Rh2BG086300

Belongs to the DEAD box helicase family

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
6732407 .. 6733827
1421 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG086300.1

Sequence Viewer

Length: 1176 bp
ATGGGGGCAATCCCTCTCGGTTTGCAACAGCGTGATGTTATTGGCATTGCGGAGACTGGTTCTGGCAAGACTGCTGCCTTTGTTCTTCCTATGTTAAGTTATATTTCTAGGTTGCCTCCTATTAGTGAAGAGAATGAGGCTGAAGGGCCTTATGCTGTGGTTTTGGCGCCTACTCGGGAGCTTGCGCAGCAGATTGAGAAAGAGACTGTCAAGTTTGCGCATGACTTGGGAATCAAGGTGGTTTCTATTGTTGGTGGGAAGTCGATTGAGGAACAGGGTTTTAAAATCGCACAAGGATGTGAGGTTGTCATTGCCATGCCGGGGCGTTTGATTGATTGTTTGCAGAGGCGTCTTGCTGTTTTGAATCAGTGCAACTATGTAGTTCTTGACGAGGCTGATACGATGATAGATAAGGGACTTGAAGACCAGGTTGTTGGTGTTTTGGATGCAATGCCTTCGAGCAACTTGAAACCTGAGAATGAAGATGAAGAGCTAGATGACAAGAAGATTTACAGAACCACTTATATGTTCAGTGCAACTATGCCTCCTGCTGTGGAGCGACTCACCCGCAATTACTTGAGGAATCCTGTTGTAGTCACCATTGGCAGTGCCGGAACCACCACTGATTTGATCACTCAGAATGTGGTCATGATCAGCAAGGAGTCGGAAAAGTTTGAAAAGCTAAAGAGATTGCTTGATGAAGTACTTGGTGATCATAAGACTGCTATTGTATTTGCTAATACCAAGAAAAATGTAAATATTCTGGCGAAGAGTTTGAGCAAGAATGGATATCATCATGTGATTACTTTGCATTCGGATTTACAACAATCACAGAGAGACTCTAACCTTGAAGGTTTTAAGACCAAGAGATATAATGTCCTCGTTGCAACAGATGCTGCAGGACGAGGTATTGATGTATCTGATGTGGCACATGTAATTAATTATGAAATGCCACCGAAGATAGAAAAGTATACCCATCGTATTGGACGTACCGGTCGTGCAGGAAAGACTGGTTTAGCCACAACATTCTTGACAATGCAAGACACTGGGGTGTTCTATGATCTCAAGAAGATGCTCATTCAGAGTAACAGTCCTGTTCCTCCTGAACTAGCGAGACATGAAGCCTCAAAGTACAAGCCTGGCACAATTCCTGACAGACCACCGAGGCATAACTAG

Protein Analysis

391

Amino Acids

43.18

Weight (kDa)

6.77

Isoelectric Point (pI)

41.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DEAD PF00270 3 - 187 6.1e-41 DEAD/DEAH box helicase
Helicase_C PF00271 224 - 335 1.6e-30 Helicase conserved C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 993
Acc16I TGCGCA 2 cut(s) 186, 219
AccB1I GGYRCC 1 cut(s) 166
AccI GTMKAC 1 cut(s) 971
AciI CCGC 2 cut(s) 50, 568
AcuI CTGAAG 1 cut(s) 162
AcyI GRCGYC 2 cut(s) 167, 349
AfaI GTAC 3 cut(s) 705, 991, 1133
AfiI CCNNNNNNNGG 1 cut(s) 321
AflIII ACRYGT 1 cut(s) 931
AgeI ACCGGT 1 cut(s) 992
AgsI TTSAA 5 cut(s) 364, 422, 469, 677, 851
AjnI CCWGG 2 cut(s) 426, 1138
AleI CACNNNNGTG 1 cut(s) 1049
AluBI AGCT 3 cut(s) 181, 493, 682
AluI AGCT 3 cut(s) 181, 493, 682
Alw26I GTCTC 4 cut(s) 47, 197, 831, 1108
AlwNI CAGNNNCTG 1 cut(s) 896
Ama87I CYCGRG 1 cut(s) 174
AoxI GGCC 1 cut(s) 146
ApeKI GCWGC 3 cut(s) 74, 187, 896
AseI ATTAAT 1 cut(s) 939
AsiGI ACCGGT 1 cut(s) 992
AspLEI GCGC 3 cut(s) 169, 187, 220
AspS9I GGNCC 1 cut(s) 146
AsuC2I CCSGG 1 cut(s) 321
AsuHPI GGTGA 3 cut(s) 556, 589, 722
AvaI CYCGRG 1 cut(s) 174
BanI GGYRCC 1 cut(s) 166
BbsI GAAGAC 1 cut(s) 429
BbvI GCAGC 3 cut(s) 61, 199, 883
BccI CCATC 1 cut(s) 984
BcgI CGANNNNNNTGC 2 cut(s) 438, 472
BciT130I CCWGG 2 cut(s) 428, 1140
BclI TGATCA 3 cut(s) 630, 651, 712
BcnI CCSGG 1 cut(s) 321
BcoDI GTCTC 4 cut(s) 47, 197, 831, 1108
BfaI CTAG 4 cut(s) 108, 494, 1109, 1174
BfmI CTRYAG 1 cut(s) 897
BfoI RGCGCY 1 cut(s) 170
BisI GCNGC 3 cut(s) 75, 188, 897
BlsI GCNGC 3 cut(s) 76, 189, 898
BmcAI AGTACT 1 cut(s) 705
Bme1390I CCNGG 3 cut(s) 321, 428, 1140
BmeT110I CYCGRG 1 cut(s) 174
BmgT120I GGNCC 1 cut(s) 146
BmiI GGNNCC 2 cut(s) 168, 616
BmrFI CCNGG 3 cut(s) 321, 428, 1140
BmrI ACTGGG 1 cut(s) 1056
BmsI GCATC 3 cut(s) 436, 883, 1062
BmuI ACTGGG 1 cut(s) 1056
BpiI GAAGAC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 598, 1049
BpuMI CCSGG 1 cut(s) 321
BsaHI GRCGYC 2 cut(s) 167, 349
BsaJI CCNNGG 2 cut(s) 320, 1163
BsaWI WCCGGW 1 cut(s) 992
BsaXI ACNNNNNCTCC 2 cut(s) 529, 559
Bsc4I CCNNNNNNNGG 1 cut(s) 321
Bse118I RCCGGY 1 cut(s) 992
Bse1I ACTGG 3 cut(s) 61, 1015, 1051
Bse3DI GCAATG 3 cut(s) 45, 309, 456
BseBI CCWGG 2 cut(s) 428, 1140
BseDI CCNNGG 2 cut(s) 320, 1163
BseGI GGATG 2 cut(s) 302, 451
BseLI CCNNNNNNNGG 1 cut(s) 321
BseMI GCAATG 3 cut(s) 45, 309, 456
BseMII CTCAG 2 cut(s) 465, 650
BseNI ACTGG 3 cut(s) 61, 1015, 1051
BseXI GCAGC 3 cut(s) 61, 199, 883
BsgI GTGCAG 1 cut(s) 1020
Bsh1285I CGRYCG 1 cut(s) 997
BshFI GGCC 1 cut(s) 148
BshNI GGYRCC 1 cut(s) 166
BshTI ACCGGT 1 cut(s) 992
BsiEI CGRYCG 1 cut(s) 997
BsiHKCI CYCGRG 1 cut(s) 174
BsiSI CCGG 3 cut(s) 320, 612, 993
BslFI GGGAC 1 cut(s) 429
BslI CCNNNNNNNGG 1 cut(s) 321
BsmAI GTCTC 4 cut(s) 47, 197, 831, 1108
BsmFI GGGAC 1 cut(s) 429
BsmI GAATGC 1 cut(s) 811
BsnI GGCC 1 cut(s) 148
BsoBI CYCGRG 1 cut(s) 174
Bsp143I GATC 4 cut(s) 630, 651, 712, 1060
BspACI CCGC 2 cut(s) 50, 568
BspANI GGCC 1 cut(s) 148
BspCNI CTCAG 2 cut(s) 466, 649
BspHI TCATGA 1 cut(s) 648
BspLI GGNNCC 2 cut(s) 168, 616
BspMAI CTGCAG 1 cut(s) 901
BspQI GCTCTTC 1 cut(s) 483
BspT107I GGYRCC 1 cut(s) 166
BsrDI GCAATG 3 cut(s) 45, 309, 456
BsrFI RCCGGY 1 cut(s) 992
BsrI ACTGG 3 cut(s) 61, 1015, 1051
BssAI RCCGGY 1 cut(s) 992
BssECI CCNNGG 2 cut(s) 320, 1163
BssMI GATC 4 cut(s) 630, 651, 712, 1060
BssNAI GTATAC 1 cut(s) 972
BssNI GRCGYC 2 cut(s) 167, 349
Bst1107I GTATAC 1 cut(s) 972
Bst2UI CCWGG 2 cut(s) 428, 1140
Bst4CI ACNGT 2 cut(s) 208, 1091
Bst6I CTCTTC 3 cut(s) 123, 483, 764
BstACI GRCGYC 2 cut(s) 167, 349
BstAPI GCANNNNNTGC 1 cut(s) 893
BstC8I GCNNGC 1 cut(s) 183
BstDEI CTNAG 2 cut(s) 474, 636
BstF5I GGATG 2 cut(s) 302, 451
BstH2I RGCGCY 1 cut(s) 170
BstHHI GCGC 3 cut(s) 169, 187, 220
BstKTI GATC 4 cut(s) 633, 654, 715, 1063
BstMAI GTCTC 4 cut(s) 47, 197, 831, 1108
BstMBI GATC 4 cut(s) 630, 651, 712, 1060
BstMCI CGRYCG 1 cut(s) 997
BstMWI GCNNNNNNNGC 2 cut(s) 187, 893
BstNI CCWGG 2 cut(s) 428, 1140
BstNSI RCATGY 1 cut(s) 935
BstSCI CCNGG 3 cut(s) 319, 426, 1138
BstSFI CTRYAG 1 cut(s) 897
BstV1I GCAGC 3 cut(s) 61, 199, 883
BstV2I GAAGAC 1 cut(s) 429
BstXI CCANNNNNNTGG 2 cut(s) 434, 983
BstZ17I GTATAC 1 cut(s) 972
BsuRI GGCC 1 cut(s) 148
BtsCI GGATG 2 cut(s) 302, 451
BtsI GCAGTG 1 cut(s) 613
BtsIMutI CAGTG 5 cut(s) 374, 538, 613, 621, 1044
Cac8I GCNNGC 1 cut(s) 183
CaiI CAGNNNCTG 1 cut(s) 896
CciI TCATGA 1 cut(s) 648
CfoI GCGC 3 cut(s) 169, 187, 220
Cfr10I RCCGGY 1 cut(s) 992
Cfr13I GGNCC 1 cut(s) 146
CseI GACGC 1 cut(s) 338
CsiI ACCWGGT 1 cut(s) 426
Csp6I GTAC 3 cut(s) 704, 990, 1132
CspAI ACCGGT 1 cut(s) 992
CviAII CATG 6 cut(s) 221, 316, 649, 797, 932, 1118
CviJI RGCY 9 cut(s) 140, 148, 181, 395, 493, 682, 1019, 1124, 1138
CviKI_1 RGCY 9 cut(s) 140, 148, 181, 395, 493, 682, 1019, 1124, 1138
CviQI GTAC 3 cut(s) 704, 990, 1132
DdeI CTNAG 2 cut(s) 474, 636
DinI GGCGCC 1 cut(s) 168
DpnI GATC 4 cut(s) 632, 653, 714, 1062
DpnII GATC 4 cut(s) 630, 651, 712, 1060
DraI TTTAAA 1 cut(s) 283
DrdI GACNNNNNNGTC 1 cut(s) 993
DseDI GACNNNNNNGTC 1 cut(s) 993
Eam1104I CTCTTC 3 cut(s) 123, 483, 764
EarI CTCTTC 3 cut(s) 123, 483, 764
Eco32I GATATC 1 cut(s) 791
Eco57I CTGAAG 1 cut(s) 162
Eco88I CYCGRG 1 cut(s) 174
EcoO109I RGGNCCY 1 cut(s) 146
EcoRII CCWGG 2 cut(s) 426, 1138
EcoRV GATATC 1 cut(s) 791
EgeI GGCGCC 1 cut(s) 168
EheI GGCGCC 1 cut(s) 168
FaeI CATG 6 cut(s) 224, 319, 652, 800, 935, 1121
FaqI GGGAC 1 cut(s) 429
FatI CATG 6 cut(s) 220, 315, 648, 796, 931, 1117
FauI CCCGC 1 cut(s) 575
FbaI TGATCA 3 cut(s) 630, 651, 712
FblI GTMKAC 1 cut(s) 971
Fnu4HI GCNGC 3 cut(s) 75, 188, 897
FokI GGATG 2 cut(s) 309, 458
Fsp4HI GCNGC 3 cut(s) 75, 188, 897
FspBI CTAG 4 cut(s) 108, 494, 1109, 1174
FspI TGCGCA 2 cut(s) 186, 219
GlaI GCGC 3 cut(s) 168, 186, 219
GluI GCNGC 3 cut(s) 75, 188, 897
HaeII RGCGCY 1 cut(s) 170
HaeIII GGCC 1 cut(s) 148
HapII CCGG 3 cut(s) 320, 612, 993
HgaI GACGC 1 cut(s) 338
HhaI GCGC 3 cut(s) 169, 187, 220
Hin1I GRCGYC 2 cut(s) 167, 349
Hin1II CATG 6 cut(s) 224, 319, 652, 800, 935, 1121
Hin6I GCGC 3 cut(s) 167, 185, 218
HinP1I GCGC 3 cut(s) 167, 185, 218
HinfI GANTC 6 cut(s) 231, 364, 561, 583, 662, 839
HpaII CCGG 3 cut(s) 320, 612, 993
HphI GGTGA 3 cut(s) 556, 589, 722
Hpy166II GTNNAC 1 cut(s) 972
Hpy188I TCNGA 5 cut(s) 639, 667, 817, 922, 1083
Hpy188III TCNNGA 7 cut(s) 176, 386, 649, 1030, 1066, 1103, 1151
Hpy8I GTNNAC 1 cut(s) 972
HpyAV CCTTC 3 cut(s) 137, 465, 845
HpyCH4III ACNGT 2 cut(s) 208, 1091
HpyCH4IV ACGT 1 cut(s) 988
HpyF10VI GCNNNNNNNGC 2 cut(s) 187, 893
HpyF3I CTNAG 2 cut(s) 474, 636
HpySE526I ACGT 1 cut(s) 988
Hsp92I GRCGYC 2 cut(s) 167, 349
Hsp92II CATG 6 cut(s) 224, 319, 652, 800, 935, 1121
HspAI GCGC 3 cut(s) 167, 185, 218
KasI GGCGCC 1 cut(s) 166
Ksp22I TGATCA 3 cut(s) 630, 651, 712
Kzo9I GATC 4 cut(s) 630, 651, 712, 1060
LguI GCTCTTC 1 cut(s) 483
LmnI GCTCC 2 cut(s) 178, 556
Lsp1109I GCAGC 3 cut(s) 61, 199, 883
LweI GCATC 3 cut(s) 436, 883, 1062
MabI ACCWGGT 1 cut(s) 426
MaeI CTAG 4 cut(s) 108, 494, 1109, 1174
MaeII ACGT 1 cut(s) 988
MaeIII GTNAC 2 cut(s) 595, 1085
MalI GATC 4 cut(s) 632, 653, 714, 1062
MboI GATC 4 cut(s) 630, 651, 712, 1060
MboII GAAGA 9 cut(s) 77, 140, 434, 494, 500, 517, 781, 970, 1081
MluCI AATT 4 cut(s) 571, 936, 940, 1146
Mly113I GGCGCC 1 cut(s) 167
MlyI GAGTC 3 cut(s) 555, 671, 833
MmeI TCCRAC 1 cut(s) 645
MseI TTAA 4 cut(s) 95, 282, 858, 939
MslI CAYNNNNRTG 4 cut(s) 295, 314, 524, 1049
MspI CCGG 3 cut(s) 320, 612, 993
MspR9I CCNGG 3 cut(s) 321, 428, 1140
Mva1269I GAATGC 1 cut(s) 811
MvaI CCWGG 2 cut(s) 428, 1140
MwoI GCNNNNNNNGC 2 cut(s) 187, 893
NarI GGCGCC 1 cut(s) 167
NciI CCSGG 1 cut(s) 321
NdeII GATC 4 cut(s) 630, 651, 712, 1060
NlaIII CATG 6 cut(s) 224, 319, 652, 800, 935, 1121
NlaIV GGNNCC 2 cut(s) 168, 616
NmuCI GTSAC 1 cut(s) 595
NsbI TGCGCA 2 cut(s) 186, 219
NspI RCATGY 1 cut(s) 935
OliI CACNNNNGTG 1 cut(s) 1049
PagI TCATGA 1 cut(s) 648
PciI ACATGT 1 cut(s) 931
PciSI GCTCTTC 1 cut(s) 483
PcsI WCGNNNNNNNCGW 2 cut(s) 985, 994
PctI GAATGC 1 cut(s) 811
PfeI GAWTC 3 cut(s) 231, 364, 583
PinAI ACCGGT 1 cut(s) 992
PkrI GCNGC 3 cut(s) 76, 189, 898
PleI GAGTC 3 cut(s) 555, 670, 833
PluTI GGCGCC 1 cut(s) 170
PpsI GAGTC 3 cut(s) 555, 670, 833
PscI ACATGT 1 cut(s) 931
PshBI ATTAAT 1 cut(s) 939
Psp6I CCWGG 2 cut(s) 426, 1138
PspGI CCWGG 2 cut(s) 426, 1138
PspN4I GGNNCC 2 cut(s) 168, 616
PspPI GGNCC 1 cut(s) 146
PstI CTGCAG 1 cut(s) 901
PstNI CAGNNNCTG 1 cut(s) 896
RsaI GTAC 3 cut(s) 705, 991, 1133
RsaNI GTAC 3 cut(s) 704, 990, 1132
RseI CAYNNNNRTG 4 cut(s) 295, 314, 524, 1049
SapI GCTCTTC 1 cut(s) 483
SaqAI TTAA 4 cut(s) 95, 282, 858, 939
SatI GCNGC 3 cut(s) 75, 188, 897
Sau3AI GATC 4 cut(s) 630, 651, 712, 1060
Sau96I GGNCC 1 cut(s) 146
ScaI AGTACT 1 cut(s) 705
SchI GAGTC 3 cut(s) 555, 671, 833
ScrFI CCNGG 3 cut(s) 321, 428, 1140
SexAI ACCWGGT 1 cut(s) 426
SfaNI GCATC 3 cut(s) 436, 883, 1062
SfcI CTRYAG 1 cut(s) 897
SfoI GGCGCC 1 cut(s) 168
SmiMI CAYNNNNRTG 4 cut(s) 295, 314, 524, 1049
SmlI CTYRAG 2 cut(s) 577, 1064
SmoI CTYRAG 2 cut(s) 577, 1064
Sse9I AATT 4 cut(s) 571, 936, 940, 1146
SsiI CCGC 2 cut(s) 50, 568
SspDI GGCGCC 1 cut(s) 166
SspI AATATT 1 cut(s) 760
SspMI CTAG 4 cut(s) 108, 494, 1109, 1174
StyD4I CCNGG 3 cut(s) 319, 426, 1138
TaaI ACNGT 2 cut(s) 208, 1091
TaiI ACGT 1 cut(s) 991
TaqI TCGA 2 cut(s) 263, 458
TasI AATT 4 cut(s) 571, 936, 940, 1146
TatI WGTACW 2 cut(s) 703, 1131
TfiI GAWTC 3 cut(s) 231, 364, 583
Tru1I TTAA 4 cut(s) 95, 282, 858, 939
Tru9I TTAA 4 cut(s) 95, 282, 858, 939
TscAI CASTG 5 cut(s) 374, 538, 613, 628, 1051
TseFI GTSAC 1 cut(s) 595
TseI GCWGC 3 cut(s) 74, 187, 896
Tsp45I GTSAC 1 cut(s) 595
TspDTI ATGAA 5 cut(s) 495, 501, 714, 960, 1134
TspRI CASTG 5 cut(s) 374, 538, 613, 628, 1051
VspI ATTAAT 1 cut(s) 939
XceI RCATGY 1 cut(s) 935
XmiI GTMKAC 1 cut(s) 971
XspI CTAG 4 cut(s) 108, 494, 1109, 1174
ZrmI AGTACT 1 cut(s) 705
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.