Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

24807564 .. 24809684

Gene Structure 2121 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00237200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2121 bp

ATGAAACGCTCCGTCGATGGTGTCGCCGCCATCTCTTCGTCGTTGCCGCCGAAGAAACCTGTCTTCTTAACCAAAGCCGAACGCGAGAAGTTAGCTCTCCAACGCCGCCAAGAAGAACACGAGGAACAGAAACGCCGCCAGCACCAGCTTCTCTCCAATCTCCGCTCTTCCTCCGATTCCGTCCCCAACAACTCCAATTCCGACCGGGACCGGGACCGCGATAGGGACCGGGACCGCGACCGATACTCCCGAAGCGATCGAGACCGTGAGCGTGAATTGGAGCGGCGCAACCGTGACCGTGACCGTGACAACCGTGAGAGGGAGCGCGAAGAGGAGGCCAAGGCCCGAGAGCGTGCTCGATTGGACAAATTAGCGGACCGCGAGCGTGATAAGGAGCTTGAGGCCATCAAAGAGCAGTATCTGGGCTCGAAGAAGCCGAAGAAGCGTGTTATTAAACCTAGCGAGAAGTTCCGATTCTCTTTCGATTGGGAGAATACAGAGGACACTTCGCGTGATATGAATGCTTTGTACCAAAACCCTCACGAGGCACAGCTCCTGTTTGGGAGAGGGTTTCGAGCCGGAATGGACCGCCGGGAGCAGAAGAAGCTTGCGGTGAAGCAGGAGAGGGAGCTTAGGGATGAGATTCGGAAGAAGGACGGCGTGGAGGAGAGGCCCGAGGAGGCTGCGGCGCAGAGGCTCAAGGAGGAGGCTGCTGAGCTATATGATACTTTTGATATGAGAGTGGATCGGCATTGGACTGATAAGAAGCTGGAGGAGATGACTGAGAGGGACTGGAGGATATTCCGAGAAGACTTCAATATATCCTACAAAGGGTCTAGGATTCCTCGCCCTATGAGGAGTTGGGTTGAGAGTAGATTGAGTACGGAGCTGCTCAAGGCTGTGGAGAGGGCTGGTTATAAGAAGCCTTCTCCCATTCAGATGGCTGCCATTCCTCTGGGCCTGCAACAGCGTGATGTTATCGGCATTGCAGAGACTGGTTCTGGTAAGACTGCTGCCTTTGTTCTTCCTATGTTGACCTATATTTCTAGGTTGCCCCCTATTAGTGAGGAGAATGAGGCTGAAGGTCCTTATGCTGTTGTCATGGCACCTACTCGTGAGCTTGCGCAGCAGATTGAGGAAGAGACTGTCAAGTTTGCGCATTACTTGGGTATTAAAGTGGTTTCTATTGTTGGTGGGCAGTCAATTGAAGAACAGGGTTTTAAAATTAGGCAAGGATGTGAGGTTGTTATTGCTACGCCAGGGCGGTTGATTGATTGTTTGGAGAGGCGTTATGCTGTTTTGAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGATAGGATGATTGATATGGGGTTTGAGCCGCAGGTTGTAGGTGTTTTGGATGCAATGCCTTCCAGCAATTTCAAACCTGAGAATGAGGATGAAGAGCTTGATGACAAGAAGATTTACAGAACCACTTATATGTTTAGTGCGACCATGCCTCCTGCGGTGGAGCGCCTTGCTCGGAAGTATTTGAGGAATCCTGTTGTGGTTACAATTGGCACAGCTGGAAAGACTACTGATTTGATCACTCAGAATGTGGTCTGGAGTAAGGATGCAGAGAAGTTTGAGAGGTTAAAGAGATTGCTTGATGAACTTGGTGATAAGACTGCTATTGTGTTTGTCAACACCAAGAAAACTGCTGATTATGTAGCCAAGAGTTTGGATAAGAATGGATATCGTGTGACCACTTTGCATGGGGGGAAATCACAAGACCAGAGAGAAATTAGTCTTGAAGGTTTCAGGACCAGGAGGTACAATGTCCTTGTTGCAACGGATGTTGCTGGACGTGGTATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCTCAAGTATTGAAACGTACACCCATCGTATTGGACGTACTGGACGTGCAGGGAAGACTGGTGTAGCCACATCATTGTTGACAATTCACGACACTGATGTCTTCTATGATCTCAAGCAGATGCTCATTCAGAGTAACAGTCATGTTCCTCCTGAATTGGCAAAACATGAAGCCTCAAAGTTCAAGCCTGGTTCTATTCCTGATAGGCCACCTAGACGTAATGACACTATCTTTACGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

706

Amino Acids

81.6

Weight (kDa)

8.85

Isoelectric Point (pI)

43.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDX23	PF25430	159 - 240	2.9e-22	DDX23-like domain
DEAD	PF00270	310 - 500	4.7e-46	DEAD/DEAH box helicase
Helicase_C	PF00271	535 - 644	1.2e-34	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	918
AasI	GACNNNNNNGTC	1 cut(s)	1976
Acc16I	TGCGCA	2 cut(s)	1125, 1158
Acc36I	ACCTGC	1 cut(s)	1357
AccB1I	GGYRCC	1 cut(s)	1105
AccBSI	CCGCTC	2 cut(s)	165, 283
AccII	CGCG	6 cut(s)	84, 219, 237, 327, 381, 511
AclWI	GGATC	1 cut(s)	753
AcuI	CTGAAG	1 cut(s)	1101
AfaI	GTAC	5 cut(s)	530, 883, 1799, 1898, 1918
AfiI	CCNNNNNNNGG	5 cut(s)	211, 223, 319, 544, 831
AgsI	TTSAA	7 cut(s)	817, 1208, 1303, 1408, 1778, 1892, 2062
AjiI	CACGTC	2 cut(s)	1832, 1925
AjnI	CCWGG	3 cut(s)	1258, 1790, 2065
Alw21I	GWGCWC	1 cut(s)	358
Alw26I	GTCTC	3 cut(s)	255, 986, 1136
AlwI	GGATC	1 cut(s)	753
AlwNI	CAGNNNCTG	3 cut(s)	421, 556, 995
Ama87I	CYCGRG	2 cut(s)	345, 674
AoxI	GGCC	7 cut(s)	336, 342, 402, 671, 958, 1854, 2084
ApeKI	GCWGC	6 cut(s)	683, 710, 889, 944, 1013, 1126
ArsI	GACNNNNNNTTYG	2 cut(s)	1549, 1581
AseI	ATTAAT	1 cut(s)	1866
AspLEI	GCGC	6 cut(s)	288, 327, 691, 1126, 1159, 1500
AsuC2I	CCSGG	4 cut(s)	206, 212, 230, 593
AsuHPI	GGTGA	2 cut(s)	625, 1655
AvaI	CYCGRG	2 cut(s)	345, 674
AvaII	GGWCC	8 cut(s)	208, 214, 226, 232, 376, 586, 1085, 1788
BanI	GGYRCC	1 cut(s)	1105
BanII	GRGCYC	1 cut(s)	428
BauI	CACGAG	3 cut(s)	119, 542, 1113
BbsI	GAAGAC	4 cut(s)	55, 816, 1940, 1972
Bbv12I	GWGCWC	1 cut(s)	358
BbvI	GCAGC	6 cut(s)	670, 697, 876, 931, 1000, 1138
BccI	CCATC	5 cut(s)	11, 38, 413, 934, 1911
BceAI	ACGGC	1 cut(s)	673
BcgI	CGANNNNNNTGC	2 cut(s)	665, 699
BciT130I	CCWGG	3 cut(s)	1260, 1792, 2067
BclI	TGATCA	1 cut(s)	1569
BcnI	CCSGG	4 cut(s)	206, 212, 230, 593
BcoDI	GTCTC	3 cut(s)	255, 986, 1136
BfaI	CTAG	4 cut(s)	459, 837, 1047, 2091
BfoI	RGCGCY	1 cut(s)	1501
BfuAI	ACCTGC	1 cut(s)	1357
BlpI	GCTNAGC	1 cut(s)	714
Bme1390I	CCNGG	7 cut(s)	206, 212, 230, 593, 1260, 1792, 2067
Bme18I	GGWCC	8 cut(s)	208, 214, 226, 232, 376, 586, 1085, 1788
BmeT110I	CYCGRG	2 cut(s)	345, 674
BmgBI	CACGTC	2 cut(s)	1832, 1925
BmiI	GGNNCC	5 cut(s)	209, 215, 227, 233, 1107
BmrFI	CCNGG	7 cut(s)	206, 212, 230, 593, 1260, 1792, 2067
BmsI	GCATC	3 cut(s)	1375, 1588, 1989
BpiI	GAAGAC	4 cut(s)	55, 816, 1940, 1972
BpmI	CTGGAG	3 cut(s)	791, 814, 1609
Bpu10I	CCTNAGC	1 cut(s)	632
Bpu1102I	GCTNAGC	1 cut(s)	714
BpuEI	CTTGAG	5 cut(s)	419, 683, 878, 1867, 1976
BpuMI	CCSGG	4 cut(s)	206, 212, 230, 593
BsaI	GGTCTC	1 cut(s)	255
BsaJI	CCNNGG	3 cut(s)	339, 675, 1259
BsaXI	ACNNNNNCTCC	4 cut(s)	230, 260, 1468, 1498
Bsc4I	CCNNNNNNNGG	5 cut(s)	211, 223, 319, 544, 831
Bse1I	ACTGG	4 cut(s)	797, 1000, 1924, 1942
Bse3DI	GCAATG	2 cut(s)	984, 1395
BseBI	CCWGG	3 cut(s)	1260, 1792, 2067
BseDI	CCNNGG	3 cut(s)	339, 675, 1259
BseGI	GGATG	7 cut(s)	643, 1241, 1347, 1390, 1429, 1603, 1825
BseLI	CCNNNNNNNGG	5 cut(s)	211, 223, 319, 544, 831
BseMI	GCAATG	2 cut(s)	984, 1395
BseMII	CTCAG	4 cut(s)	705, 774, 1404, 1589
BseNI	ACTGG	4 cut(s)	797, 1000, 1924, 1942
BseRI	GAGGAG	7 cut(s)	347, 680, 692, 719, 788, 871, 1082
BseXI	GCAGC	6 cut(s)	670, 697, 876, 931, 1000, 1138
BsgI	GTGCAG	1 cut(s)	1947
Bsh1236I	CGCG	6 cut(s)	84, 219, 237, 327, 381, 511
Bsh1285I	CGRYCG	3 cut(s)	205, 241, 259
BshFI	GGCC	7 cut(s)	338, 344, 404, 673, 960, 1856, 2086
BshNI	GGYRCC	1 cut(s)	1105
BsiEI	CGRYCG	3 cut(s)	205, 241, 259
BsiHKAI	GWGCWC	1 cut(s)	358
BsiHKCI	CYCGRG	2 cut(s)	345, 674
BsiSI	CCGG	5 cut(s)	205, 211, 229, 579, 592
BslFI	GGGAC	6 cut(s)	167, 221, 227, 239, 245, 803
BslI	CCNNNNNNNGG	5 cut(s)	211, 223, 319, 544, 831
BsmAI	GTCTC	3 cut(s)	255, 986, 1136
BsmFI	GGGAC	6 cut(s)	167, 221, 227, 239, 245, 803
BsmI	GAATGC	1 cut(s)	526
BsnI	GGCC	7 cut(s)	338, 344, 404, 673, 960, 1856, 2086
Bso31I	GGTCTC	1 cut(s)	255
BsoBI	CYCGRG	2 cut(s)	345, 674
Bsp1286I	GDGCHC	2 cut(s)	358, 428
Bsp143I	GATC	4 cut(s)	256, 745, 1569, 1987
Bsp1720I	GCTNAGC	1 cut(s)	714
BspANI	GGCC	7 cut(s)	338, 344, 404, 673, 960, 1856, 2086
BspCNI	CTCAG	4 cut(s)	706, 775, 1405, 1588
BspFNI	CGCG	6 cut(s)	84, 219, 237, 327, 381, 511
BspLI	GGNNCC	5 cut(s)	209, 215, 227, 233, 1107
BspMI	ACCTGC	1 cut(s)	1357
BspPI	GGATC	1 cut(s)	753
BspQI	GCTCTTC	2 cut(s)	172, 1422
BspT107I	GGYRCC	1 cut(s)	1105
BspTNI	GGTCTC	1 cut(s)	255
BsrBI	CCGCTC	2 cut(s)	165, 283
BsrDI	GCAATG	2 cut(s)	984, 1395
BsrI	ACTGG	4 cut(s)	797, 1000, 1924, 1942
BssECI	CCNNGG	3 cut(s)	339, 675, 1259
BssMI	GATC	4 cut(s)	256, 745, 1569, 1987
BssSI	CACGAG	3 cut(s)	119, 542, 1113
BssT1I	CCWWGG	1 cut(s)	339
Bst2BI	CACGAG	3 cut(s)	119, 542, 1113
Bst2UI	CCWGG	3 cut(s)	1260, 1792, 2067
Bst4CI	ACNGT	7 cut(s)	266, 293, 299, 305, 314, 1147, 2018
Bst6I	CTCTTC	5 cut(s)	40, 172, 324, 1134, 1422
BstC8I	GCNNGC	6 cut(s)	140, 354, 383, 609, 962, 1122
BstDEI	CTNAG	5 cut(s)	632, 714, 783, 1413, 1575
BstF5I	GGATG	7 cut(s)	643, 1241, 1347, 1390, 1429, 1603, 1825
BstFNI	CGCG	6 cut(s)	84, 219, 237, 327, 381, 511
BstH2I	RGCGCY	1 cut(s)	1501
BstHHI	GCGC	6 cut(s)	288, 327, 691, 1126, 1159, 1500
BstKTI	GATC	4 cut(s)	259, 748, 1572, 1990
BstMAI	GTCTC	3 cut(s)	255, 986, 1136
BstMBI	GATC	4 cut(s)	256, 745, 1569, 1987
BstMCI	CGRYCG	3 cut(s)	205, 241, 259
BstMWI	GCNNNNNNNGC	3 cut(s)	442, 604, 1126
BstNI	CCWGG	3 cut(s)	1260, 1792, 2067
BstSCI	CCNGG	7 cut(s)	204, 210, 228, 591, 1258, 1790, 2065
BstUI	CGCG	6 cut(s)	84, 219, 237, 327, 381, 511
BstV1I	GCAGC	6 cut(s)	670, 697, 876, 931, 1000, 1138
BstV2I	GAAGAC	4 cut(s)	55, 816, 1940, 1972
BstXI	CCANNNNNNTGG	4 cut(s)	940, 955, 1705, 1910
BsuRI	GGCC	7 cut(s)	338, 344, 404, 673, 960, 1856, 2086
BtrI	CACGTC	2 cut(s)	1832, 1925
BtsCI	GGATG	7 cut(s)	643, 1241, 1347, 1390, 1429, 1603, 1825
BtsIMutI	CAGTG	2 cut(s)	1313, 1971
BveI	ACCTGC	1 cut(s)	1357
Cac8I	GCNNGC	6 cut(s)	140, 354, 383, 609, 962, 1122
CaiI	CAGNNNCTG	3 cut(s)	421, 556, 995
CfoI	GCGC	6 cut(s)	288, 327, 691, 1126, 1159, 1500
CpoI	CGGWCCG	1 cut(s)	376
Csp6I	GTAC	5 cut(s)	529, 882, 1798, 1897, 1917
CspI	CGGWCCG	1 cut(s)	376
CviAII	CATG	6 cut(s)	1102, 1480, 1739, 1859, 2021, 2045
CviQI	GTAC	5 cut(s)	529, 882, 1798, 1897, 1917
DdeI	CTNAG	5 cut(s)	632, 714, 783, 1413, 1575
DpnI	GATC	4 cut(s)	258, 747, 1571, 1989
DpnII	GATC	4 cut(s)	256, 745, 1569, 1987
DraI	TTTAAA	1 cut(s)	1222
DrdI	GACNNNNNNGTC	1 cut(s)	1976
DseDI	GACNNNNNNGTC	1 cut(s)	1976
Eam1104I	CTCTTC	5 cut(s)	40, 172, 324, 1134, 1422
EarI	CTCTTC	5 cut(s)	40, 172, 324, 1134, 1422
Eco130I	CCWWGG	1 cut(s)	339
Eco24I	GRGCYC	1 cut(s)	428
Eco31I	GGTCTC	1 cut(s)	255
Eco32I	GATATC	1 cut(s)	1721
Eco47I	GGWCC	8 cut(s)	208, 214, 226, 232, 376, 586, 1085, 1788
Eco57I	CTGAAG	1 cut(s)	1101
Eco88I	CYCGRG	2 cut(s)	345, 674
EcoO109I	RGGNCCY	1 cut(s)	1085
EcoRII	CCWGG	3 cut(s)	1258, 1790, 2065
EcoRV	GATATC	1 cut(s)	1721
EcoT14I	CCWWGG	1 cut(s)	339
EcoT38I	GRGCYC	1 cut(s)	428
ErhI	CCWWGG	1 cut(s)	339
FaeI	CATG	6 cut(s)	1105, 1483, 1742, 1862, 2024, 2048
FaqI	GGGAC	6 cut(s)	167, 221, 227, 239, 245, 803
FatI	CATG	6 cut(s)	1101, 1479, 1738, 1858, 2020, 2044
FbaI	TGATCA	1 cut(s)	1569
FokI	GGATG	7 cut(s)	650, 1248, 1354, 1397, 1436, 1610, 1832
FriOI	GRGCYC	1 cut(s)	428
FspBI	CTAG	4 cut(s)	459, 837, 1047, 2091
FspI	TGCGCA	2 cut(s)	1125, 1158
GlaI	GCGC	6 cut(s)	287, 326, 690, 1125, 1158, 1499
GsuI	CTGGAG	3 cut(s)	791, 814, 1609
HaeII	RGCGCY	1 cut(s)	1501
HaeIII	GGCC	7 cut(s)	338, 344, 404, 673, 960, 1856, 2086
HapII	CCGG	5 cut(s)	205, 211, 229, 579, 592
HhaI	GCGC	6 cut(s)	288, 327, 691, 1126, 1159, 1500
Hin1II	CATG	6 cut(s)	1105, 1483, 1742, 1862, 2024, 2048
Hin6I	GCGC	6 cut(s)	286, 325, 689, 1124, 1157, 1498
HinP1I	GCGC	6 cut(s)	286, 325, 689, 1124, 1157, 1498
HincII	GTYRAC	3 cut(s)	1035, 1669, 1959
HindII	GTYRAC	3 cut(s)	1035, 1669, 1959
HindIII	AAGCTT	1 cut(s)	605
HinfI	GANTC	6 cut(s)	176, 474, 643, 841, 1303, 1522
HpaII	CCGG	5 cut(s)	205, 211, 229, 579, 592
HphI	GGTGA	2 cut(s)	625, 1655
Hpy166II	GTNNAC	4 cut(s)	1035, 1669, 1899, 1959
Hpy188I	TCNGA	9 cut(s)	175, 202, 473, 648, 806, 939, 1509, 1578, 2010
Hpy8I	GTNNAC	4 cut(s)	1035, 1669, 1899, 1959
Hpy99I	CGWCG	2 cut(s)	17, 43
HpyAV	CCTTC	5 cut(s)	646, 936, 1076, 1404, 1772
HpyCH4III	ACNGT	7 cut(s)	266, 293, 299, 305, 314, 1147, 2018
HpyCH4IV	ACGT	5 cut(s)	1831, 1895, 1915, 1924, 2095
HpyCH4V	TGCA	8 cut(s)	964, 989, 1311, 1388, 1601, 1738, 1814, 1928
HpyF10VI	GCNNNNNNNGC	3 cut(s)	442, 604, 1126
HpyF3I	CTNAG	5 cut(s)	632, 714, 783, 1413, 1575
HpySE526I	ACGT	5 cut(s)	1831, 1895, 1915, 1924, 2095
Hsp92II	CATG	6 cut(s)	1105, 1483, 1742, 1862, 2024, 2048
HspAI	GCGC	6 cut(s)	286, 325, 689, 1124, 1157, 1498
Ksp22I	TGATCA	1 cut(s)	1569
Kzo9I	GATC	4 cut(s)	256, 745, 1569, 1987
LguI	GCTCTTC	2 cut(s)	172, 1422
LmnI	GCTCC	9 cut(s)	14, 280, 322, 394, 558, 595, 628, 886, 1495
Lsp1109I	GCAGC	6 cut(s)	670, 697, 876, 931, 1000, 1138
LweI	GCATC	3 cut(s)	1375, 1588, 1989
MaeI	CTAG	4 cut(s)	459, 837, 1047, 2091
MaeII	ACGT	5 cut(s)	1831, 1895, 1915, 1924, 2095
MaeIII	GTNAC	6 cut(s)	293, 299, 305, 1534, 1726, 2012
MalI	GATC	4 cut(s)	258, 747, 1571, 1989
MbiI	CCGCTC	2 cut(s)	165, 283
MboI	GATC	4 cut(s)	256, 745, 1569, 1987
MfeI	CAATTG	2 cut(s)	1203, 1539
MhlI	GDGCHC	2 cut(s)	358, 428
MmeI	TCCRAC	2 cut(s)	124, 225
MseI	TTAA	6 cut(s)	68, 453, 1173, 1221, 1619, 1866
MslI	CAYNNNNRTG	2 cut(s)	938, 1463
MspA1I	CMGCKG	1 cut(s)	1550
MspI	CCGG	5 cut(s)	205, 211, 229, 579, 592
MspR9I	CCNGG	7 cut(s)	206, 212, 230, 593, 1260, 1792, 2067
MunI	CAATTG	2 cut(s)	1203, 1539
Mva1269I	GAATGC	1 cut(s)	526
MvaI	CCWGG	3 cut(s)	1260, 1792, 2067
MvnI	CGCG	6 cut(s)	84, 219, 237, 327, 381, 511
MwoI	GCNNNNNNNGC	3 cut(s)	442, 604, 1126
NciI	CCSGG	4 cut(s)	206, 212, 230, 593
NdeII	GATC	4 cut(s)	256, 745, 1569, 1987
NlaIII	CATG	6 cut(s)	1105, 1483, 1742, 1862, 2024, 2048
NlaIV	GGNNCC	5 cut(s)	209, 215, 227, 233, 1107
NmuCI	GTSAC	4 cut(s)	293, 299, 305, 1726
NsbI	TGCGCA	2 cut(s)	1125, 1158
PciSI	GCTCTTC	2 cut(s)	172, 1422
PcsI	WCGNNNNNNNCGW	4 cut(s)	47, 434, 1912, 1921
PctI	GAATGC	1 cut(s)	526
PfeI	GAWTC	6 cut(s)	176, 474, 643, 841, 1303, 1522
Ple19I	CGATCG	1 cut(s)	259
PpuMI	RGGWCCY	1 cut(s)	1085
PshBI	ATTAAT	1 cut(s)	1866
PsiI	TTATAA	1 cut(s)	918
Psp5II	RGGWCCY	1 cut(s)	1085
Psp6I	CCWGG	3 cut(s)	1258, 1790, 2065
PspGI	CCWGG	3 cut(s)	1258, 1790, 2065
PspN4I	GGNNCC	5 cut(s)	209, 215, 227, 233, 1107
PspPPI	RGGWCCY	1 cut(s)	1085
PstNI	CAGNNNCTG	3 cut(s)	421, 556, 995
PvuI	CGATCG	1 cut(s)	259
PvuII	CAGCTG	1 cut(s)	1550
RsaI	GTAC	5 cut(s)	530, 883, 1799, 1898, 1918
RsaNI	GTAC	5 cut(s)	529, 882, 1798, 1897, 1917
RseI	CAYNNNNRTG	2 cut(s)	938, 1463
Rsr2I	CGGWCCG	1 cut(s)	376
RsrII	CGGWCCG	1 cut(s)	376
SapI	GCTCTTC	2 cut(s)	172, 1422
SaqAI	TTAA	6 cut(s)	68, 453, 1173, 1221, 1619, 1866
Sau3AI	GATC	4 cut(s)	256, 745, 1569, 1987
ScrFI	CCNGG	7 cut(s)	206, 212, 230, 593, 1260, 1792, 2067
SduI	GDGCHC	2 cut(s)	358, 428
SfaNI	GCATC	3 cut(s)	1375, 1588, 1989
SinI	GGWCC	8 cut(s)	208, 214, 226, 232, 376, 586, 1085, 1788
SmiMI	CAYNNNNRTG	2 cut(s)	938, 1463
SmlI	CTYRAG	5 cut(s)	398, 698, 893, 1882, 1991
SmoI	CTYRAG	5 cut(s)	398, 698, 893, 1882, 1991
SspMI	CTAG	4 cut(s)	459, 837, 1047, 2091
StyD4I	CCNGG	7 cut(s)	204, 210, 228, 591, 1258, 1790, 2065
StyI	CCWWGG	1 cut(s)	339
TaaI	ACNGT	7 cut(s)	266, 293, 299, 305, 314, 1147, 2018
TaiI	ACGT	5 cut(s)	1834, 1898, 1918, 1927, 2098
TaqI	TCGA	6 cut(s)	15, 259, 358, 428, 483, 574
TaqII	GACCGA	1 cut(s)	255
TauI	GCSGC	7 cut(s)	29, 49, 108, 138, 286, 689, 1366
TfiI	GAWTC	6 cut(s)	176, 474, 643, 841, 1303, 1522
Tru1I	TTAA	6 cut(s)	68, 453, 1173, 1221, 1619, 1866
Tru9I	TTAA	6 cut(s)	68, 453, 1173, 1221, 1619, 1866
TscAI	CASTG	2 cut(s)	1313, 1978
TseFI	GTSAC	4 cut(s)	293, 299, 305, 1726
TseI	GCWGC	6 cut(s)	683, 710, 889, 944, 1013, 1126
Tsp45I	GTSAC	4 cut(s)	293, 299, 305, 1726
TspDTI	ATGAA	5 cut(s)	17, 533, 1440, 1650, 2061
TspGWI	ACGGA	3 cut(s)	169, 899, 1832
TspRI	CASTG	2 cut(s)	1313, 1978
VpaK11BI	GGWCC	8 cut(s)	208, 214, 226, 232, 376, 586, 1085, 1788
VspI	ATTAAT	1 cut(s)	1866
XspI	CTAG	4 cut(s)	459, 837, 1047, 2091

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.