Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Forward (+)

28429541 .. 28431679

Gene Structure 2139 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG135400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGAAACGCTCCGTCGATGGCGTCGCCGCCGTCTCGTCGTCGTTGCCGCCGAAGAAACCCGTCTTCTTAACCAAAGCCGAGCGCGAGAAGTTAGCCCTACAACGCCGCCAAGAAGAACACGAGGAACAGAAACGCCGCCAGCACCAGCTTCTCTCCAATCTCCGCTCCTCCGATTCCGTCCCCAACAACTCCAACTCCGACCGGGACCGCGACCGCGATAGGGACCGAGACCGAGAGTCCCGGGACCGATACTCCCGAAGCGATCGAGATCGCGACCGGGAGAGAGACCGGGAGCGTGAATTGGAGCGGCGCAACCGTGACCGTGACAACCGTGAGAGGGAGCGCGAAGAGGAGGCCAAGGCCCGAGAGCGTGCTCGATTGGACAAATTAGCGGACCGTGAGCGCGATAAGGAGCTTGAGGCCATCAAAGAGCAGTATCTGGGCTCGAAGAAGCCGAAGAAGCGTGTTATTAAGCCTAGCGAGAAGTTCCGATTCTCTTTCGATTGGGAGAATACAGAGGACACTTCGCGTGATATGAATGCTTTATACCAAAACCCTCACGAGGCGCAGCTCCTGTTTGGGCGAGGGTTTCGTGCCGGAATGGACCGCCGAGAGCAGAAGAAGCTTGCGGTGAAGCAGGAGAGGGAGCTTAGGGATGAGATTCGGAAGAAGGACGGCGTGGAGGAGAGGCCGGAGGAGGCTGCGGCGCAGAGGCTCAAGGAGGAGGCTGCGGAGCTATATGATACTTTCGATATGAGAGTGGATCGGCATTGGACTGATAAGAAGCTGGAGGAGATGACTGAGAGGGACTGGAGGATATTCCGAGAGGACTTCAATATATCCTACAAAGGGTCTAGGATTCCTCGCCCTATGAGGAGTTGGGTTGAGAGTAGATTGAGTACGGAGCTGCTCAAGGCTGTGGAGAGGGCTGGTTATAAGAAGCCTTCTCCGATTCAGATGGCTGCCATTCCTCTGGGCCTGCAACAGCGTGATGTTATCGGCATTGCGGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTCTTCCCATGTTGACATATATTTCTAGGTTGCCTCCTATTAGTGAGGAGAATGAGGCTGAAGGTCCTTATGCTGTTGTTATGGCACCTACTCGTGAGCTTGCGCAGCAGATTGAGGAAGAGACTGTGAAGTTTGCGCATTACTTGGGTATTAAAGTGGTTTCTATTGTTGGTGGGCAGTCAATTGAGGAGCAGGGTTTTAAAATTAGGCAAGGATGTGAGGTTGTTATTGCTACGCCGGGGCGGTTGATTGATTGCTTGGAGAGGCGTTATGCTGTTTTGAATCAGTGCAATTATGTTGTTCTTGATGAGGCCGATAGGATGATTGATATGGGGTTTGAGCCGCAGGTTGTAGGTGTTTTGGATGCAATGCCTTCCAGCAATTTCAAACCTGAGAATGAGGATGAAGAGCTTGATGACAAGAAGATTTACAGAACCACTTATATGTTTAGTGCCACCATGCCTCCTGCGGTGGAGCGCCTTGCTCGGAAGTATTTGAGGAATCCTGTTGTGGTTACAATCGGCACAGCTGGAAAGACCACTGATTTGATCACTCAGAATGTGGTCTGGAGTAAGGATGCAGAGAAGTTTGAGAGGCTAAAGAGATTGCTTGACGAACTTGGTGATAAGACTGCTATTGTGTTTGTTAACACCAAGAAAACTGCTGATTATGTAGCGAAGAGTTTGGATAAGAATGGATATCGTGTGACCACTCTGCATGGGGGGAAATCACAAGACCAGAGGGAAATTAGCCTTGAAGGTTTTAGGACCAGGAGATACAATGTCCTTGTTGCAACGGACGTTGCAGGACGTGGTATTGACATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCTCAAGTATTGAAACATACACCCATCGTATTGGACGTACTGGACGTGCAGGGAAGACTGGTGTAGCCACATCATTGTTGACAATTCACGACACTGATGTCTTCTATGATCTCAAGCAGATGCTCATTCAGAGTAACAGTCATGTTCCTCCTGAACTGGCAAAACATGAAGCCTCGAAGTTCAAGCCTGGTTCTATTCCTGATAGGCCACCTAGACGTAATGACACTATCTTTACGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

712

Amino Acids

82.43

Weight (kDa)

8.85

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDX23	PF25430	165 - 246	2.9e-22	DDX23-like domain
DEAD	PF00270	316 - 506	4.8e-46	DEAD/DEAH box helicase
Helicase_C	PF00271	541 - 650	1.2e-34	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AasI	GACNNNNNNGTC	1 cut(s)	1994
Acc16I	TGCGCA	2 cut(s)	1143, 1176
Acc36I	ACCTGC	1 cut(s)	1375
AccB1I	GGYRCC	1 cut(s)	1123
AccBSI	CCGCTC	2 cut(s)	165, 307
AccII	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
AclWI	GGATC	1 cut(s)	771
AcuI	CTGAAG	1 cut(s)	1119
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	901, 1936
AfiI	CCNNNNNNNGG	4 cut(s)	220, 337, 562, 849
AgsI	TTSAA	6 cut(s)	835, 1321, 1426, 1796, 1910, 2080
AhdI	GACNNNNNGTC	1 cut(s)	235
AjiI	CACGTC	2 cut(s)	1850, 1943
AjnI	CCWGG	2 cut(s)	1808, 2083
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	5 cut(s)	37, 222, 279, 1004, 1154
AlwI	GGATC	1 cut(s)	771
AlwNI	CAGNNNCTG	2 cut(s)	439, 574
Ama87I	CYCGRG	2 cut(s)	240, 363
AoxI	GGCC	8 cut(s)	354, 360, 420, 689, 976, 1350, 1872, 2102
ApeKI	GCWGC	7 cut(s)	568, 701, 728, 907, 962, 1031, 1144
ArsI	GACNNNNNNTTYG	2 cut(s)	1567, 1599
AseI	ATTAAT	1 cut(s)	1884
AspLEI	GCGC	9 cut(s)	84, 312, 345, 405, 568, 709, 1144, 1177, 1518
AsuC2I	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
AsuHPI	GGTGA	2 cut(s)	643, 1673
AvaI	CYCGRG	2 cut(s)	240, 363
AvaII	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
BanI	GGYRCC	1 cut(s)	1123
BanII	GRGCYC	1 cut(s)	446
BauI	CACGAG	3 cut(s)	119, 560, 1131
BbsI	GAAGAC	3 cut(s)	55, 1958, 1990
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	7 cut(s)	580, 688, 715, 894, 949, 1018, 1156
BccI	CCATC	4 cut(s)	11, 431, 952, 1929
BceAI	ACGGC	2 cut(s)	14, 691
BciT130I	CCWGG	2 cut(s)	1810, 2085
BclI	TGATCA	1 cut(s)	1587
BcnI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
BcoDI	GTCTC	5 cut(s)	37, 222, 279, 1004, 1154
BfaI	CTAG	4 cut(s)	477, 855, 1065, 2109
BfoI	RGCGCY	1 cut(s)	1519
BfuAI	ACCTGC	1 cut(s)	1375
Bme1390I	CCNGG	8 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085
Bme18I	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmeT110I	CYCGRG	2 cut(s)	240, 363
BmgBI	CACGTC	2 cut(s)	1850, 1943
BmiI	GGNNCC	4 cut(s)	206, 224, 245, 1125
BmrFI	CCNGG	8 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085
BmsI	GCATC	3 cut(s)	1393, 1606, 2007
BpiI	GAAGAC	3 cut(s)	55, 1958, 1990
BpmI	CTGGAG	3 cut(s)	809, 832, 1627
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	5 cut(s)	437, 701, 896, 1885, 1994
BpuMI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	222, 279
BsaJI	CCNNGG	3 cut(s)	240, 357, 1277
BsaXI	ACNNNNNCTCC	6 cut(s)	179, 209, 236, 266, 1486, 1516
Bsc4I	CCNNNNNNNGG	4 cut(s)	220, 337, 562, 849
Bse1I	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
Bse3DI	GCAATG	2 cut(s)	1002, 1413
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	1810, 2085
BseDI	CCNNGG	3 cut(s)	240, 357, 1277
BseGI	GGATG	6 cut(s)	661, 1259, 1365, 1408, 1447, 1621
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	4 cut(s)	220, 337, 562, 849
BseMI	GCAATG	2 cut(s)	1002, 1413
BseMII	CTCAG	3 cut(s)	792, 1422, 1607
BseNI	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
BseRI	GAGGAG	9 cut(s)	157, 365, 698, 710, 737, 806, 889, 1100, 1241
BseXI	GCAGC	7 cut(s)	580, 688, 715, 894, 949, 1018, 1156
BsgI	GTGCAG	1 cut(s)	1965
Bsh1236I	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
Bsh1285I	CGRYCG	4 cut(s)	202, 214, 265, 277
BshFI	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2104
BshNI	GGYRCC	1 cut(s)	1123
BsiEI	CGRYCG	4 cut(s)	202, 214, 265, 277
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	2 cut(s)	240, 363
BsiSI	CCGG	7 cut(s)	202, 241, 277, 289, 597, 692, 1277
BslFI	GGGAC	6 cut(s)	164, 218, 223, 236, 257, 821
BslI	CCNNNNNNNGG	4 cut(s)	220, 337, 562, 849
BsmAI	GTCTC	5 cut(s)	37, 222, 279, 1004, 1154
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	6 cut(s)	164, 218, 223, 236, 257, 821
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2104
Bso31I	GGTCTC	2 cut(s)	222, 279
BsoBI	CYCGRG	2 cut(s)	240, 363
Bsp1286I	GDGCHC	2 cut(s)	376, 446
Bsp143I	GATC	5 cut(s)	262, 268, 763, 1587, 2005
Bsp68I	TCGCGA	1 cut(s)	273
BspANI	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2104
BspCNI	CTCAG	3 cut(s)	793, 1423, 1606
BspFNI	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
BspLI	GGNNCC	4 cut(s)	206, 224, 245, 1125
BspMI	ACCTGC	1 cut(s)	1375
BspPI	GGATC	1 cut(s)	771
BspQI	GCTCTTC	1 cut(s)	1440
BspT107I	GGYRCC	1 cut(s)	1123
BspTNI	GGTCTC	2 cut(s)	222, 279
BsrBI	CCGCTC	2 cut(s)	165, 307
BsrDI	GCAATG	2 cut(s)	1002, 1413
BsrI	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
BssECI	CCNNGG	3 cut(s)	240, 357, 1277
BssMI	GATC	5 cut(s)	262, 268, 763, 1587, 2005
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	3 cut(s)	119, 560, 1131
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	3 cut(s)	119, 560, 1131
Bst2UI	CCWGG	2 cut(s)	1810, 2085
Bst4CI	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
Bst6I	CTCTTC	4 cut(s)	342, 1152, 1440, 1712
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	5 cut(s)	140, 372, 627, 980, 1140
BstDEI	CTNAG	4 cut(s)	650, 801, 1431, 1593
BstF5I	GGATG	6 cut(s)	661, 1259, 1365, 1408, 1447, 1621
BstFNI	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
BstH2I	RGCGCY	1 cut(s)	1519
BstHHI	GCGC	9 cut(s)	84, 312, 345, 405, 568, 709, 1144, 1177, 1518
BstKTI	GATC	5 cut(s)	265, 271, 766, 1590, 2008
BstMAI	GTCTC	5 cut(s)	37, 222, 279, 1004, 1154
BstMBI	GATC	5 cut(s)	262, 268, 763, 1587, 2005
BstMCI	CGRYCG	4 cut(s)	202, 214, 265, 277
BstMWI	GCNNNNNNNGC	3 cut(s)	460, 622, 1144
BstNI	CCWGG	2 cut(s)	1810, 2085
BstSCI	CCNGG	8 cut(s)	201, 239, 240, 276, 288, 1276, 1808, 2083
BstUI	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
BstV1I	GCAGC	7 cut(s)	580, 688, 715, 894, 949, 1018, 1156
BstV2I	GAAGAC	3 cut(s)	55, 1958, 1990
BstXI	CCANNNNNNTGG	2 cut(s)	973, 1928
BsuRI	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2104
BtrI	CACGTC	2 cut(s)	1850, 1943
BtsCI	GGATG	6 cut(s)	661, 1259, 1365, 1408, 1447, 1621
BtsIMutI	CAGTG	3 cut(s)	1331, 1578, 1989
BtuMI	TCGCGA	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	1375
Cac8I	GCNNGC	5 cut(s)	140, 372, 627, 980, 1140
CaiI	CAGNNNCTG	2 cut(s)	439, 574
CfoI	GCGC	9 cut(s)	84, 312, 345, 405, 568, 709, 1144, 1177, 1518
Cfr9I	CCCGGG	1 cut(s)	240
CpoI	CGGWCCG	1 cut(s)	394
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	900, 1935
CspI	CGGWCCG	1 cut(s)	394
CviAII	CATG	6 cut(s)	1048, 1498, 1757, 1877, 2039, 2063
CviQI	GTAC	2 cut(s)	900, 1935
DdeI	CTNAG	4 cut(s)	650, 801, 1431, 1593
DpnI	GATC	5 cut(s)	264, 270, 765, 1589, 2007
DpnII	GATC	5 cut(s)	262, 268, 763, 1587, 2005
DraI	TTTAAA	1 cut(s)	1240
DrdI	GACNNNNNNGTC	1 cut(s)	1994
DriI	GACNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	1994
Eam1104I	CTCTTC	4 cut(s)	342, 1152, 1440, 1712
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	4 cut(s)	342, 1152, 1440, 1712
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	446
Eco31I	GGTCTC	2 cut(s)	222, 279
Eco32I	GATATC	1 cut(s)	1739
Eco47I	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
Eco57I	CTGAAG	1 cut(s)	1119
Eco88I	CYCGRG	2 cut(s)	240, 363
EcoO109I	RGGNCCY	1 cut(s)	1103
EcoRII	CCWGG	2 cut(s)	1808, 2083
EcoRV	GATATC	1 cut(s)	1739
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	6 cut(s)	1051, 1501, 1760, 1880, 2042, 2066
FaqI	GGGAC	6 cut(s)	164, 218, 223, 236, 257, 821
FatI	CATG	6 cut(s)	1047, 1497, 1756, 1876, 2038, 2062
FbaI	TGATCA	1 cut(s)	1587
FokI	GGATG	6 cut(s)	668, 1266, 1372, 1415, 1454, 1628
FriOI	GRGCYC	1 cut(s)	446
FspBI	CTAG	4 cut(s)	477, 855, 1065, 2109
FspI	TGCGCA	2 cut(s)	1143, 1176
GlaI	GCGC	9 cut(s)	83, 311, 344, 404, 567, 708, 1143, 1176, 1517
GsuI	CTGGAG	3 cut(s)	809, 832, 1627
HaeII	RGCGCY	1 cut(s)	1519
HaeIII	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2104
HapII	CCGG	7 cut(s)	202, 241, 277, 289, 597, 692, 1277
HgaI	GACGC	1 cut(s)	10
HhaI	GCGC	9 cut(s)	84, 312, 345, 405, 568, 709, 1144, 1177, 1518
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	1051, 1501, 1760, 1880, 2042, 2066
Hin6I	GCGC	9 cut(s)	82, 310, 343, 403, 566, 707, 1142, 1175, 1516
HinP1I	GCGC	9 cut(s)	82, 310, 343, 403, 566, 707, 1142, 1175, 1516
HincII	GTYRAC	3 cut(s)	1053, 1687, 1977
HindII	GTYRAC	3 cut(s)	1053, 1687, 1977
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	8 cut(s)	173, 236, 492, 661, 859, 952, 1321, 1540
HpaI	GTTAAC	1 cut(s)	1687
HpaII	CCGG	7 cut(s)	202, 241, 277, 289, 597, 692, 1277
HphI	GGTGA	2 cut(s)	643, 1673
Hpy166II	GTNNAC	3 cut(s)	1053, 1687, 1977
Hpy8I	GTNNAC	3 cut(s)	1053, 1687, 1977
Hpy99I	CGWCG	4 cut(s)	17, 26, 40, 43
HpyAV	CCTTC	5 cut(s)	664, 954, 1094, 1422, 1790
HpyCH4III	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
HpyCH4IV	ACGT	5 cut(s)	1839, 1849, 1933, 1942, 2113
HpyCH4V	TGCA	8 cut(s)	982, 1329, 1406, 1619, 1756, 1832, 1844, 1946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	460, 622, 1144
HpyF3I	CTNAG	4 cut(s)	650, 801, 1431, 1593
HpySE526I	ACGT	5 cut(s)	1839, 1849, 1933, 1942, 2113
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	6 cut(s)	1051, 1501, 1760, 1880, 2042, 2066
HspAI	GCGC	9 cut(s)	82, 310, 343, 403, 566, 707, 1142, 1175, 1516
Ksp22I	TGATCA	1 cut(s)	1587
KspAI	GTTAAC	1 cut(s)	1687
Kzo9I	GATC	5 cut(s)	262, 268, 763, 1587, 2005
LguI	GCTCTTC	1 cut(s)	1440
Lsp1109I	GCAGC	7 cut(s)	580, 688, 715, 894, 949, 1018, 1156
LweI	GCATC	3 cut(s)	1393, 1606, 2007
MaeI	CTAG	4 cut(s)	477, 855, 1065, 2109
MaeII	ACGT	5 cut(s)	1839, 1849, 1933, 1942, 2113
MaeIII	GTNAC	5 cut(s)	317, 323, 1552, 1744, 2030
MalI	GATC	5 cut(s)	264, 270, 765, 1589, 2007
MbiI	CCGCTC	2 cut(s)	165, 307
MboI	GATC	5 cut(s)	262, 268, 763, 1587, 2005
MfeI	CAATTG	1 cut(s)	1221
MhlI	GDGCHC	2 cut(s)	376, 446
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	216, 222
MseI	TTAA	6 cut(s)	68, 471, 1191, 1239, 1686, 1884
MslI	CAYNNNNRTG	1 cut(s)	1481
MspA1I	CMGCKG	1 cut(s)	1568
MspI	CCGG	7 cut(s)	202, 241, 277, 289, 597, 692, 1277
MspR9I	CCNGG	8 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085
MunI	CAATTG	1 cut(s)	1221
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	2 cut(s)	1810, 2085
MvnI	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
MwoI	GCNNNNNNNGC	3 cut(s)	460, 622, 1144
NciI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
NdeII	GATC	5 cut(s)	262, 268, 763, 1587, 2005
NlaIII	CATG	6 cut(s)	1051, 1501, 1760, 1880, 2042, 2066
NlaIV	GGNNCC	4 cut(s)	206, 224, 245, 1125
NmeAIII	GCCGAG	2 cut(s)	103, 635
NmuCI	GTSAC	3 cut(s)	317, 323, 1744
NruI	TCGCGA	1 cut(s)	273
NsbI	TGCGCA	2 cut(s)	1143, 1176
PciSI	GCTCTTC	1 cut(s)	1440
PcsI	WCGNNNNNNNCGW	4 cut(s)	47, 452, 1930, 1939
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	7 cut(s)	173, 492, 661, 859, 952, 1321, 1540
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	1103
PshBI	ATTAAT	1 cut(s)	1884
PsiI	TTATAA	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	1103
Psp6I	CCWGG	2 cut(s)	1808, 2083
PspGI	CCWGG	2 cut(s)	1808, 2083
PspN4I	GGNNCC	4 cut(s)	206, 224, 245, 1125
PspPPI	RGGWCCY	1 cut(s)	1103
PstNI	CAGNNNCTG	2 cut(s)	439, 574
PvuI	CGATCG	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	1568
RruI	TCGCGA	1 cut(s)	273
RsaI	GTAC	2 cut(s)	901, 1936
RsaNI	GTAC	2 cut(s)	900, 1935
RseI	CAYNNNNRTG	1 cut(s)	1481
Rsr2I	CGGWCCG	1 cut(s)	394
RsrII	CGGWCCG	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	1440
SaqAI	TTAA	6 cut(s)	68, 471, 1191, 1239, 1686, 1884
Sau3AI	GATC	5 cut(s)	262, 268, 763, 1587, 2005
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	8 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085
SduI	GDGCHC	2 cut(s)	376, 446
SfaNI	GCATC	3 cut(s)	1393, 1606, 2007
SinI	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
SmaI	CCCGGG	1 cut(s)	242
SmiMI	CAYNNNNRTG	1 cut(s)	1481
SmlI	CTYRAG	5 cut(s)	416, 716, 911, 1900, 2009
SmoI	CTYRAG	5 cut(s)	416, 716, 911, 1900, 2009
SspMI	CTAG	4 cut(s)	477, 855, 1065, 2109
StyD4I	CCNGG	8 cut(s)	201, 239, 240, 276, 288, 1276, 1808, 2083
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
TaiI	ACGT	5 cut(s)	1842, 1852, 1936, 1945, 2116
TaqI	TCGA	7 cut(s)	15, 265, 376, 446, 501, 750, 2072
TaqII	GACCGA	3 cut(s)	240, 246, 261
TauI	GCSGC	7 cut(s)	29, 49, 108, 138, 310, 707, 1384
TfiI	GAWTC	7 cut(s)	173, 492, 661, 859, 952, 1321, 1540
Tru1I	TTAA	6 cut(s)	68, 471, 1191, 1239, 1686, 1884
Tru9I	TTAA	6 cut(s)	68, 471, 1191, 1239, 1686, 1884
TscAI	CASTG	3 cut(s)	1331, 1585, 1996
TseFI	GTSAC	3 cut(s)	317, 323, 1744
TseI	GCWGC	7 cut(s)	568, 701, 728, 907, 962, 1031, 1144
Tsp45I	GTSAC	3 cut(s)	317, 323, 1744
TspDTI	ATGAA	4 cut(s)	17, 551, 1458, 2079
TspGWI	ACGGA	3 cut(s)	166, 917, 1850
TspMI	CCCGGG	1 cut(s)	240
TspRI	CASTG	3 cut(s)	1331, 1585, 1996
VpaK11BI	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
VspI	ATTAAT	1 cut(s)	1884
XmaI	CCCGGG	1 cut(s)	240
XspI	CTAG	4 cut(s)	477, 855, 1065, 2109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.