Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

35280363 .. 35281727

Gene Structure 1365 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G017840.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1320 bp

ATGAGAGTGGATCGGCATTGGACTGATAAGAAGCTGGAGGAGATGACTGAGAGGGACTGGAGGATATTCCGAGAGGACTTTAATATATCCTACAAAGGGTCTAGGATTCCTCGCCCTATGAGGAGTTGGGTTGAGAGTGGATTGAGTACGGAGCTGCTCAAGGCTGTGGAGAGGGCTGGTTATAAGAAGCCTTCTCCCATTCAGATGGCTGCCATTCCTCTGGGCCTGCACCAGCGTGACCTTATCAGCATTGCGGAGACAGGTTCTGGTAAGACTGCTGCCTTTGTTCTTCCTGTGTTGACATATATTTCTAGGTTGCCTCCTATTAGTGAAGAGAATGAGGCTGAAGGGCCATTTGCTGTTGTTATGGCACCTACTCGTGAGCTTGCGCAGCAGATTGAGGAAGAGACCGTGAAGTTTGCGCATTACTTGGGTATTAAAGTGGTTTCTATTGTTGGTGGGCAGTCAATTGAGGAGCAGGGTTTTAAGATTAGGCAAGGATGTGAGGTTGTTATTGCTACGCCGGGGCGGTTGATTGATTGTTTGGAGAGGCGTTATGCTGTTTTGAATCAGTGCAATTTTGTTGTTCTTGATGAGGCTGATAGGATGATTGATATGGGGTTTGAGCCGCAGGTTTTAGGTGTTTTGGATGCAATGCCTTCCAGCAATTTCAAACCTGAGAATGAGGATGAAGAGCTTGATGACAAGAAGATTTACAGAACCACTTATATGTTTAGTGCCACCATGCCTCCTGCGGTGGAGCATCTTGCTCGGAAGTATTTGAGGAATCCTGTTGTGGTTACAATTGGCACAGCAGGAAAGACCACTGATTTGATCACTCAGAATGTGGTCTGGAGTAAGGATGCAGAGAAGTTTGAGAGGCTAAAGAGATTGCTTGATGAACCTGGTGATAAGACTGCTATTGTGTTTGTTAACACCAAGAAAACTGCTAATTATGTAGCCAAGAGTTTGGATAAGAATGGATATCGTGTGACCACTTTGCATGGGGGGAAATCACAAGACCAGAGAGAAATTAGCCTTGAAGGTTTTAGGACCAGTTGTTGCAACGGATGTTGCAGGACGTGTATTGAAACATACACCCATCGTATTGGACGTGCTGGACGTGCAGGGAAGACTGGTGTAGCCACATCATTGTTGACAATTCACGACACTGATGTCTTCTATGATCTCAAGCAGATGCTCATTCAGAGTAACAGTCATGTTCCTCCTGAACTGGCAAAACATGAAGCCTTGAAATCCAAGCCTGGTTCTATTCCTGATAGGCCACCTAGACGTAATGACACTATCTTTATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

439

Amino Acids

49.48

Weight (kDa)

8.02

Isoelectric Point (pI)

38.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	65 - 254	1.4e-44	DEAD/DEAH box helicase
Helicase_C	PF00271	290 - 356	1.1e-09	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	183
AasI	GACNNNNNNGTC	1 cut(s)	1175
Acc16I	TGCGCA	2 cut(s)	390, 423
Acc36I	ACCTGC	1 cut(s)	622
AccB1I	GGYRCC	1 cut(s)	370
AciI	CCGC	4 cut(s)	254, 529, 629, 755
AclWI	GGATC	1 cut(s)	18
AcuI	CTGAAG	1 cut(s)	366
AfaI	GTAC	1 cut(s)	148
AfiI	CCNNNNNNNGG	1 cut(s)	96
AflIII	ACRYGT	1 cut(s)	1082
AgsI	TTSAA	5 cut(s)	568, 673, 1043, 1091, 1255
AjiI	CACGTC	3 cut(s)	1083, 1115, 1124
AjnI	CCWGG	2 cut(s)	904, 1264
AleI	CACNNNNGTG	1 cut(s)	234
AluBI	AGCT	4 cut(s)	34, 154, 385, 697
AluI	AGCT	4 cut(s)	34, 154, 385, 697
Alw26I	GTCTC	2 cut(s)	251, 401
AlwI	GGATC	1 cut(s)	18
AlwNI	CAGNNNCTG	1 cut(s)	266
AoxI	GGCC	3 cut(s)	223, 350, 1283
ApeKI	GCWGC	4 cut(s)	154, 209, 278, 391
ArsI	GACNNNNNNTTYG	2 cut(s)	814, 846
AspLEI	GCGC	2 cut(s)	391, 424
AspS9I	GGNCC	3 cut(s)	223, 350, 1053
AsuC2I	CCSGG	1 cut(s)	525
AsuHPI	GGTGA	1 cut(s)	920
AvaII	GGWCC	1 cut(s)	1053
BanI	GGYRCC	1 cut(s)	370
BauI	CACGAG	1 cut(s)	378
BbsI	GAAGAC	2 cut(s)	1139, 1171
BbvI	GCAGC	4 cut(s)	141, 196, 265, 403
BccI	CCATC	2 cut(s)	199, 1110
BcgI	CGANNNNNNTGC	2 cut(s)	752, 786
BciT130I	CCWGG	2 cut(s)	906, 1266
BclI	TGATCA	1 cut(s)	834
BcnI	CCSGG	1 cut(s)	525
BcoDI	GTCTC	2 cut(s)	251, 401
BfaI	CTAG	3 cut(s)	102, 312, 1290
BfuAI	ACCTGC	1 cut(s)	622
BisI	GCNGC	5 cut(s)	155, 210, 279, 392, 629
BlsI	GCNGC	5 cut(s)	156, 211, 280, 393, 630
Bme1390I	CCNGG	3 cut(s)	525, 906, 1266
Bme18I	GGWCC	1 cut(s)	1053
BmgBI	CACGTC	3 cut(s)	1083, 1115, 1124
BmgT120I	GGNCC	3 cut(s)	223, 350, 1053
BmiI	GGNNCC	1 cut(s)	372
BmrFI	CCNGG	3 cut(s)	525, 906, 1266
BmsI	GCATC	4 cut(s)	640, 772, 853, 1188
BpiI	GAAGAC	2 cut(s)	1139, 1171
BpmI	CTGGAG	3 cut(s)	56, 79, 874
BpuEI	CTTGAG	2 cut(s)	143, 1175
BpuMI	CCSGG	1 cut(s)	525
BsaI	GGTCTC	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	524
BsaXI	ACNNNNNCTCC	2 cut(s)	733, 763
Bsc4I	CCNNNNNNNGG	1 cut(s)	96
Bse1I	ACTGG	4 cut(s)	62, 1056, 1141, 1239
Bse3DI	GCAATG	2 cut(s)	249, 660
BseBI	CCWGG	2 cut(s)	906, 1266
BseDI	CCNNGG	1 cut(s)	524
BseGI	GGATG	6 cut(s)	506, 612, 655, 694, 868, 1076
BseLI	CCNNNNNNNGG	1 cut(s)	96
BseMI	GCAATG	2 cut(s)	249, 660
BseMII	CTCAG	3 cut(s)	39, 669, 854
BseNI	ACTGG	4 cut(s)	62, 1056, 1141, 1239
BseRI	GAGGAG	3 cut(s)	53, 136, 488
BseXI	GCAGC	4 cut(s)	141, 196, 265, 403
BsgI	GTGCAG	2 cut(s)	212, 1146
BshFI	GGCC	3 cut(s)	225, 352, 1285
BshNI	GGYRCC	1 cut(s)	370
BsiSI	CCGG	1 cut(s)	524
BslFI	GGGAC	1 cut(s)	68
BslI	CCNNNNNNNGG	1 cut(s)	96
BsmAI	GTCTC	2 cut(s)	251, 401
BsmFI	GGGAC	1 cut(s)	68
BsnI	GGCC	3 cut(s)	225, 352, 1285
Bso31I	GGTCTC	1 cut(s)	401
Bsp143I	GATC	3 cut(s)	10, 834, 1186
BspACI	CCGC	4 cut(s)	254, 529, 629, 755
BspANI	GGCC	3 cut(s)	225, 352, 1285
BspCNI	CTCAG	3 cut(s)	40, 670, 853
BspLI	GGNNCC	1 cut(s)	372
BspMI	ACCTGC	1 cut(s)	622
BspPI	GGATC	1 cut(s)	18
BspQI	GCTCTTC	1 cut(s)	687
BspT107I	GGYRCC	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	401
BsrDI	GCAATG	2 cut(s)	249, 660
BsrI	ACTGG	4 cut(s)	62, 1056, 1141, 1239
BssECI	CCNNGG	1 cut(s)	524
BssMI	GATC	3 cut(s)	10, 834, 1186
BssSI	CACGAG	1 cut(s)	378
Bst2BI	CACGAG	1 cut(s)	378
Bst2UI	CCWGG	2 cut(s)	906, 1266
Bst4CI	ACNGT	2 cut(s)	412, 1217
Bst6I	CTCTTC	3 cut(s)	327, 399, 687
BstC8I	GCNNGC	2 cut(s)	227, 387
BstDEI	CTNAG	3 cut(s)	48, 678, 840
BstF5I	GGATG	6 cut(s)	506, 612, 655, 694, 868, 1076
BstHHI	GCGC	2 cut(s)	391, 424
BstKTI	GATC	3 cut(s)	13, 837, 1189
BstMAI	GTCTC	2 cut(s)	251, 401
BstMBI	GATC	3 cut(s)	10, 834, 1186
BstMWI	GCNNNNNNNGC	2 cut(s)	391, 1124
BstNI	CCWGG	2 cut(s)	906, 1266
BstSCI	CCNGG	3 cut(s)	523, 904, 1264
BstV1I	GCAGC	4 cut(s)	141, 196, 265, 403
BstV2I	GAAGAC	2 cut(s)	1139, 1171
BstXI	CCANNNNNNTGG	4 cut(s)	205, 220, 970, 1109
BsuRI	GGCC	3 cut(s)	225, 352, 1285
BtrI	CACGTC	3 cut(s)	1083, 1115, 1124
BtsCI	GGATG	6 cut(s)	506, 612, 655, 694, 868, 1076
BtsIMutI	CAGTG	3 cut(s)	578, 825, 1170
BveI	ACCTGC	1 cut(s)	622
Cac8I	GCNNGC	2 cut(s)	227, 387
CaiI	CAGNNNCTG	1 cut(s)	266
CfoI	GCGC	2 cut(s)	391, 424
Cfr13I	GGNCC	3 cut(s)	223, 350, 1053
CsiI	ACCWGGT	1 cut(s)	904
Csp6I	GTAC	1 cut(s)	147
CviAII	CATG	4 cut(s)	745, 1004, 1220, 1244
CviQI	GTAC	1 cut(s)	147
DdeI	CTNAG	3 cut(s)	48, 678, 840
DpnI	GATC	3 cut(s)	12, 836, 1188
DpnII	GATC	3 cut(s)	10, 834, 1186
DrdI	GACNNNNNNGTC	1 cut(s)	1175
DseDI	GACNNNNNNGTC	1 cut(s)	1175
Eam1104I	CTCTTC	3 cut(s)	327, 399, 687
EarI	CTCTTC	3 cut(s)	327, 399, 687
Eco31I	GGTCTC	1 cut(s)	401
Eco32I	GATATC	1 cut(s)	986
Eco47I	GGWCC	1 cut(s)	1053
Eco57I	CTGAAG	1 cut(s)	366
EcoRII	CCWGG	2 cut(s)	904, 1264
EcoRV	GATATC	1 cut(s)	986
EcoT22I	ATGCAT	1 cut(s)	1317
FaeI	CATG	4 cut(s)	748, 1007, 1223, 1247
FaqI	GGGAC	1 cut(s)	68
FatI	CATG	4 cut(s)	744, 1003, 1219, 1243
FbaI	TGATCA	1 cut(s)	834
Fnu4HI	GCNGC	5 cut(s)	155, 210, 279, 392, 629
FokI	GGATG	6 cut(s)	513, 619, 662, 701, 875, 1083
Fsp4HI	GCNGC	5 cut(s)	155, 210, 279, 392, 629
FspBI	CTAG	3 cut(s)	102, 312, 1290
FspI	TGCGCA	2 cut(s)	390, 423
GlaI	GCGC	2 cut(s)	390, 423
GluI	GCNGC	5 cut(s)	155, 210, 279, 392, 629
GsuI	CTGGAG	3 cut(s)	56, 79, 874
HaeIII	GGCC	3 cut(s)	225, 352, 1285
HapII	CCGG	1 cut(s)	524
HhaI	GCGC	2 cut(s)	391, 424
Hin1II	CATG	4 cut(s)	748, 1007, 1223, 1247
Hin6I	GCGC	2 cut(s)	389, 422
HinP1I	GCGC	2 cut(s)	389, 422
HincII	GTYRAC	3 cut(s)	300, 934, 1158
HindII	GTYRAC	3 cut(s)	300, 934, 1158
HinfI	GANTC	3 cut(s)	106, 568, 787
HpaI	GTTAAC	1 cut(s)	934
HpaII	CCGG	1 cut(s)	524
HphI	GGTGA	1 cut(s)	920
Hpy166II	GTNNAC	3 cut(s)	300, 934, 1158
Hpy188I	TCNGA	5 cut(s)	71, 204, 774, 843, 1209
Hpy188III	TCNNGA	6 cut(s)	380, 590, 853, 1166, 1229, 1277
Hpy8I	GTNNAC	3 cut(s)	300, 934, 1158
HpyAV	CCTTC	4 cut(s)	201, 341, 669, 1037
HpyCH4III	ACNGT	2 cut(s)	412, 1217
HpyCH4IV	ACGT	4 cut(s)	1082, 1114, 1123, 1294
HpyCH4V	TGCA	9 cut(s)	229, 576, 653, 866, 1003, 1065, 1077, 1127, 1315
HpyF10VI	GCNNNNNNNGC	2 cut(s)	391, 1124
HpyF3I	CTNAG	3 cut(s)	48, 678, 840
HpySE526I	ACGT	4 cut(s)	1082, 1114, 1123, 1294
Hsp92II	CATG	4 cut(s)	748, 1007, 1223, 1247
HspAI	GCGC	2 cut(s)	389, 422
Ksp22I	TGATCA	1 cut(s)	834
KspAI	GTTAAC	1 cut(s)	934
Kzo9I	GATC	3 cut(s)	10, 834, 1186
LguI	GCTCTTC	1 cut(s)	687
LmnI	GCTCC	3 cut(s)	151, 475, 760
Lsp1109I	GCAGC	4 cut(s)	141, 196, 265, 403
LweI	GCATC	4 cut(s)	640, 772, 853, 1188
MabI	ACCWGGT	1 cut(s)	904
MaeI	CTAG	3 cut(s)	102, 312, 1290
MaeII	ACGT	4 cut(s)	1082, 1114, 1123, 1294
MaeIII	GTNAC	4 cut(s)	236, 799, 991, 1211
MalI	GATC	3 cut(s)	12, 836, 1188
MboI	GATC	3 cut(s)	10, 834, 1186
MboII	GAAGA	7 cut(s)	281, 344, 416, 704, 721, 1144, 1171
MfeI	CAATTG	2 cut(s)	468, 804
MluCI	AATT	7 cut(s)	468, 577, 667, 804, 952, 1032, 1161
Mph1103I	ATGCAT	1 cut(s)	1317
MseI	TTAA	4 cut(s)	81, 438, 486, 933
MslI	CAYNNNNRTG	3 cut(s)	203, 234, 728
MspI	CCGG	1 cut(s)	524
MspR9I	CCNGG	3 cut(s)	525, 906, 1266
MunI	CAATTG	2 cut(s)	468, 804
MvaI	CCWGG	2 cut(s)	906, 1266
MwoI	GCNNNNNNNGC	2 cut(s)	391, 1124
NciI	CCSGG	1 cut(s)	525
NdeII	GATC	3 cut(s)	10, 834, 1186
NlaIII	CATG	4 cut(s)	748, 1007, 1223, 1247
NlaIV	GGNNCC	1 cut(s)	372
NmuCI	GTSAC	2 cut(s)	236, 991
NsbI	TGCGCA	2 cut(s)	390, 423
NsiI	ATGCAT	1 cut(s)	1317
OliI	CACNNNNGTG	1 cut(s)	234
PciSI	GCTCTTC	1 cut(s)	687
PcsI	WCGNNNNNNNCGW	2 cut(s)	1111, 1120
PfeI	GAWTC	3 cut(s)	106, 568, 787
PkrI	GCNGC	5 cut(s)	156, 211, 280, 393, 630
PsiI	TTATAA	1 cut(s)	183
Psp6I	CCWGG	2 cut(s)	904, 1264
PspGI	CCWGG	2 cut(s)	904, 1264
PspN4I	GGNNCC	1 cut(s)	372
PspPI	GGNCC	3 cut(s)	223, 350, 1053
PstNI	CAGNNNCTG	1 cut(s)	266
RsaI	GTAC	1 cut(s)	148
RsaNI	GTAC	1 cut(s)	147
RseI	CAYNNNNRTG	3 cut(s)	203, 234, 728
SapI	GCTCTTC	1 cut(s)	687
SaqAI	TTAA	4 cut(s)	81, 438, 486, 933
SatI	GCNGC	5 cut(s)	155, 210, 279, 392, 629
Sau3AI	GATC	3 cut(s)	10, 834, 1186
Sau96I	GGNCC	3 cut(s)	223, 350, 1053
ScrFI	CCNGG	3 cut(s)	525, 906, 1266
SexAI	ACCWGGT	1 cut(s)	904
SfaNI	GCATC	4 cut(s)	640, 772, 853, 1188
SinI	GGWCC	1 cut(s)	1053
SmiMI	CAYNNNNRTG	3 cut(s)	203, 234, 728
SmlI	CTYRAG	2 cut(s)	158, 1190
SmoI	CTYRAG	2 cut(s)	158, 1190
Sse9I	AATT	7 cut(s)	468, 577, 667, 804, 952, 1032, 1161
SsiI	CCGC	4 cut(s)	254, 529, 629, 755
SspMI	CTAG	3 cut(s)	102, 312, 1290
StyD4I	CCNGG	3 cut(s)	523, 904, 1264
TaaI	ACNGT	2 cut(s)	412, 1217
TaiI	ACGT	4 cut(s)	1085, 1117, 1126, 1297
TasI	AATT	7 cut(s)	468, 577, 667, 804, 952, 1032, 1161
TauI	GCSGC	1 cut(s)	631
TfiI	GAWTC	3 cut(s)	106, 568, 787
Tru1I	TTAA	4 cut(s)	81, 438, 486, 933
Tru9I	TTAA	4 cut(s)	81, 438, 486, 933
TscAI	CASTG	3 cut(s)	578, 832, 1177
TseFI	GTSAC	2 cut(s)	236, 991
TseI	GCWGC	4 cut(s)	154, 209, 278, 391
Tsp45I	GTSAC	2 cut(s)	236, 991
TspDTI	ATGAA	3 cut(s)	705, 915, 1260
TspGWI	ACGGA	2 cut(s)	164, 1083
TspRI	CASTG	3 cut(s)	578, 832, 1177
VpaK11BI	GGWCC	1 cut(s)	1053
XspI	CTAG	3 cut(s)	102, 312, 1290
Zsp2I	ATGCAT	1 cut(s)	1317

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.