Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Forward (+)

12334326 .. 12345638

Gene Structure 11313 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0092400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAGCGATGAACTAGCCCATGATTTCTTTCCCATCATCAAAGTATACAAAGACGGTCGAGTCGACCGACTCTGGGGCACATCCACACTCCCTGCATCCATCGATCCCCAAACCGGTGTTCAATCCAAAGACGTCGTCATCTCAACCGCACCACCCGTCTCTATAAGGCTTTACATTCCCAAATCCACCACAACCGAGTCAACCCGGAAGCTCCCTCTTCTGGTTTACTTTCACGGCGGTGGCTTCTGCAATGGAAGTGCTTTCTCTCCCACTTATCACAACTACCTCAACTCTTTAGTCTCTGAAGCAAATGTTGTAGCTGTTTCTGTTGACTATAGGTTGGTGCCGGAGCACCCTCTTCCGGCTGCCTATGAAGATTCATGGGCCGCTCTCAAATGGGTGGAGTCCCATTTAGCCGGAACCGGCCCGGAAGAGTGGCTGAACCGGCATGCAGATTTGAACAGGGTTTTCTTTTCAGGTGATAGCGCTGGGGCTAACATAGCTCACCACATGGGTTTGAGAGTTGGGTCTGAGAAGTTGGTGGGTTTTAAGCTGAATGGGATTGTTCTGGGGCATCCATACTTTTGGGGTGAAGAACCAATAGGCGGAGAGGTAGCTTTGGGCGAGAGTCATAGAGAGCATTTGGCTGCTTTGTGGAGGTTTGCTTACCCTTTGACTAGTGGATCTGATGACCCGCTTTTTAATCCGGGTAAGGATCCGAAGTTGGGGGAGTTGGGTTGTGAGAAAGTGTTGGTCTGTGTTGCGGAGAAGGATGCGTTGAAAGATAGGGGGTGGTATTACAGTGAGGTGTTGAAGAAGAGTGGATGGAATGGAGTAGTAGAGGTTTTGGAAACAAAGGAGGAGCAGCATGTGTTCCATTTGATCAATCCTAGTTGTGACAATGCTGTGACCATGCTCAAGAAGATCGTTTCTTTCATGAATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

314

Amino Acids

34.69

Weight (kDa)

5.8

Isoelectric Point (pI)

26.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
COesterase	PF00135	57 - 177	5.8e-10	Carboxylesterase family
BD-FAE	PF20434	66 - 179	1.5e-13	BD-FAE
Abhydrolase_3	PF07859	74 - 293	3.9e-53	alpha/beta hydrolase fold

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AatII	GACGTC	1 cut(s)	135
AccB1I	GGYRCC	1 cut(s)	343
AccBSI	CCGCTC	1 cut(s)	389
AccI	GTMKAC	2 cut(s)	45, 63
AciI	CCGC	6 cut(s)	147, 237, 387, 606, 695, 764
AclWI	GGATC	4 cut(s)	98, 691, 710, 723
AcuI	CTGAAG	1 cut(s)	324
AcyI	GRCGYC	1 cut(s)	132
AfeI	AGCGCT	1 cut(s)	487
AfiI	CCNNNNNNNGG	6 cut(s)	73, 113, 220, 361, 605, 725
AgeI	ACCGGT	1 cut(s)	113
AgsI	TTSAA	4 cut(s)	122, 460, 781, 814
AhlI	ACTAGT	1 cut(s)	677
AjuI	GAANNNNNNNTTGG	2 cut(s)	102, 134
AleI	CACNNNNGTG	1 cut(s)	237
AluBI	AGCT	5 cut(s)	211, 320, 503, 553, 617
AluI	AGCT	5 cut(s)	211, 320, 503, 553, 617
Alw21I	GWGCWC	1 cut(s)	354
Alw26I	GTCTC	2 cut(s)	163, 304
AlwI	GGATC	4 cut(s)	98, 691, 710, 723
Aor51HI	AGCGCT	1 cut(s)	487
AoxI	GGCC	2 cut(s)	384, 424
ApeKI	GCWGC	3 cut(s)	365, 647, 865
ArsI	GACNNNNNNTTYG	2 cut(s)	120, 152
AsiGI	ACCGGT	1 cut(s)	113
AspLEI	GCGC	1 cut(s)	488
AspS9I	GGNCC	2 cut(s)	384, 425
AsuC2I	CCSGG	3 cut(s)	205, 428, 708
AsuHPI	GGTGA	3 cut(s)	491, 497, 602
BaeGI	GKGCMC	1 cut(s)	80
BamHI	GGATCC	1 cut(s)	715
BanI	GGYRCC	1 cut(s)	343
Bbv12I	GWGCWC	1 cut(s)	354
BbvI	GCAGC	3 cut(s)	352, 634, 877
BccI	CCATC	3 cut(s)	41, 107, 819
BceAI	ACGGC	1 cut(s)	250
BclI	TGATCA	1 cut(s)	882
BcnI	CCSGG	3 cut(s)	205, 428, 708
BcoDI	GTCTC	2 cut(s)	163, 304
BcuI	ACTAGT	1 cut(s)	677
BfaI	CTAG	3 cut(s)	14, 678, 891
BfmI	CTRYAG	1 cut(s)	334
BfoI	RGCGCY	1 cut(s)	489
BisI	GCNGC	4 cut(s)	366, 387, 648, 866
BlsI	GCNGC	4 cut(s)	367, 388, 649, 867
Bme1390I	CCNGG	3 cut(s)	205, 428, 708
BmgT120I	GGNCC	2 cut(s)	384, 425
BmiI	GGNNCC	3 cut(s)	345, 421, 717
BmrFI	CCNGG	3 cut(s)	205, 428, 708
BmsI	GCATC	3 cut(s)	104, 583, 763
BpuEI	CTTGAG	1 cut(s)	902
BpuMI	CCSGG	3 cut(s)	205, 428, 708
Bsa29I	ATCGAT	1 cut(s)	102
BsaHI	GRCGYC	1 cut(s)	132
BsaWI	WCCGGW	1 cut(s)	113
Bsc4I	CCNNNNNNNGG	6 cut(s)	73, 113, 220, 361, 605, 725
Bse118I	RCCGGY	3 cut(s)	113, 422, 444
Bse3DI	GCAATG	1 cut(s)	256
BseCI	ATCGAT	1 cut(s)	102
BseGI	GGATG	5 cut(s)	80, 95, 574, 778, 830
BseLI	CCNNNNNNNGG	6 cut(s)	73, 113, 220, 361, 605, 725
BseMI	GCAATG	1 cut(s)	256
BseMII	CTCAG	1 cut(s)	522
BseRI	GAGGAG	1 cut(s)	875
BseSI	GKGCMC	1 cut(s)	80
BseXI	GCAGC	3 cut(s)	352, 634, 877
BseYI	CCCAGC	1 cut(s)	488
Bsh1285I	CGRYCG	2 cut(s)	58, 67
BshFI	GGCC	2 cut(s)	386, 426
BshNI	GGYRCC	1 cut(s)	343
BshTI	ACCGGT	1 cut(s)	113
BshVI	ATCGAT	1 cut(s)	102
BsiEI	CGRYCG	2 cut(s)	58, 67
BsiHKAI	GWGCWC	1 cut(s)	354
BsiSI	CCGG	9 cut(s)	114, 205, 347, 362, 417, 423, 428, 445, 707
BslFI	GGGAC	1 cut(s)	391
BslI	CCNNNNNNNGG	6 cut(s)	73, 113, 220, 361, 605, 725
BsmAI	GTCTC	2 cut(s)	163, 304
BsmBI	CGTCTC	1 cut(s)	163
BsmFI	GGGAC	1 cut(s)	391
BsnI	GGCC	2 cut(s)	386, 426
Bsp1286I	GDGCHC	2 cut(s)	80, 354
Bsp143I	GATC	5 cut(s)	103, 683, 715, 882, 924
BspACI	CCGC	6 cut(s)	147, 237, 387, 606, 695, 764
BspANI	GGCC	2 cut(s)	386, 426
BspCNI	CTCAG	1 cut(s)	523
BspDI	ATCGAT	1 cut(s)	102
BspHI	TCATGA	1 cut(s)	936
BspLI	GGNNCC	3 cut(s)	345, 421, 717
BspPI	GGATC	4 cut(s)	98, 691, 710, 723
BspT107I	GGYRCC	1 cut(s)	343
BsrBI	CCGCTC	1 cut(s)	389
BsrDI	GCAATG	1 cut(s)	256
BsrFI	RCCGGY	3 cut(s)	113, 422, 444
BssAI	RCCGGY	3 cut(s)	113, 422, 444
BssMI	GATC	5 cut(s)	103, 683, 715, 882, 924
BssNAI	GTATAC	1 cut(s)	46
BssNI	GRCGYC	1 cut(s)	132
Bst1107I	GTATAC	1 cut(s)	46
Bst4CI	ACNGT	2 cut(s)	56, 803
Bst6I	CTCTTC	4 cut(s)	222, 363, 426, 812
BstACI	GRCGYC	1 cut(s)	132
BstC8I	GCNNGC	1 cut(s)	450
BstDEI	CTNAG	1 cut(s)	531
BstF5I	GGATG	5 cut(s)	80, 95, 574, 778, 830
BstH2I	RGCGCY	1 cut(s)	489
BstHHI	GCGC	1 cut(s)	488
BstKTI	GATC	5 cut(s)	106, 686, 718, 885, 927
BstMAI	GTCTC	2 cut(s)	163, 304
BstMBI	GATC	5 cut(s)	103, 683, 715, 882, 924
BstMCI	CGRYCG	2 cut(s)	58, 67
BstMWI	GCNNNNNNNGC	2 cut(s)	445, 500
BstNSI	RCATGY	2 cut(s)	452, 872
BstSCI	CCNGG	3 cut(s)	203, 426, 706
BstSFI	CTRYAG	1 cut(s)	334
BstSLI	GKGCMC	1 cut(s)	80
BstV1I	GCAGC	3 cut(s)	352, 634, 877
BstX2I	RGATCY	2 cut(s)	683, 715
BstXI	CCANNNNNNTGG	1 cut(s)	585
BstYI	RGATCY	2 cut(s)	683, 715
BstZ17I	GTATAC	1 cut(s)	46
Bsu15I	ATCGAT	1 cut(s)	102
BsuRI	GGCC	2 cut(s)	386, 426
BsuTUI	ATCGAT	1 cut(s)	102
BtgZI	GCGATG	1 cut(s)	21
BtsCI	GGATG	5 cut(s)	80, 95, 574, 778, 830
BtsIMutI	CAGTG	1 cut(s)	808
Cac8I	GCNNGC	1 cut(s)	450
CciI	TCATGA	1 cut(s)	936
CfoI	GCGC	1 cut(s)	488
Cfr10I	RCCGGY	3 cut(s)	113, 422, 444
Cfr13I	GGNCC	2 cut(s)	384, 425
ClaI	ATCGAT	1 cut(s)	102
CspAI	ACCGGT	1 cut(s)	113
CviAII	CATG	7 cut(s)	20, 381, 449, 511, 869, 913, 937
DdeI	CTNAG	1 cut(s)	531
DpnI	GATC	5 cut(s)	105, 685, 717, 884, 926
DpnII	GATC	5 cut(s)	103, 683, 715, 882, 924
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
Eam1104I	CTCTTC	4 cut(s)	222, 363, 426, 812
EarI	CTCTTC	4 cut(s)	222, 363, 426, 812
EciI	GGCGGA	1 cut(s)	621
Eco47III	AGCGCT	1 cut(s)	487
Eco57I	CTGAAG	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	163
FaeI	CATG	7 cut(s)	23, 384, 452, 514, 872, 916, 940
FaqI	GGGAC	1 cut(s)	391
FatI	CATG	7 cut(s)	19, 380, 448, 510, 868, 912, 936
FauI	CCCGC	1 cut(s)	702
FbaI	TGATCA	1 cut(s)	882
FblI	GTMKAC	2 cut(s)	45, 63
Fnu4HI	GCNGC	4 cut(s)	366, 387, 648, 866
FokI	GGATG	5 cut(s)	67, 82, 561, 785, 837
Fsp4HI	GCNGC	4 cut(s)	366, 387, 648, 866
FspBI	CTAG	3 cut(s)	14, 678, 891
GlaI	GCGC	1 cut(s)	487
GluI	GCNGC	4 cut(s)	366, 387, 648, 866
GsaI	CCCAGC	1 cut(s)	492
HaeII	RGCGCY	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	386, 426
HapII	CCGG	9 cut(s)	114, 205, 347, 362, 417, 423, 428, 445, 707
HhaI	GCGC	1 cut(s)	488
Hin1I	GRCGYC	1 cut(s)	132
Hin1II	CATG	7 cut(s)	23, 384, 452, 514, 872, 916, 940
Hin6I	GCGC	1 cut(s)	486
HinP1I	GCGC	1 cut(s)	486
HincII	GTYRAC	3 cut(s)	64, 201, 331
HindII	GTYRAC	3 cut(s)	64, 201, 331
HinfI	GANTC	6 cut(s)	60, 69, 197, 377, 404, 628
HpaII	CCGG	9 cut(s)	114, 205, 347, 362, 417, 423, 428, 445, 707
HphI	GGTGA	3 cut(s)	491, 497, 602
Hpy166II	GTNNAC	5 cut(s)	46, 64, 201, 226, 331
Hpy188I	TCNGA	4 cut(s)	304, 532, 688, 720
Hpy188III	TCNNGA	2 cut(s)	919, 937
Hpy8I	GTNNAC	5 cut(s)	46, 64, 201, 226, 331
Hpy99I	CGWCG	1 cut(s)	137
HpyAV	CCTTC	1 cut(s)	763
HpyCH4III	ACNGT	2 cut(s)	56, 803
HpyCH4IV	ACGT	1 cut(s)	132
HpyCH4V	TGCA	3 cut(s)	95, 249, 452
HpyF10VI	GCNNNNNNNGC	2 cut(s)	445, 500
HpyF3I	CTNAG	1 cut(s)	531
HpySE526I	ACGT	1 cut(s)	132
Hsp92I	GRCGYC	1 cut(s)	132
Hsp92II	CATG	7 cut(s)	23, 384, 452, 514, 872, 916, 940
HspAI	GCGC	1 cut(s)	486
Ksp22I	TGATCA	1 cut(s)	882
Kzo9I	GATC	5 cut(s)	103, 683, 715, 882, 924
LmnI	GCTCC	3 cut(s)	216, 349, 862
Lsp1109I	GCAGC	3 cut(s)	352, 634, 877
LweI	GCATC	3 cut(s)	104, 583, 763
MaeI	CTAG	3 cut(s)	14, 678, 891
MaeII	ACGT	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	896, 907
MalI	GATC	5 cut(s)	105, 685, 717, 884, 926
MbiI	CCGCTC	1 cut(s)	389
MboI	GATC	5 cut(s)	103, 683, 715, 882, 924
MboII	GAAGA	8 cut(s)	209, 350, 386, 443, 605, 826, 829, 934
MflI	RGATCY	2 cut(s)	683, 715
MhlI	GDGCHC	2 cut(s)	80, 354
MluCI	AATT	1 cut(s)	940
MlyI	GAGTC	5 cut(s)	63, 69, 206, 413, 637
MnlI	CCTC	8 cut(s)	225, 296, 366, 604, 651, 799, 835, 853
MseI	TTAA	2 cut(s)	549, 702
MslI	CAYNNNNRTG	1 cut(s)	237
MspI	CCGG	9 cut(s)	114, 205, 347, 362, 417, 423, 428, 445, 707
MspR9I	CCNGG	3 cut(s)	205, 428, 708
MwoI	GCNNNNNNNGC	2 cut(s)	445, 500
NciI	CCSGG	3 cut(s)	205, 428, 708
NdeII	GATC	5 cut(s)	103, 683, 715, 882, 924
NlaIII	CATG	7 cut(s)	23, 384, 452, 514, 872, 916, 940
NlaIV	GGNNCC	3 cut(s)	345, 421, 717
NmuCI	GTSAC	2 cut(s)	896, 907
NspI	RCATGY	2 cut(s)	452, 872
OliI	CACNNNNGTG	1 cut(s)	237
PaeI	GCATGC	1 cut(s)	452
PagI	TCATGA	1 cut(s)	936
PcsI	WCGNNNNNNNCGW	2 cut(s)	60, 64
PfeI	GAWTC	1 cut(s)	377
PflFI	GACNNNGTC	1 cut(s)	134
PinAI	ACCGGT	1 cut(s)	113
PkrI	GCNGC	4 cut(s)	367, 388, 649, 867
PleI	GAGTC	5 cut(s)	63, 68, 205, 412, 636
PpsI	GAGTC	5 cut(s)	63, 68, 205, 412, 636
PspFI	CCCAGC	1 cut(s)	488
PspN4I	GGNNCC	3 cut(s)	345, 421, 717
PspPI	GGNCC	2 cut(s)	384, 425
PsuI	RGATCY	2 cut(s)	683, 715
PsyI	GACNNNGTC	1 cut(s)	134
RseI	CAYNNNNRTG	1 cut(s)	237
SalI	GTCGAC	1 cut(s)	62
SaqAI	TTAA	2 cut(s)	549, 702
SatI	GCNGC	4 cut(s)	366, 387, 648, 866
Sau3AI	GATC	5 cut(s)	103, 683, 715, 882, 924
Sau96I	GGNCC	2 cut(s)	384, 425
SchI	GAGTC	5 cut(s)	63, 69, 206, 413, 637
ScrFI	CCNGG	3 cut(s)	205, 428, 708
SduI	GDGCHC	2 cut(s)	80, 354
SfaNI	GCATC	3 cut(s)	104, 583, 763
SfcI	CTRYAG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	237
SmlI	CTYRAG	1 cut(s)	917
SmoI	CTYRAG	1 cut(s)	917
SpeI	ACTAGT	1 cut(s)	677
SphI	GCATGC	1 cut(s)	452
Sse9I	AATT	1 cut(s)	940
SsiI	CCGC	6 cut(s)	147, 237, 387, 606, 695, 764
SspMI	CTAG	3 cut(s)	14, 678, 891
StyD4I	CCNGG	3 cut(s)	203, 426, 706
TaaI	ACNGT	2 cut(s)	56, 803
TaiI	ACGT	1 cut(s)	135
TaqI	TCGA	3 cut(s)	58, 63, 102
TaqII	GACCGA	1 cut(s)	81
TasI	AATT	1 cut(s)	940
TauI	GCSGC	1 cut(s)	389
TfiI	GAWTC	1 cut(s)	377
Tru1I	TTAA	2 cut(s)	549, 702
Tru9I	TTAA	2 cut(s)	549, 702
TscAI	CASTG	1 cut(s)	808
TseFI	GTSAC	2 cut(s)	896, 907
TseI	GCWGC	3 cut(s)	365, 647, 865
Tsp45I	GTSAC	2 cut(s)	896, 907
TspDTI	ATGAA	4 cut(s)	24, 369, 387, 925
TspRI	CASTG	1 cut(s)	808
Tth111I	GACNNNGTC	1 cut(s)	134
XceI	RCATGY	2 cut(s)	452, 872
XmiI	GTMKAC	2 cut(s)	45, 63
XspI	CTAG	3 cut(s)	14, 678, 891
ZraI	GACGTC	1 cut(s)	133

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.