Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Forward (+)

34763729 .. 34766673

Gene Structure 2945 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00193300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGCAATGCCTTCCAGCAATTTCAAACTTGAGAATGAGGATGAAGAGCTTGATGACAAGAAGATTTACAGAACCACTTATATATATGTTTAGTGCCACCATGCCTCCTGCGGTGGAGCGCCTTGCTCGTAAGTATTTGAGGAATCCTGTTGTGGTTACAATTGGCACAGCTGGAAAGACCACTGATTTGATCACTCAGAATGTGGTCTGGAGTAAGGATGCAGAGAAGTTTGAGAGGCTAAAGAGATTGCTTGATGAACTTGGTGATAAGACTGCTATTGTGTCTGTTAACACCAAGAAAACTGCTGATTATGTAGCCAAGAGTTTGGATAAGAATGGATATCGTGTAACCACTTTGCATGGGGGGAAATCACAAGACCAGAGAGAAATTAGTCTTGAAGGTTTCGGGACCAGGAGATACAATGTCCTTGTTGCAACAGATGTTGCTGGACGTGGTATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCTCAAGTACTGAAACACACACCATTGGACGTACTGGACGTGCAGGGAAGACTGGTGTAGCCACATCATTGTTGACAATTCACGACACTGATGTCTTCTATGATCTCAAGCAGATGCTCATTCAGAGTAACAGTCATGTTCCTCCTGAACTGGCAAAACATGAAGCCTCAAAGTTCAAGCCTGGTTCTATTCCTGATAGGCCACCTAGACATAATGACACTATCTTTACGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

244

Amino Acids

27.27

Weight (kDa)

9.63

Isoelectric Point (pI)

32.8

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	75 - 182	1.4e-28	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	590
AciI	CCGC	1 cut(s)	110
AfaI	GTAC	2 cut(s)	508, 532
AgsI	TTSAA	3 cut(s)	24, 398, 676
AjiI	CACGTC	2 cut(s)	452, 539
AjnI	CCWGG	2 cut(s)	410, 679
AluBI	AGCT	2 cut(s)	48, 170
AluI	AGCT	2 cut(s)	48, 170
AoxI	GGCC	2 cut(s)	474, 698
ArsI	GACNNNNNNTTYG	2 cut(s)	169, 201
AseI	ATTAAT	1 cut(s)	486
AspLEI	GCGC	1 cut(s)	120
AspS9I	GGNCC	2 cut(s)	408, 475
AsuHPI	GGTGA	1 cut(s)	275
AvaII	GGWCC	1 cut(s)	408
BbsI	GAAGAC	2 cut(s)	554, 586
BciT130I	CCWGG	2 cut(s)	412, 681
BclI	TGATCA	1 cut(s)	189
BfaI	CTAG	1 cut(s)	705
BfoI	RGCGCY	1 cut(s)	121
BmcAI	AGTACT	1 cut(s)	508
Bme1390I	CCNGG	2 cut(s)	412, 681
Bme18I	GGWCC	1 cut(s)	408
BmgBI	CACGTC	2 cut(s)	452, 539
BmgT120I	GGNCC	2 cut(s)	408, 475
BmiI	GGNNCC	1 cut(s)	409
BmrFI	CCNGG	2 cut(s)	412, 681
BmsI	GCATC	2 cut(s)	208, 603
BpiI	GAAGAC	2 cut(s)	554, 586
BpmI	CTGGAG	1 cut(s)	229
BpuEI	CTTGAG	3 cut(s)	49, 487, 590
BsaXI	ACNNNNNCTCC	2 cut(s)	88, 118
Bse1I	ACTGG	3 cut(s)	538, 556, 654
Bse3DI	GCAATG	1 cut(s)	11
BseBI	CCWGG	2 cut(s)	412, 681
BseGI	GGATG	2 cut(s)	45, 223
BseMI	GCAATG	1 cut(s)	11
BseMII	CTCAG	1 cut(s)	209
BseNI	ACTGG	3 cut(s)	538, 556, 654
BsgI	GTGCAG	1 cut(s)	561
BshFI	GGCC	2 cut(s)	476, 700
BslFI	GGGAC	1 cut(s)	421
BsmFI	GGGAC	1 cut(s)	421
BsnI	GGCC	2 cut(s)	476, 700
Bsp143I	GATC	2 cut(s)	189, 601
BspACI	CCGC	1 cut(s)	110
BspANI	GGCC	2 cut(s)	476, 700
BspCNI	CTCAG	1 cut(s)	208
BspLI	GGNNCC	1 cut(s)	409
BspQI	GCTCTTC	1 cut(s)	38
BsrDI	GCAATG	1 cut(s)	11
BsrI	ACTGG	3 cut(s)	538, 556, 654
BssMI	GATC	2 cut(s)	189, 601
Bst2UI	CCWGG	2 cut(s)	412, 681
Bst4CI	ACNGT	1 cut(s)	632
Bst6I	CTCTTC	1 cut(s)	38
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	2 cut(s)	45, 223
BstH2I	RGCGCY	1 cut(s)	121
BstHHI	GCGC	1 cut(s)	120
BstKTI	GATC	2 cut(s)	192, 604
BstMBI	GATC	2 cut(s)	189, 601
BstNI	CCWGG	2 cut(s)	412, 681
BstSCI	CCNGG	2 cut(s)	410, 679
BstV2I	GAAGAC	2 cut(s)	554, 586
BstXI	CCANNNNNNTGG	1 cut(s)	325
BsuRI	GGCC	2 cut(s)	476, 700
BtrI	CACGTC	2 cut(s)	452, 539
BtsCI	GGATG	2 cut(s)	45, 223
BtsIMutI	CAGTG	2 cut(s)	180, 585
CfoI	GCGC	1 cut(s)	120
Cfr13I	GGNCC	2 cut(s)	408, 475
Csp6I	GTAC	2 cut(s)	507, 531
CviAII	CATG	5 cut(s)	100, 359, 479, 635, 659
CviJI	RGCY	9 cut(s)	48, 170, 238, 317, 476, 560, 665, 679, 700
CviKI_1	RGCY	9 cut(s)	48, 170, 238, 317, 476, 560, 665, 679, 700
CviQI	GTAC	2 cut(s)	507, 531
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	2 cut(s)	191, 603
DpnII	GATC	2 cut(s)	189, 601
DrdI	GACNNNNNNGTC	1 cut(s)	590
DseDI	GACNNNNNNGTC	1 cut(s)	590
Eam1104I	CTCTTC	1 cut(s)	38
EarI	CTCTTC	1 cut(s)	38
Eco32I	GATATC	1 cut(s)	341
Eco47I	GGWCC	1 cut(s)	408
EcoRII	CCWGG	2 cut(s)	410, 679
EcoRV	GATATC	1 cut(s)	341
FaeI	CATG	5 cut(s)	103, 362, 482, 638, 662
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	5 cut(s)	99, 358, 478, 634, 658
FbaI	TGATCA	1 cut(s)	189
FokI	GGATG	2 cut(s)	52, 230
FspBI	CTAG	1 cut(s)	705
GlaI	GCGC	1 cut(s)	119
GsuI	CTGGAG	1 cut(s)	229
HaeII	RGCGCY	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	476, 700
HhaI	GCGC	1 cut(s)	120
Hin1II	CATG	5 cut(s)	103, 362, 482, 638, 662
Hin6I	GCGC	1 cut(s)	118
HinP1I	GCGC	1 cut(s)	118
HincII	GTYRAC	2 cut(s)	289, 573
HindII	GTYRAC	2 cut(s)	289, 573
HinfI	GANTC	1 cut(s)	142
HpaI	GTTAAC	1 cut(s)	289
HphI	GGTGA	1 cut(s)	275
Hpy166II	GTNNAC	2 cut(s)	289, 573
Hpy188I	TCNGA	2 cut(s)	198, 624
Hpy188III	TCNNGA	6 cut(s)	208, 395, 406, 581, 644, 692
Hpy8I	GTNNAC	2 cut(s)	289, 573
HpyAV	CCTTC	2 cut(s)	20, 392
HpyCH4III	ACNGT	1 cut(s)	632
HpyCH4IV	ACGT	3 cut(s)	451, 529, 538
HpyCH4V	TGCA	5 cut(s)	4, 221, 358, 434, 542
HpyF3I	CTNAG	1 cut(s)	195
HpySE526I	ACGT	3 cut(s)	451, 529, 538
Hsp92II	CATG	5 cut(s)	103, 362, 482, 638, 662
HspAI	GCGC	1 cut(s)	118
Ksp22I	TGATCA	1 cut(s)	189
KspAI	GTTAAC	1 cut(s)	289
Kzo9I	GATC	2 cut(s)	189, 601
LguI	GCTCTTC	1 cut(s)	38
LmnI	GCTCC	1 cut(s)	115
LweI	GCATC	2 cut(s)	208, 603
MaeI	CTAG	1 cut(s)	705
MaeII	ACGT	3 cut(s)	451, 529, 538
MaeIII	GTNAC	3 cut(s)	154, 346, 626
MalI	GATC	2 cut(s)	191, 603
MboI	GATC	2 cut(s)	189, 601
MboII	GAAGA	4 cut(s)	55, 72, 559, 586
MfeI	CAATTG	1 cut(s)	159
MluCI	AATT	6 cut(s)	18, 159, 387, 483, 487, 576
MnlI	CCTC	7 cut(s)	30, 114, 132, 228, 511, 651, 676
MseI	TTAA	2 cut(s)	288, 486
MspA1I	CMGCKG	1 cut(s)	170
MspR9I	CCNGG	2 cut(s)	412, 681
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	2 cut(s)	412, 681
NdeII	GATC	2 cut(s)	189, 601
NlaIII	CATG	5 cut(s)	103, 362, 482, 638, 662
NlaIV	GGNNCC	1 cut(s)	409
PciSI	GCTCTTC	1 cut(s)	38
PcsI	WCGNNNNNNNCGW	1 cut(s)	535
PfeI	GAWTC	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	486
Psp6I	CCWGG	2 cut(s)	410, 679
PspGI	CCWGG	2 cut(s)	410, 679
PspN4I	GGNNCC	1 cut(s)	409
PspPI	GGNCC	2 cut(s)	408, 475
PvuII	CAGCTG	1 cut(s)	170
RsaI	GTAC	2 cut(s)	508, 532
RsaNI	GTAC	2 cut(s)	507, 531
SapI	GCTCTTC	1 cut(s)	38
SaqAI	TTAA	2 cut(s)	288, 486
Sau3AI	GATC	2 cut(s)	189, 601
Sau96I	GGNCC	2 cut(s)	408, 475
ScaI	AGTACT	1 cut(s)	508
ScrFI	CCNGG	2 cut(s)	412, 681
SetI	ASST	8 cut(s)	50, 172, 403, 454, 469, 532, 541, 706
SfaNI	GCATC	2 cut(s)	208, 603
SinI	GGWCC	1 cut(s)	408
SmlI	CTYRAG	3 cut(s)	28, 502, 605
SmoI	CTYRAG	3 cut(s)	28, 502, 605
Sse9I	AATT	6 cut(s)	18, 159, 387, 483, 487, 576
SsiI	CCGC	1 cut(s)	110
SspMI	CTAG	1 cut(s)	705
StyD4I	CCNGG	2 cut(s)	410, 679
TaaI	ACNGT	1 cut(s)	632
TaiI	ACGT	3 cut(s)	454, 532, 541
TasI	AATT	6 cut(s)	18, 159, 387, 483, 487, 576
TatI	WGTACW	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	142
Tru1I	TTAA	2 cut(s)	288, 486
Tru9I	TTAA	2 cut(s)	288, 486
TscAI	CASTG	2 cut(s)	187, 592
TspDTI	ATGAA	3 cut(s)	56, 270, 675
TspRI	CASTG	2 cut(s)	187, 592
VpaK11BI	GGWCC	1 cut(s)	408
VspI	ATTAAT	1 cut(s)	486
XspI	CTAG	1 cut(s)	705
ZrmI	AGTACT	1 cut(s)	508

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.