Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

3078959 .. 3082840

Gene Structure 3882 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0039500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGACTCGGCTTCAGGTCATGTGAACGATCCAGTAGGCGATCATGTTGAAACACTTGTTGAAGAAGGGGTGGGCCTTGATGCAATTGATAAAGCCATCAATCTCTACATTTCGGAATCCAAGGGAGTTGCTTCAGCCAAGATGGAAGCGAGTCAGAACCCCGGACGGTTACGCGAGTGCCTTGCAAAGGTGACGGAGGTCCCCCATTATGCCCGCATGTCTGAGGAATGGCTTGCAGAAACTAAGAGAAGGGACCTTTGTATGATGAAAGCTAAAAGGTTGGCAAGGGAGAAGGAGGCTAAAAGGTCGGCAAGGGAGAAGAAAGCATTCTGTTTGCTTGATGGCTTTGCTGTTTTGTTTGGAACTTGGAAGGCTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

125

Amino Acids

13.9

Weight (kDa)

7.72

Isoelectric Point (pI)

59.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	174
AciI	CCGC	1 cut(s)	214
AclWI	GGATC	1 cut(s)	23
AcuI	CTGAAG	1 cut(s)	117
AfiI	CCNNNNNNNGG	1 cut(s)	187
AgsI	TTSAA	2 cut(s)	50, 62
AluBI	AGCT	1 cut(s)	272
AluI	AGCT	1 cut(s)	272
AlwI	GGATC	1 cut(s)	23
AoxI	GGCC	1 cut(s)	73
Asp700I	GAANNNNTTC	1 cut(s)	326
AspS9I	GGNCC	3 cut(s)	73, 199, 253
AsuC2I	CCSGG	1 cut(s)	162
AsuHPI	GGTGA	1 cut(s)	202
AvaII	GGWCC	2 cut(s)	199, 253
BccI	CCATC	3 cut(s)	104, 136, 335
BcgI	CGANNNNNNTGC	2 cut(s)	164, 198
BcnI	CCSGG	1 cut(s)	162
Bme1390I	CCNGG	1 cut(s)	162
Bme18I	GGWCC	2 cut(s)	199, 253
BmgT120I	GGNCC	3 cut(s)	73, 199, 253
BmiI	GGNNCC	2 cut(s)	201, 254
BmrFI	CCNGG	1 cut(s)	162
BmsI	GCATC	1 cut(s)	70
BoxI	GACNNNNGTC	1 cut(s)	197
BpuMI	CCSGG	1 cut(s)	162
BsaJI	CCNNGG	2 cut(s)	120, 160
Bsc4I	CCNNNNNNNGG	1 cut(s)	187
Bse1I	ACTGG	1 cut(s)	32
BseDI	CCNNGG	2 cut(s)	120, 160
BseLI	CCNNNNNNNGG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	213
BseNI	ACTGG	1 cut(s)	32
Bsh1236I	CGCG	1 cut(s)	174
BshFI	GGCC	1 cut(s)	75
BsiSI	CCGG	1 cut(s)	162
BslFI	GGGAC	2 cut(s)	185, 266
BslI	CCNNNNNNNGG	1 cut(s)	187
BsmFI	GGGAC	2 cut(s)	185, 266
BsmI	GAATGC	1 cut(s)	326
BsnI	GGCC	1 cut(s)	75
Bsp143I	GATC	2 cut(s)	28, 40
BspACI	CCGC	1 cut(s)	214
BspANI	GGCC	1 cut(s)	75
BspCNI	CTCAG	1 cut(s)	214
BspFNI	CGCG	1 cut(s)	174
BspLI	GGNNCC	2 cut(s)	201, 254
BspPI	GGATC	1 cut(s)	23
BsrI	ACTGG	1 cut(s)	32
BssECI	CCNNGG	2 cut(s)	120, 160
BssMI	GATC	2 cut(s)	28, 40
BssT1I	CCWWGG	1 cut(s)	120
Bst4CI	ACNGT	1 cut(s)	168
BstC8I	GCNNGC	2 cut(s)	214, 234
BstDEI	CTNAG	3 cut(s)	222, 243, 375
BstENI	CCTNNNNNAGG	1 cut(s)	185
BstFNI	CGCG	1 cut(s)	174
BstKTI	GATC	2 cut(s)	31, 43
BstMBI	GATC	2 cut(s)	28, 40
BstNSI	RCATGY	1 cut(s)	220
BstPAI	GACNNNNGTC	1 cut(s)	197
BstSCI	CCNGG	1 cut(s)	160
BstUI	CGCG	1 cut(s)	174
BsuRI	GGCC	1 cut(s)	75
Cac8I	GCNNGC	2 cut(s)	214, 234
Cfr13I	GGNCC	3 cut(s)	73, 199, 253
CviAII	CATG	3 cut(s)	20, 44, 217
CviJI	RGCY	9 cut(s)	11, 75, 95, 137, 232, 272, 299, 345, 374
CviKI_1	RGCY	9 cut(s)	11, 75, 95, 137, 232, 272, 299, 345, 374
DdeI	CTNAG	3 cut(s)	222, 243, 375
DpnI	GATC	2 cut(s)	30, 42
DpnII	GATC	2 cut(s)	28, 40
Eco130I	CCWWGG	1 cut(s)	120
Eco47I	GGWCC	2 cut(s)	199, 253
Eco57I	CTGAAG	1 cut(s)	117
EcoNI	CCTNNNNNAGG	1 cut(s)	185
EcoO109I	RGGNCCY	2 cut(s)	199, 253
EcoT14I	CCWWGG	1 cut(s)	120
ErhI	CCWWGG	1 cut(s)	120
FaeI	CATG	3 cut(s)	23, 47, 220
FaiI	YATR	5 cut(s)	21, 45, 210, 218, 263
FaqI	GGGAC	2 cut(s)	185, 266
FatI	CATG	3 cut(s)	19, 43, 216
FauI	CCCGC	1 cut(s)	221
HaeIII	GGCC	1 cut(s)	75
HapII	CCGG	1 cut(s)	162
Hin1II	CATG	3 cut(s)	23, 47, 220
HinfI	GANTC	3 cut(s)	5, 116, 151
HpaII	CCGG	1 cut(s)	162
HphI	GGTGA	1 cut(s)	202
Hpy166II	GTNNAC	1 cut(s)	25
Hpy188I	TCNGA	3 cut(s)	115, 156, 223
Hpy8I	GTNNAC	1 cut(s)	25
HpyAV	CCTTC	4 cut(s)	59, 243, 286, 364
HpyCH4III	ACNGT	1 cut(s)	168
HpyCH4V	TGCA	3 cut(s)	83, 185, 236
HpyF3I	CTNAG	3 cut(s)	222, 243, 375
Hsp92II	CATG	3 cut(s)	23, 47, 220
Kzo9I	GATC	2 cut(s)	28, 40
LpnPI	CCDG	2 cut(s)	45, 175
LweI	GCATC	1 cut(s)	70
MaeIII	GTNAC	2 cut(s)	168, 190
MalI	GATC	2 cut(s)	30, 42
MboI	GATC	2 cut(s)	28, 40
MboII	GAAGA	2 cut(s)	74, 331
MfeI	CAATTG	1 cut(s)	84
MluCI	AATT	1 cut(s)	84
MlyI	GAGTC	1 cut(s)	160
MnlI	CCTC	3 cut(s)	190, 217, 289
MroXI	GAANNNNTTC	1 cut(s)	326
MspI	CCGG	1 cut(s)	162
MspR9I	CCNGG	1 cut(s)	162
MunI	CAATTG	1 cut(s)	84
Mva1269I	GAATGC	1 cut(s)	326
MvnI	CGCG	1 cut(s)	174
NciI	CCSGG	1 cut(s)	162
NdeII	GATC	2 cut(s)	28, 40
NlaIII	CATG	3 cut(s)	23, 47, 220
NlaIV	GGNNCC	2 cut(s)	201, 254
NmuCI	GTSAC	1 cut(s)	190
NspI	RCATGY	1 cut(s)	220
PctI	GAATGC	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	326
PfeI	GAWTC	1 cut(s)	116
PleI	GAGTC	1 cut(s)	159
PpsI	GAGTC	1 cut(s)	159
PpuMI	RGGWCCY	2 cut(s)	199, 253
PshAI	GACNNNNGTC	1 cut(s)	197
Psp5II	RGGWCCY	2 cut(s)	199, 253
PspN4I	GGNNCC	2 cut(s)	201, 254
PspPI	GGNCC	3 cut(s)	73, 199, 253
PspPPI	RGGWCCY	2 cut(s)	199, 253
Sau3AI	GATC	2 cut(s)	28, 40
Sau96I	GGNCC	3 cut(s)	73, 199, 253
SchI	GAGTC	1 cut(s)	160
ScrFI	CCNGG	1 cut(s)	162
SetI	ASST	7 cut(s)	19, 192, 201, 258, 274, 281, 308
SfaNI	GCATC	1 cut(s)	70
SinI	GGWCC	2 cut(s)	199, 253
Sse9I	AATT	1 cut(s)	84
SsiI	CCGC	1 cut(s)	214
StyD4I	CCNGG	1 cut(s)	160
StyI	CCWWGG	1 cut(s)	120
TaaI	ACNGT	1 cut(s)	168
TasI	AATT	1 cut(s)	84
TfiI	GAWTC	1 cut(s)	116
TseFI	GTSAC	1 cut(s)	190
Tsp45I	GTSAC	1 cut(s)	190
TspDTI	ATGAA	1 cut(s)	281
TspGWI	ACGGA	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	199, 253
XagI	CCTNNNNNAGG	1 cut(s)	185
XceI	RCATGY	1 cut(s)	220
XmnI	GAANNNNTTC	1 cut(s)	326

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.