSCI	CCNGG	2 cut(s)	319, 851
BstV1I	GCAGC	2 cut(s)	61, 199
BstV2I	GAAGAC	3 cut(s)	716, 1001, 1033
BstXI	CCANNNNNNTGG	3 cut(s)	16, 766, 971
BsuRI	GGCC	4 cut(s)	8, 21, 148, 917
BtrI	CACGTC	2 cut(s)	893, 986
BtsCI	GGATG	5 cut(s)	302, 408, 451, 490, 886
BtsIMutI	CAGTG	3 cut(s)	374, 621, 1032
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	23, 183
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	3 cut(s)	187, 220, 561
Cfr13I	GGNCC	4 cut(s)	19, 146, 849, 916
Csp6I	GTAC	1 cut(s)	978
CviAII	CATG	4 cut(s)	208, 541, 800, 920
CviQI	GTAC	1 cut(s)	978
DdeI	CTNAG	2 cut(s)	474, 636
DpnI	GATC	2 cut(s)	632, 1050
DpnII	GATC	2 cut(s)	630, 1048
DrdI	GACNNNNNNGTC	1 cut(s)	1037
DseDI	GACNNNNNNGTC	1 cut(s)	1037
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	123, 195, 483
EarI	CTCTTC	3 cut(s)	123, 195, 483
Eco31I	GGTCTC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	782
Eco47I	GGWCC	1 cut(s)	849
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	1 cut(s)	851
EcoRV	GATATC	1 cut(s)	782
FaeI	CATG	4 cut(s)	211, 544, 803, 923
FatI	CATG	4 cut(s)	207, 540, 799, 919
FbaI	TGATCA	1 cut(s)	630
Fnu4HI	GCNGC	3 cut(s)	75, 188, 425
FokI	GGATG	5 cut(s)	309, 415, 458, 497, 893
Fsp4HI	GCNGC	3 cut(s)	75, 188, 425
FspBI	CTAG	1 cut(s)	108
FspI	TGCGCA	2 cut(s)	186, 219
GlaI	GCGC	3 cut(s)	186, 219, 560
GluI	GCNGC	3 cut(s)	75, 188, 425
GsuI	CTGGAG	1 cut(s)	670
HaeII	RGCGCY	1 cut(s)	562
HaeIII	GGCC	4 cut(s)	8, 21, 148, 917
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	3 cut(s)	187, 220, 561
Hin1II	CATG	4 cut(s)	211, 544, 803, 923
Hin6I	GCGC	3 cut(s)	185, 218, 559
HinP1I	GCGC	3 cut(s)	185, 218, 559
HincII	GTYRAC	3 cut(s)	96, 730, 1020
HindII	GTYRAC	3 cut(s)	96, 730, 1020
HinfI	GANTC	2 cut(s)	364, 583
HpaI	GTTAAC	1 cut(s)	730
HpaII	CCGG	1 cut(s)	320
HphI	GGTGA	1 cut(s)	716
Hpy166II	GTNNAC	3 cut(s)	96, 730, 1020
Hpy188I	TCNGA	1 cut(s)	639
Hpy188III	TCNNGA	4 cut(s)	176, 386, 649, 1028
Hpy8I	GTNNAC	3 cut(s)	96, 730, 1020
HpyAV	CCTTC	3 cut(s)	137, 465, 833
HpyCH4III	ACNGT	1 cut(s)	278
HpyCH4IV	ACGT	3 cut(s)	892, 976, 985
HpyCH4V	TGCA	7 cut(s)	25, 372, 449, 799, 875, 887, 989
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	474, 636
HpySE526I	ACGT	3 cut(s)	892, 976, 985
Hsp92II	CATG	4 cut(s)	211, 544, 803, 923
HspAI	GCGC	3 cut(s)	185, 218, 559
Ksp22I	TGATCA	1 cut(s)	630
KspAI	GTTAAC	1 cut(s)	730
Kzo9I	GATC	2 cut(s)	630, 1048
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	1 cut(s)	556
Lsp1109I	GCAGC	2 cut(s)	61, 199
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	108
MaeII	ACGT	3 cut(s)	892, 976, 985
MaeIII	GTNAC	2 cut(s)	595, 787
MalI	GATC	2 cut(s)	632, 1050
MboI	GATC	2 cut(s)	630, 1048
MboII	GAAGA	7 cut(s)	77, 140, 212, 500, 721, 1006, 1033
MfeI	CAATTG	2 cut(s)	264, 600
MlsI	TGGCCA	1 cut(s)	8
MluCI	AATT	8 cut(s)	264, 373, 463, 600, 828, 924, 928, 1023
MluNI	TGGCCA	1 cut(s)	8
Mox20I	TGGCCA	1 cut(s)	8
MscI	TGGCCA	1 cut(s)	8
MseI	TTAA	4 cut(s)	234, 282, 729, 927
MslI	CAYNNNNRTG	1 cut(s)	524
Msp20I	TGGCCA	1 cut(s)	8
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	2 cut(s)	321, 853
MunI	CAATTG	2 cut(s)	264, 600
MvaI	CCWGG	1 cut(s)	853
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	2 cut(s)	630, 1048
NlaIII	CATG	4 cut(s)	211, 544, 803, 923
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	787
NsbI	TGCGCA	2 cut(s)	186, 219
PciSI	GCTCTTC	1 cut(s)	483
PcsI	WCGNNNNNNNCGW	1 cut(s)	982
PfeI	GAWTC	2 cut(s)	364, 583
PkrI	GCNGC	3 cut(s)	76, 189, 426
PshBI	ATTAAT	1 cut(s)	927
Psp6I	CCWGG	1 cut(s)	851
PspGI	CCWGG	1 cut(s)	851
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	19, 146, 849, 916
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	979
RsaNI	GTAC	1 cut(s)	978
RseI	CAYNNNNRTG	1 cut(s)	524
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	4 cut(s)	234, 282, 729, 927
SatI	GCNGC	3 cut(s)	75, 188, 425
Sau3AI	GATC	2 cut(s)	630, 1048
Sau96I	GGNCC	4 cut(s)	19, 146, 849, 916
ScrFI	CCNGG	2 cut(s)	321, 853
SfaNI	GCATC	1 cut(s)	436
SinI	GGWCC	1 cut(s)	849
SmiMI	CAYNNNNRTG	1 cut(s)	524
SmlI	CTYRAG	2 cut(s)	943, 1052
SmoI	CTYRAG	2 cut(s)	943, 1052
Sse9I	AATT	8 cut(s)	264, 373, 463, 600, 828, 924, 928, 1023
SsiI	CCGC	3 cut(s)	50, 425, 551
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	2 cut(s)	319, 851
TaaI	ACNGT	1 cut(s)	278
TaiI	ACGT	3 cut(s)	895, 979, 988
TasI	AATT	8 cut(s)	264, 373, 463, 600, 828, 924, 928, 1023
TauI	GCSGC	1 cut(s)	427
TfiI	GAWTC	2 cut(s)	364, 583
Tru1I	TTAA	4 cut(s)	234, 282, 729, 927
Tru9I	TTAA	4 cut(s)	234, 282, 729, 927
TscAI	CASTG	3 cut(s)	374, 628, 1039
TseFI	GTSAC	1 cut(s)	787
TseI	GCWGC	2 cut(s)	74, 187
Tsp45I	GTSAC	1 cut(s)	787
TspDTI	ATGAA	2 cut(s)	224, 501
TspGWI	ACGGA	1 cut(s)	893
TspRI	CASTG	3 cut(s)	374, 628, 1039
VpaK11BI	GGWCC	1 cut(s)	849
VspI	ATTAAT	1 cut(s)	927
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.