Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6A

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

36701374 .. 36702024

Gene Structure 651 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6AG205700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGCTGCCATTCCTCTGGGCCTGCACCAGCGTGATGTTATCGGCATTGCGGAGACTGGTTCTGGTAAGACTGCTGCCTTTGTTCTTCCTATGTTGACATATATTTCTAGGTTGCCTCCTATTAGTGAAGAGAATGAGGCTGAAGGGCCATTTGCTGTTGTTATGGCACCTACTCGTGAGCTTGCGCAGCAGATTGAGGAAGAGACCCTGAAGTTTGTGCATTGCTTGGGTATTAAAGTGGTTTCTATTGTTGGTGGGCAGTCAATTGAGGAGCAGGGTTTTAAGATTAGGCAAGGATGTGAGGTTGTTATTGCCACGCCGGGGCGGTTGATTGATTGTTTGGAGAGGCGTTATGCTGTTTTGAATCGGTGCAATTATGTTGTTCTTGATGAGGCTGATAGGATGATTGATATGGGGTTTGAGCCGCAGGTTGTAAGTGTTTTGGATGCAATGCCTTCCAGCAATTTCAAACCTGAGAATGAGGATGAAGAGCTTGATGACAAGAAGATTTACAGAACCACTTATATGTTTAGTGCCACCATGCCTCCTGCGGTGGAGCGACTTGCTTGTAAGTATTTGAGGAATCCTGTTATGGTTACAATTGGCATAGCTGGAAAGACCACCGATTTGATCACTCAGAATGTGGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

216

Amino Acids

23.88

Weight (kDa)

4.85

Isoelectric Point (pI)

45.78

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	2 - 187	5.1e-44	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	418
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	4 cut(s)	50, 325, 425, 551
AcuI	CTGAAG	2 cut(s)	162, 230
AfiI	CCNNNNNNNGG	1 cut(s)	321
AgsI	TTSAA	2 cut(s)	364, 469
AleI	CACNNNNGTG	1 cut(s)	30
AluBI	AGCT	3 cut(s)	181, 493, 611
AluI	AGCT	3 cut(s)	181, 493, 611
Alw26I	GTCTC	2 cut(s)	47, 197
AoxI	GGCC	2 cut(s)	19, 146
ApeKI	GCWGC	3 cut(s)	5, 74, 187
ArsI	GACNNNNNNTTYG	2 cut(s)	610, 642
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	2 cut(s)	19, 146
AsuC2I	CCSGG	1 cut(s)	321
BanI	GGYRCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	61, 199
BclI	TGATCA	1 cut(s)	630
BcnI	CCSGG	1 cut(s)	321
BcoDI	GTCTC	2 cut(s)	47, 197
BfaI	CTAG	1 cut(s)	108
BfuAI	ACCTGC	1 cut(s)	418
BisI	GCNGC	4 cut(s)	6, 75, 188, 425
BlsI	GCNGC	4 cut(s)	7, 76, 189, 426
Bme1390I	CCNGG	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	19, 146
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	1 cut(s)	321
BmsI	GCATC	1 cut(s)	436
BpuMI	CCSGG	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	320
BsaXI	ACNNNNNCTCC	2 cut(s)	529, 559
Bsc4I	CCNNNNNNNGG	1 cut(s)	321
Bse1I	ACTGG	1 cut(s)	61
Bse3DI	GCAATG	3 cut(s)	45, 220, 456
BseDI	CCNNGG	1 cut(s)	320
BseGI	GGATG	4 cut(s)	302, 408, 451, 490
BseLI	CCNNNNNNNGG	1 cut(s)	321
BseMI	GCAATG	3 cut(s)	45, 220, 456
BseMII	CTCAG	2 cut(s)	465, 650
BseNI	ACTGG	1 cut(s)	61
BseRI	GAGGAG	1 cut(s)	284
BseXI	GCAGC	2 cut(s)	61, 199
BsgI	GTGCAG	1 cut(s)	8
BshFI	GGCC	2 cut(s)	21, 148
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	320
BslI	CCNNNNNNNGG	1 cut(s)	321
BsmAI	GTCTC	2 cut(s)	47, 197
BsnI	GGCC	2 cut(s)	21, 148
Bso31I	GGTCTC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	630
BspACI	CCGC	4 cut(s)	50, 325, 425, 551
BspANI	GGCC	2 cut(s)	21, 148
BspCNI	CTCAG	2 cut(s)	466, 649
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	418
BspQI	GCTCTTC	1 cut(s)	483
BspT107I	GGYRCC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	3 cut(s)	45, 220, 456
BsrI	ACTGG	1 cut(s)	61
BssECI	CCNNGG	1 cut(s)	320
BssMI	GATC	1 cut(s)	630
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
Bst6I	CTCTTC	3 cut(s)	123, 195, 483
BstC8I	GCNNGC	2 cut(s)	23, 183
BstDEI	CTNAG	2 cut(s)	474, 636
BstF5I	GGATG	4 cut(s)	302, 408, 451, 490
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	633
BstMAI	GTCTC	2 cut(s)	47, 197
BstMBI	GATC	1 cut(s)	630
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstSCI	CCNGG	1 cut(s)	319
BstV1I	GCAGC	2 cut(s)	61, 199
BstXI	CCANNNNNNTGG	1 cut(s)	16
BsuRI	GGCC	2 cut(s)	21, 148
BtsCI	GGATG	4 cut(s)	302, 408, 451, 490
BveI	ACCTGC	1 cut(s)	418
Cac8I	GCNNGC	2 cut(s)	23, 183
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	2 cut(s)	19, 146
CviAII	CATG	1 cut(s)	541
CviJI	RGCY	9 cut(s)	5, 21, 140, 148, 181, 395, 424, 493, 611
CviKI_1	RGCY	9 cut(s)	5, 21, 140, 148, 181, 395, 424, 493, 611
DdeI	CTNAG	2 cut(s)	474, 636
DpnI	GATC	1 cut(s)	632
DpnII	GATC	1 cut(s)	630
Eam1104I	CTCTTC	3 cut(s)	123, 195, 483
EarI	CTCTTC	3 cut(s)	123, 195, 483
Eco31I	GGTCTC	1 cut(s)	197
Eco57I	CTGAAG	2 cut(s)	162, 230
FaeI	CATG	1 cut(s)	544
FatI	CATG	1 cut(s)	540
FbaI	TGATCA	1 cut(s)	630
Fnu4HI	GCNGC	4 cut(s)	6, 75, 188, 425
FokI	GGATG	4 cut(s)	309, 415, 458, 497
Fsp4HI	GCNGC	4 cut(s)	6, 75, 188, 425
FspBI	CTAG	1 cut(s)	108
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	6, 75, 188, 425
HaeIII	GGCC	2 cut(s)	21, 148
HapII	CCGG	1 cut(s)	320
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	1 cut(s)	544
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	1 cut(s)	96
HindII	GTYRAC	1 cut(s)	96
HinfI	GANTC	2 cut(s)	364, 583
HpaII	CCGG	1 cut(s)	320
Hpy166II	GTNNAC	1 cut(s)	96
Hpy188I	TCNGA	2 cut(s)	639, 650
Hpy188III	TCNNGA	2 cut(s)	176, 386
Hpy8I	GTNNAC	1 cut(s)	96
HpyAV	CCTTC	2 cut(s)	137, 465
HpyCH4V	TGCA	4 cut(s)	25, 220, 372, 449
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	2 cut(s)	474, 636
Hsp92II	CATG	1 cut(s)	544
HspAI	GCGC	1 cut(s)	185
Ksp22I	TGATCA	1 cut(s)	630
Kzo9I	GATC	1 cut(s)	630
LguI	GCTCTTC	1 cut(s)	483
LmnI	GCTCC	2 cut(s)	271, 556
Lsp1109I	GCAGC	2 cut(s)	61, 199
LweI	GCATC	1 cut(s)	436
MaeI	CTAG	1 cut(s)	108
MaeIII	GTNAC	1 cut(s)	595
MalI	GATC	1 cut(s)	632
MboI	GATC	1 cut(s)	630
MboII	GAAGA	5 cut(s)	77, 140, 212, 500, 517
MfeI	CAATTG	2 cut(s)	264, 600
MluCI	AATT	4 cut(s)	264, 373, 463, 600
MseI	TTAA	2 cut(s)	234, 282
MslI	CAYNNNNRTG	2 cut(s)	30, 524
MspI	CCGG	1 cut(s)	320
MspR9I	CCNGG	1 cut(s)	321
MunI	CAATTG	2 cut(s)	264, 600
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	321
NdeII	GATC	1 cut(s)	630
NlaIII	CATG	1 cut(s)	544
NlaIV	GGNNCC	1 cut(s)	168
NsbI	TGCGCA	1 cut(s)	186
OliI	CACNNNNGTG	1 cut(s)	30
PciSI	GCTCTTC	1 cut(s)	483
PfeI	GAWTC	2 cut(s)	364, 583
PkrI	GCNGC	4 cut(s)	7, 76, 189, 426
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	2 cut(s)	19, 146
RseI	CAYNNNNRTG	2 cut(s)	30, 524
SapI	GCTCTTC	1 cut(s)	483
SaqAI	TTAA	2 cut(s)	234, 282
SatI	GCNGC	4 cut(s)	6, 75, 188, 425
Sau3AI	GATC	1 cut(s)	630
Sau96I	GGNCC	2 cut(s)	19, 146
ScrFI	CCNGG	1 cut(s)	321
SetI	ASST	8 cut(s)	113, 172, 183, 306, 432, 475, 495, 613
SfaNI	GCATC	1 cut(s)	436
SmiMI	CAYNNNNRTG	2 cut(s)	30, 524
Sse9I	AATT	4 cut(s)	264, 373, 463, 600
SsiI	CCGC	4 cut(s)	50, 325, 425, 551
SspMI	CTAG	1 cut(s)	108
StyD4I	CCNGG	1 cut(s)	319
TasI	AATT	4 cut(s)	264, 373, 463, 600
TauI	GCSGC	1 cut(s)	427
TfiI	GAWTC	2 cut(s)	364, 583
Tru1I	TTAA	2 cut(s)	234, 282
Tru9I	TTAA	2 cut(s)	234, 282
TseI	GCWGC	3 cut(s)	5, 74, 187
TspDTI	ATGAA	1 cut(s)	501
XspI	CTAG	1 cut(s)	108

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.