Belongs to the DEAD box helicase family
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G28180 AT1G28180 AT2G33730 |
| fragaria_vesca | FvH4_1g07870 FvH4_2g13750 |
| malus_domestica | MD05G1025300.v1.1 MD10G1025500.v1.1 |
| prunus_persica | Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1 |
| pyrus_communis | pycom05g01650 pycom10g01680 |
| rosa_chinensis | RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441 |
| rosa_laevigata | RLG00000013755 RLG00000016434 |
| rosa_multiflora | Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003 |
| rosa_roxburghii | Rroxscaffold_3G00237200 Rroxscaffold_7G00193300 |
| rosa_rugosa | Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900 |
| rosa_samantha | Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800 |
| rosa_wichuraiana | Rw1G010290 Rw6G017840 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 1 cut(s) | 993 |
| Acc16I | TGCGCA | 2 cut(s) | 186, 219 |
| AccB1I | GGYRCC | 1 cut(s) | 166 |
| AccI | GTMKAC | 1 cut(s) | 971 |
| AciI | CCGC | 2 cut(s) | 50, 568 |
| AcuI | CTGAAG | 1 cut(s) | 162 |
| AcyI | GRCGYC | 2 cut(s) | 167, 349 |
| AfaI | GTAC | 3 cut(s) | 705, 991, 1133 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 321 |
| AflIII | ACRYGT | 1 cut(s) | 931 |
| AgeI | ACCGGT | 1 cut(s) | 992 |
| AgsI | TTSAA | 5 cut(s) | 364, 422, 469, 677, 851 |
| AjnI | CCWGG | 2 cut(s) | 426, 1138 |
| AleI | CACNNNNGTG | 1 cut(s) | 1049 |
| AluBI | AGCT | 3 cut(s) | 181, 493, 682 |
| AluI | AGCT | 3 cut(s) | 181, 493, 682 |
| Alw26I | GTCTC | 4 cut(s) | 47, 197, 831, 1108 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 896 |
| Ama87I | CYCGRG | 1 cut(s) | 174 |
| AoxI | GGCC | 1 cut(s) | 146 |
| ApeKI | GCWGC | 3 cut(s) | 74, 187, 896 |
| AseI | ATTAAT | 1 cut(s) | 939 |
| AsiGI | ACCGGT | 1 cut(s) | 992 |
| AspLEI | GCGC | 3 cut(s) | 169, 187, 220 |
| AspS9I | GGNCC | 1 cut(s) | 146 |
| AsuC2I | CCSGG | 1 cut(s) | 321 |
| AsuHPI | GGTGA | 3 cut(s) | 556, 589, 722 |
| AvaI | CYCGRG | 1 cut(s) | 174 |
| BanI | GGYRCC | 1 cut(s) | 166 |
| BbsI | GAAGAC | 1 cut(s) | 429 |
| BbvI | GCAGC | 3 cut(s) | 61, 199, 883 |
| BccI | CCATC | 1 cut(s) | 984 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 438, 472 |
| BciT130I | CCWGG | 2 cut(s) | 428, 1140 |
| BclI | TGATCA | 3 cut(s) | 630, 651, 712 |
| BcnI | CCSGG | 1 cut(s) | 321 |
| BcoDI | GTCTC | 4 cut(s) | 47, 197, 831, 1108 |
| BfaI | CTAG | 4 cut(s) | 108, 494, 1109, 1174 |
| BfmI | CTRYAG | 1 cut(s) | 897 |
| BfoI | RGCGCY | 1 cut(s) | 170 |
| BisI | GCNGC | 3 cut(s) | 75, 188, 897 |
| BlsI | GCNGC | 3 cut(s) | 76, 189, 898 |
| BmcAI | AGTACT | 1 cut(s) | 705 |
| Bme1390I | CCNGG | 3 cut(s) | 321, 428, 1140 |
| BmeT110I | CYCGRG | 1 cut(s) | 174 |
| BmgT120I | GGNCC | 1 cut(s) | 146 |
| BmiI | GGNNCC | 2 cut(s) | 168, 616 |
| BmrFI | CCNGG | 3 cut(s) | 321, 428, 1140 |
| BmrI | ACTGGG | 1 cut(s) | 1056 |
| BmsI | GCATC | 3 cut(s) | 436, 883, 1062 |
| BmuI | ACTGGG | 1 cut(s) | 1056 |
| BpiI | GAAGAC | 1 cut(s) | 429 |
| BpuEI | CTTGAG | 2 cut(s) | 598, 1049 |
| BpuMI | CCSGG | 1 cut(s) | 321 |
| BsaHI | GRCGYC | 2 cut(s) | 167, 349 |
| BsaJI | CCNNGG | 2 cut(s) | 320, 1163 |
| BsaWI | WCCGGW | 1 cut(s) | 992 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 529, 559 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 321 |
| Bse118I | RCCGGY | 1 cut(s) | 992 |
| Bse1I | ACTGG | 3 cut(s) | 61, 1015, 1051 |
| Bse3DI | GCAATG | 3 cut(s) | 45, 309, 456 |
| BseBI | CCWGG | 2 cut(s) | 428, 1140 |
| BseDI | CCNNGG | 2 cut(s) | 320, 1163 |
| BseGI | GGATG | 2 cut(s) | 302, 451 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 321 |
| BseMI | GCAATG | 3 cut(s) | 45, 309, 456 |
| BseMII | CTCAG | 2 cut(s) | 465, 650 |
| BseNI | ACTGG | 3 cut(s) | 61, 1015, 1051 |
| BseXI | GCAGC | 3 cut(s) | 61, 199, 883 |
| BsgI | GTGCAG | 1 cut(s) | 1020 |
| Bsh1285I | CGRYCG | 1 cut(s) | 997 |
| BshFI | GGCC | 1 cut(s) | 148 |
| BshNI | GGYRCC | 1 cut(s) | 166 |
| BshTI | ACCGGT | 1 cut(s) | 992 |
| BsiEI | CGRYCG | 1 cut(s) | 997 |
| BsiHKCI | CYCGRG | 1 cut(s) | 174 |
| BsiSI | CCGG | 3 cut(s) | 320, 612, 993 |
| BslFI | GGGAC | 1 cut(s) | 429 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 321 |
| BsmAI | GTCTC | 4 cut(s) | 47, 197, 831, 1108 |
| BsmFI | GGGAC | 1 cut(s) | 429 |
| BsmI | GAATGC | 1 cut(s) | 811 |
| BsnI | GGCC | 1 cut(s) | 148 |
| BsoBI | CYCGRG | 1 cut(s) | 174 |
| Bsp143I | GATC | 4 cut(s) | 630, 651, 712, 1060 |
| BspACI | CCGC | 2 cut(s) | 50, 568 |
| BspANI | GGCC | 1 cut(s) | 148 |
| BspCNI | CTCAG | 2 cut(s) | 466, 649 |
| BspHI | TCATGA | 1 cut(s) | 648 |
| BspLI | GGNNCC | 2 cut(s) | 168, 616 |
| BspMAI | CTGCAG | 1 cut(s) | 901 |
| BspQI | GCTCTTC | 1 cut(s) | 483 |
| BspT107I | GGYRCC | 1 cut(s) | 166 |
| BsrDI | GCAATG | 3 cut(s) | 45, 309, 456 |
| BsrFI | RCCGGY | 1 cut(s) | 992 |
| BsrI | ACTGG | 3 cut(s) | 61, 1015, 1051 |
| BssAI | RCCGGY | 1 cut(s) | 992 |
| BssECI | CCNNGG | 2 cut(s) | 320, 1163 |
| BssMI | GATC | 4 cut(s) | 630, 651, 712, 1060 |
| BssNAI | GTATAC | 1 cut(s) | 972 |
| BssNI | GRCGYC | 2 cut(s) | 167, 349 |
| Bst1107I | GTATAC | 1 cut(s) | 972 |
| Bst2UI | CCWGG | 2 cut(s) | 428, 1140 |
| Bst4CI | ACNGT | 2 cut(s) | 208, 1091 |
| Bst6I | CTCTTC | 3 cut(s) | 123, 483, 764 |
| BstACI | GRCGYC | 2 cut(s) | 167, 349 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 893 |
| BstC8I | GCNNGC | 1 cut(s) | 183 |
| BstDEI | CTNAG | 2 cut(s) | 474, 636 |
| BstF5I | GGATG | 2 cut(s) | 302, 451 |
| BstH2I | RGCGCY | 1 cut(s) | 170 |
| BstHHI | GCGC | 3 cut(s) | 169, 187, 220 |
| BstKTI | GATC | 4 cut(s) | 633, 654, 715, 1063 |
| BstMAI | GTCTC | 4 cut(s) | 47, 197, 831, 1108 |
| BstMBI | GATC | 4 cut(s) | 630, 651, 712, 1060 |
| BstMCI | CGRYCG | 1 cut(s) | 997 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 187, 893 |
| BstNI | CCWGG | 2 cut(s) | 428, 1140 |
| BstNSI | RCATGY | 1 cut(s) | 935 |
| BstSCI | CCNGG | 3 cut(s) | 319, 426, 1138 |
| BstSFI | CTRYAG | 1 cut(s) | 897 |
| BstV1I | GCAGC | 3 cut(s) | 61, 199, 883 |
| BstV2I | GAAGAC | 1 cut(s) | 429 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 434, 983 |
| BstZ17I | GTATAC | 1 cut(s) | 972 |
| BsuRI | GGCC | 1 cut(s) | 148 |
| BtsCI | GGATG | 2 cut(s) | 302, 451 |
| BtsI | GCAGTG | 1 cut(s) | 613 |
| BtsIMutI | CAGTG | 5 cut(s) | 374, 538, 613, 621, 1044 |
| Cac8I | GCNNGC | 1 cut(s) | 183 |
| CaiI | CAGNNNCTG | 1 cut(s) | 896 |
| CciI | TCATGA | 1 cut(s) | 648 |
| CfoI | GCGC | 3 cut(s) | 169, 187, 220 |
| Cfr10I | RCCGGY | 1 cut(s) | 992 |
| Cfr13I | GGNCC | 1 cut(s) | 146 |
| CseI | GACGC | 1 cut(s) | 338 |
| CsiI | ACCWGGT | 1 cut(s) | 426 |
| Csp6I | GTAC | 3 cut(s) | 704, 990, 1132 |
| CspAI | ACCGGT | 1 cut(s) | 992 |
| CviAII | CATG | 6 cut(s) | 221, 316, 649, 797, 932, 1118 |
| CviJI | RGCY | 9 cut(s) | 140, 148, 181, 395, 493, 682, 1019, 1124, 1138 |
| CviKI_1 | RGCY | 9 cut(s) | 140, 148, 181, 395, 493, 682, 1019, 1124, 1138 |
| CviQI | GTAC | 3 cut(s) | 704, 990, 1132 |
| DdeI | CTNAG | 2 cut(s) | 474, 636 |
| DinI | GGCGCC | 1 cut(s) | 168 |
| DpnI | GATC | 4 cut(s) | 632, 653, 714, 1062 |
| DpnII | GATC | 4 cut(s) | 630, 651, 712, 1060 |
| DraI | TTTAAA | 1 cut(s) | 283 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 993 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 993 |
| Eam1104I | CTCTTC | 3 cut(s) | 123, 483, 764 |
| EarI | CTCTTC | 3 cut(s) | 123, 483, 764 |
| Eco32I | GATATC | 1 cut(s) | 791 |
| Eco57I | CTGAAG | 1 cut(s) | 162 |
| Eco88I | CYCGRG | 1 cut(s) | 174 |
| EcoO109I | RGGNCCY | 1 cut(s) | 146 |
| EcoRII | CCWGG | 2 cut(s) | 426, 1138 |
| EcoRV | GATATC | 1 cut(s) | 791 |
| EgeI | GGCGCC | 1 cut(s) | 168 |
| EheI | GGCGCC | 1 cut(s) | 168 |
| FaeI | CATG | 6 cut(s) | 224, 319, 652, 800, 935, 1121 |
| FaqI | GGGAC | 1 cut(s) | 429 |
| FatI | CATG | 6 cut(s) | 220, 315, 648, 796, 931, 1117 |
| FauI | CCCGC | 1 cut(s) | 575 |
| FbaI | TGATCA | 3 cut(s) | 630, 651, 712 |
| FblI | GTMKAC | 1 cut(s) | 971 |
| Fnu4HI | GCNGC | 3 cut(s) | 75, 188, 897 |
| FokI | GGATG | 2 cut(s) | 309, 458 |
| Fsp4HI | GCNGC | 3 cut(s) | 75, 188, 897 |
| FspBI | CTAG | 4 cut(s) | 108, 494, 1109, 1174 |
| FspI | TGCGCA | 2 cut(s) | 186, 219 |
| GlaI | GCGC | 3 cut(s) | 168, 186, 219 |
| GluI | GCNGC | 3 cut(s) | 75, 188, 897 |
| HaeII | RGCGCY | 1 cut(s) | 170 |
| HaeIII | GGCC | 1 cut(s) | 148 |
| HapII | CCGG | 3 cut(s) | 320, 612, 993 |
| HgaI | GACGC | 1 cut(s) | 338 |
| HhaI | GCGC | 3 cut(s) | 169, 187, 220 |
| Hin1I | GRCGYC | 2 cut(s) | 167, 349 |
| Hin1II | CATG | 6 cut(s) | 224, 319, 652, 800, 935, 1121 |
| Hin6I | GCGC | 3 cut(s) | 167, 185, 218 |
| HinP1I | GCGC | 3 cut(s) | 167, 185, 218 |
| HinfI | GANTC | 6 cut(s) | 231, 364, 561, 583, 662, 839 |
| HpaII | CCGG | 3 cut(s) | 320, 612, 993 |
| HphI | GGTGA | 3 cut(s) | 556, 589, 722 |
| Hpy166II | GTNNAC | 1 cut(s) | 972 |
| Hpy188I | TCNGA | 5 cut(s) | 639, 667, 817, 922, 1083 |
| Hpy188III | TCNNGA | 7 cut(s) | 176, 386, 649, 1030, 1066, 1103, 1151 |
| Hpy8I | GTNNAC | 1 cut(s) | 972 |
| HpyAV | CCTTC | 3 cut(s) | 137, 465, 845 |
| HpyCH4III | ACNGT | 2 cut(s) | 208, 1091 |
| HpyCH4IV | ACGT | 1 cut(s) | 988 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 187, 893 |
| HpyF3I | CTNAG | 2 cut(s) | 474, 636 |
| HpySE526I | ACGT | 1 cut(s) | 988 |
| Hsp92I | GRCGYC | 2 cut(s) | 167, 349 |
| Hsp92II | CATG | 6 cut(s) | 224, 319, 652, 800, 935, 1121 |
| HspAI | GCGC | 3 cut(s) | 167, 185, 218 |
| KasI | GGCGCC | 1 cut(s) | 166 |
| Ksp22I | TGATCA | 3 cut(s) | 630, 651, 712 |
| Kzo9I | GATC | 4 cut(s) | 630, 651, 712, 1060 |
| LguI | GCTCTTC | 1 cut(s) | 483 |
| LmnI | GCTCC | 2 cut(s) | 178, 556 |
| Lsp1109I | GCAGC | 3 cut(s) | 61, 199, 883 |
| LweI | GCATC | 3 cut(s) | 436, 883, 1062 |
| MabI | ACCWGGT | 1 cut(s) | 426 |
| MaeI | CTAG | 4 cut(s) | 108, 494, 1109, 1174 |
| MaeII | ACGT | 1 cut(s) | 988 |
| MaeIII | GTNAC | 2 cut(s) | 595, 1085 |
| MalI | GATC | 4 cut(s) | 632, 653, 714, 1062 |
| MboI | GATC | 4 cut(s) | 630, 651, 712, 1060 |
| MboII | GAAGA | 9 cut(s) | 77, 140, 434, 494, 500, 517, 781, 970, 1081 |
| MluCI | AATT | 4 cut(s) | 571, 936, 940, 1146 |
| Mly113I | GGCGCC | 1 cut(s) | 167 |
| MlyI | GAGTC | 3 cut(s) | 555, 671, 833 |
| MmeI | TCCRAC | 1 cut(s) | 645 |
| MseI | TTAA | 4 cut(s) | 95, 282, 858, 939 |
| MslI | CAYNNNNRTG | 4 cut(s) | 295, 314, 524, 1049 |
| MspI | CCGG | 3 cut(s) | 320, 612, 993 |
| MspR9I | CCNGG | 3 cut(s) | 321, 428, 1140 |
| Mva1269I | GAATGC | 1 cut(s) | 811 |
| MvaI | CCWGG | 2 cut(s) | 428, 1140 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 187, 893 |
| NarI | GGCGCC | 1 cut(s) | 167 |
| NciI | CCSGG | 1 cut(s) | 321 |
| NdeII | GATC | 4 cut(s) | 630, 651, 712, 1060 |
| NlaIII | CATG | 6 cut(s) | 224, 319, 652, 800, 935, 1121 |
| NlaIV | GGNNCC | 2 cut(s) | 168, 616 |
| NmuCI | GTSAC | 1 cut(s) | 595 |
| NsbI | TGCGCA | 2 cut(s) | 186, 219 |
| NspI | RCATGY | 1 cut(s) | 935 |
| OliI | CACNNNNGTG | 1 cut(s) | 1049 |
| PagI | TCATGA | 1 cut(s) | 648 |
| PciI | ACATGT | 1 cut(s) | 931 |
| PciSI | GCTCTTC | 1 cut(s) | 483 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 985, 994 |
| PctI | GAATGC | 1 cut(s) | 811 |
| PfeI | GAWTC | 3 cut(s) | 231, 364, 583 |
| PinAI | ACCGGT | 1 cut(s) | 992 |
| PkrI | GCNGC | 3 cut(s) | 76, 189, 898 |
| PleI | GAGTC | 3 cut(s) | 555, 670, 833 |
| PluTI | GGCGCC | 1 cut(s) | 170 |
| PpsI | GAGTC | 3 cut(s) | 555, 670, 833 |
| PscI | ACATGT | 1 cut(s) | 931 |
| PshBI | ATTAAT | 1 cut(s) | 939 |
| Psp6I | CCWGG | 2 cut(s) | 426, 1138 |
| PspGI | CCWGG | 2 cut(s) | 426, 1138 |
| PspN4I | GGNNCC | 2 cut(s) | 168, 616 |
| PspPI | GGNCC | 1 cut(s) | 146 |
| PstI | CTGCAG | 1 cut(s) | 901 |
| PstNI | CAGNNNCTG | 1 cut(s) | 896 |
| RsaI | GTAC | 3 cut(s) | 705, 991, 1133 |
| RsaNI | GTAC | 3 cut(s) | 704, 990, 1132 |
| RseI | CAYNNNNRTG | 4 cut(s) | 295, 314, 524, 1049 |
| SapI | GCTCTTC | 1 cut(s) | 483 |
| SaqAI | TTAA | 4 cut(s) | 95, 282, 858, 939 |
| SatI | GCNGC | 3 cut(s) | 75, 188, 897 |
| Sau3AI | GATC | 4 cut(s) | 630, 651, 712, 1060 |
| Sau96I | GGNCC | 1 cut(s) | 146 |
| ScaI | AGTACT | 1 cut(s) | 705 |
| SchI | GAGTC | 3 cut(s) | 555, 671, 833 |
| ScrFI | CCNGG | 3 cut(s) | 321, 428, 1140 |
| SexAI | ACCWGGT | 1 cut(s) | 426 |
| SfaNI | GCATC | 3 cut(s) | 436, 883, 1062 |
| SfcI | CTRYAG | 1 cut(s) | 897 |
| SfoI | GGCGCC | 1 cut(s) | 168 |
| SmiMI | CAYNNNNRTG | 4 cut(s) | 295, 314, 524, 1049 |
| SmlI | CTYRAG | 2 cut(s) | 577, 1064 |
| SmoI | CTYRAG | 2 cut(s) | 577, 1064 |
| Sse9I | AATT | 4 cut(s) | 571, 936, 940, 1146 |
| SsiI | CCGC | 2 cut(s) | 50, 568 |
| SspDI | GGCGCC | 1 cut(s) | 166 |
| SspI | AATATT | 1 cut(s) | 760 |
| SspMI | CTAG | 4 cut(s) | 108, 494, 1109, 1174 |
| StyD4I | CCNGG | 3 cut(s) | 319, 426, 1138 |
| TaaI | ACNGT | 2 cut(s) | 208, 1091 |
| TaiI | ACGT | 1 cut(s) | 991 |
| TaqI | TCGA | 2 cut(s) | 263, 458 |
| TasI | AATT | 4 cut(s) | 571, 936, 940, 1146 |
| TatI | WGTACW | 2 cut(s) | 703, 1131 |
| TfiI | GAWTC | 3 cut(s) | 231, 364, 583 |
| Tru1I | TTAA | 4 cut(s) | 95, 282, 858, 939 |
| Tru9I | TTAA | 4 cut(s) | 95, 282, 858, 939 |
| TscAI | CASTG | 5 cut(s) | 374, 538, 613, 628, 1051 |
| TseFI | GTSAC | 1 cut(s) | 595 |
| TseI | GCWGC | 3 cut(s) | 74, 187, 896 |
| Tsp45I | GTSAC | 1 cut(s) | 595 |
| TspDTI | ATGAA | 5 cut(s) | 495, 501, 714, 960, 1134 |
| TspRI | CASTG | 5 cut(s) | 374, 538, 613, 628, 1051 |
| VspI | ATTAAT | 1 cut(s) | 939 |
| XceI | RCATGY | 1 cut(s) | 935 |
| XmiI | GTMKAC | 1 cut(s) | 971 |
| XspI | CTAG | 4 cut(s) | 108, 494, 1109, 1174 |
| ZrmI | AGTACT | 1 cut(s) | 705 |