Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Forward (+)

6938632 .. 6939333

Gene Structure 702 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46879

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGAGGGACCGGAGGATTTTCCGAGAGGACTTCAATATTTCATACAAAGGGTCTAGGATTCCTAGACCTATTAGGAATTGGGATGAGAGTAAATTGAGTAAGGAGTTGCTCGAGGCTGTGAAGAGGGCTGGTTATAAGAAGCCGTCTCCCATTCAGATGGGGGCAATCCCTCTCGGTTTGCAACAGCGTGATGTTATTGGCATTGCGGAGACTGGTTCTGGCAAGACTGCTGCCTTTGTTCTTCATATGTTAAGTTATATTTCTAGGTTGCCTCCTATTAGTGAAGAGAATGAGGCTGAAGGGCCTTATGCTGTGGTTTTGGCGCCTACTCGGGAGCTTGCGCAGCAGATTGAGAAAGAGACTGTCAAGTTTGCGCATGACTTGGGAATCAAGGTGGTTTCTATTGTTGGTGGGAAGTCGATTGAGGAACAGGGTTTTAAAATCGCACAAGGATGTGAGGTTGTCATTGCCACGCCGGGGCGTTTGATTGATTGTTTGCAGAGGCGTCTTGCTGTTTTGAATCAGTGCAACTATGTAGTTCTTGACAAGGCTGATACGATGATAGATAAGGGACTTGAAGACCAGGTTGTTGGTGTTTTGGATGCAATGCCTTCGAGCAACTTGAAACCTGAGAATGAACCACTTATATTTTCAGTGCAACTATGCCTCCTGCTGTGGAGCGACTCGCCCGCAATTACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

233

Amino Acids

25.8

Weight (kDa)

6.2

Isoelectric Point (pI)

41.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	49 - 208	3.7e-38	DEAD/DEAH box helicase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	135
Acc16I	TGCGCA	2 cut(s)	342, 375
AccB1I	GGYRCC	1 cut(s)	322
AciI	CCGC	2 cut(s)	206, 690
AcuI	CTGAAG	1 cut(s)	318
AcyI	GRCGYC	2 cut(s)	323, 505
AfiI	CCNNNNNNNGG	1 cut(s)	477
AgsI	TTSAA	4 cut(s)	34, 520, 578, 625
AjnI	CCWGG	1 cut(s)	582
AluBI	AGCT	1 cut(s)	337
AluI	AGCT	1 cut(s)	337
Alw26I	GTCTC	3 cut(s)	150, 203, 353
Ama87I	CYCGRG	2 cut(s)	110, 330
AoxI	GGCC	1 cut(s)	302
ApeKI	GCWGC	2 cut(s)	230, 343
AspLEI	GCGC	3 cut(s)	325, 343, 376
AspS9I	GGNCC	2 cut(s)	7, 302
AsuC2I	CCSGG	1 cut(s)	477
AvaI	CYCGRG	2 cut(s)	110, 330
AvaII	GGWCC	1 cut(s)	7
BanI	GGYRCC	1 cut(s)	322
BbsI	GAAGAC	1 cut(s)	585
BbvI	GCAGC	2 cut(s)	217, 355
BccI	CCATC	1 cut(s)	151
BceAI	ACGGC	1 cut(s)	127
BcgI	CGANNNNNNTGC	2 cut(s)	594, 628
BciT130I	CCWGG	1 cut(s)	584
BcnI	CCSGG	1 cut(s)	477
BcoDI	GTCTC	3 cut(s)	150, 203, 353
BfaI	CTAG	3 cut(s)	54, 63, 264
BfoI	RGCGCY	1 cut(s)	326
BisI	GCNGC	2 cut(s)	231, 344
BlsI	GCNGC	2 cut(s)	232, 345
Bme1390I	CCNGG	2 cut(s)	477, 584
Bme18I	GGWCC	1 cut(s)	7
BmeT110I	CYCGRG	2 cut(s)	110, 330
BmgT120I	GGNCC	2 cut(s)	7, 302
BmiI	GGNNCC	2 cut(s)	8, 324
BmrFI	CCNGG	2 cut(s)	477, 584
BmsI	GCATC	1 cut(s)	592
BpiI	GAAGAC	1 cut(s)	585
BpuMI	CCSGG	1 cut(s)	477
BsaHI	GRCGYC	2 cut(s)	323, 505
BsaJI	CCNNGG	1 cut(s)	476
BsaWI	WCCGGW	1 cut(s)	9
BsaXI	ACNNNNNCTCC	2 cut(s)	651, 681
Bsc4I	CCNNNNNNNGG	1 cut(s)	477
Bse1I	ACTGG	1 cut(s)	217
Bse3DI	GCAATG	3 cut(s)	201, 465, 612
BseBI	CCWGG	1 cut(s)	584
BseDI	CCNNGG	1 cut(s)	476
BseGI	GGATG	3 cut(s)	88, 458, 607
BseLI	CCNNNNNNNGG	1 cut(s)	477
BseMI	GCAATG	3 cut(s)	201, 465, 612
BseMII	CTCAG	1 cut(s)	621
BseNI	ACTGG	1 cut(s)	217
BseXI	GCAGC	2 cut(s)	217, 355
BshFI	GGCC	1 cut(s)	304
BshNI	GGYRCC	1 cut(s)	322
BsiHKCI	CYCGRG	2 cut(s)	110, 330
BsiSI	CCGG	2 cut(s)	10, 476
BslFI	GGGAC	2 cut(s)	20, 585
BslI	CCNNNNNNNGG	1 cut(s)	477
BsmAI	GTCTC	3 cut(s)	150, 203, 353
BsmBI	CGTCTC	1 cut(s)	150
BsmFI	GGGAC	2 cut(s)	20, 585
BsnI	GGCC	1 cut(s)	304
BsoBI	CYCGRG	2 cut(s)	110, 330
BspACI	CCGC	2 cut(s)	206, 690
BspANI	GGCC	1 cut(s)	304
BspCNI	CTCAG	1 cut(s)	622
BspLI	GGNNCC	2 cut(s)	8, 324
BspT107I	GGYRCC	1 cut(s)	322
BsrDI	GCAATG	3 cut(s)	201, 465, 612
BsrI	ACTGG	1 cut(s)	217
BssECI	CCNNGG	1 cut(s)	476
BssNI	GRCGYC	2 cut(s)	323, 505
Bst2UI	CCWGG	1 cut(s)	584
Bst4CI	ACNGT	1 cut(s)	364
Bst6I	CTCTTC	2 cut(s)	116, 279
BstACI	GRCGYC	2 cut(s)	323, 505
BstC8I	GCNNGC	2 cut(s)	339, 690
BstDEI	CTNAG	1 cut(s)	630
BstF5I	GGATG	3 cut(s)	88, 458, 607
BstH2I	RGCGCY	1 cut(s)	326
BstHHI	GCGC	3 cut(s)	325, 343, 376
BstMAI	GTCTC	3 cut(s)	150, 203, 353
BstMWI	GCNNNNNNNGC	1 cut(s)	343
BstNI	CCWGG	1 cut(s)	584
BstSCI	CCNGG	2 cut(s)	475, 582
BstV1I	GCAGC	2 cut(s)	217, 355
BstV2I	GAAGAC	1 cut(s)	585
BstXI	CCANNNNNNTGG	2 cut(s)	157, 590
BsuRI	GGCC	1 cut(s)	304
BtsCI	GGATG	3 cut(s)	88, 458, 607
BtsIMutI	CAGTG	2 cut(s)	530, 660
Cac8I	GCNNGC	2 cut(s)	339, 690
CfoI	GCGC	3 cut(s)	325, 343, 376
Cfr13I	GGNCC	2 cut(s)	7, 302
CseI	GACGC	1 cut(s)	494
CsiI	ACCWGGT	1 cut(s)	582
CviAII	CATG	1 cut(s)	377
CviJI	RGCY	7 cut(s)	116, 128, 142, 296, 304, 337, 551
CviKI_1	RGCY	7 cut(s)	116, 128, 142, 296, 304, 337, 551
DdeI	CTNAG	1 cut(s)	630
DinI	GGCGCC	1 cut(s)	324
DraI	TTTAAA	1 cut(s)	439
Eam1104I	CTCTTC	2 cut(s)	116, 279
EarI	CTCTTC	2 cut(s)	116, 279
Eco47I	GGWCC	1 cut(s)	7
Eco57I	CTGAAG	1 cut(s)	318
Eco88I	CYCGRG	2 cut(s)	110, 330
EcoO109I	RGGNCCY	1 cut(s)	302
EcoRII	CCWGG	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	324
EheI	GGCGCC	1 cut(s)	324
Esp3I	CGTCTC	1 cut(s)	150
FaeI	CATG	1 cut(s)	380
FaqI	GGGAC	2 cut(s)	20, 585
FatI	CATG	1 cut(s)	376
FauI	CCCGC	1 cut(s)	697
FauNDI	CATATG	1 cut(s)	246
Fnu4HI	GCNGC	2 cut(s)	231, 344
FokI	GGATG	3 cut(s)	95, 465, 614
Fsp4HI	GCNGC	2 cut(s)	231, 344
FspBI	CTAG	3 cut(s)	54, 63, 264
FspI	TGCGCA	2 cut(s)	342, 375
GlaI	GCGC	3 cut(s)	324, 342, 375
GluI	GCNGC	2 cut(s)	231, 344
HaeII	RGCGCY	1 cut(s)	326
HaeIII	GGCC	1 cut(s)	304
HapII	CCGG	2 cut(s)	10, 476
HgaI	GACGC	1 cut(s)	494
HhaI	GCGC	3 cut(s)	325, 343, 376
Hin1I	GRCGYC	2 cut(s)	323, 505
Hin1II	CATG	1 cut(s)	380
Hin6I	GCGC	3 cut(s)	323, 341, 374
HinP1I	GCGC	3 cut(s)	323, 341, 374
HinfI	GANTC	4 cut(s)	58, 387, 520, 683
HpaII	CCGG	2 cut(s)	10, 476
Hpy188I	TCNGA	2 cut(s)	23, 156
Hpy188III	TCNNGA	2 cut(s)	332, 542
HpyAV	CCTTC	2 cut(s)	293, 621
HpyCH4III	ACNGT	1 cut(s)	364
HpyCH4V	TGCA	5 cut(s)	181, 499, 528, 605, 658
HpyF10VI	GCNNNNNNNGC	1 cut(s)	343
HpyF3I	CTNAG	1 cut(s)	630
Hsp92I	GRCGYC	2 cut(s)	323, 505
Hsp92II	CATG	1 cut(s)	380
HspAI	GCGC	3 cut(s)	323, 341, 374
KasI	GGCGCC	1 cut(s)	322
LmnI	GCTCC	2 cut(s)	334, 678
Lsp1109I	GCAGC	2 cut(s)	217, 355
LweI	GCATC	1 cut(s)	592
MabI	ACCWGGT	1 cut(s)	582
MaeI	CTAG	3 cut(s)	54, 63, 264
MboII	GAAGA	4 cut(s)	133, 233, 296, 590
MluCI	AATT	3 cut(s)	76, 92, 693
Mly113I	GGCGCC	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	677
MseI	TTAA	2 cut(s)	251, 438
MslI	CAYNNNNRTG	2 cut(s)	155, 451
MspI	CCGG	2 cut(s)	10, 476
MspR9I	CCNGG	2 cut(s)	477, 584
MvaI	CCWGG	1 cut(s)	584
MwoI	GCNNNNNNNGC	1 cut(s)	343
NarI	GGCGCC	1 cut(s)	323
NciI	CCSGG	1 cut(s)	477
NdeI	CATATG	1 cut(s)	246
NlaIII	CATG	1 cut(s)	380
NlaIV	GGNNCC	2 cut(s)	8, 324
NsbI	TGCGCA	2 cut(s)	342, 375
PaeR7I	CTCGAG	1 cut(s)	110
PfeI	GAWTC	3 cut(s)	58, 387, 520
PkrI	GCNGC	2 cut(s)	232, 345
PleI	GAGTC	1 cut(s)	677
PluTI	GGCGCC	1 cut(s)	326
PpsI	GAGTC	1 cut(s)	677
PsiI	TTATAA	1 cut(s)	135
Psp6I	CCWGG	1 cut(s)	582
PspGI	CCWGG	1 cut(s)	582
PspN4I	GGNNCC	2 cut(s)	8, 324
PspPI	GGNCC	2 cut(s)	7, 302
PspXI	VCTCGAGB	1 cut(s)	110
RseI	CAYNNNNRTG	2 cut(s)	155, 451
SaqAI	TTAA	2 cut(s)	251, 438
SatI	GCNGC	2 cut(s)	231, 344
Sau96I	GGNCC	2 cut(s)	7, 302
SchI	GAGTC	1 cut(s)	677
ScrFI	CCNGG	2 cut(s)	477, 584
SetI	ASST	7 cut(s)	70, 269, 339, 396, 462, 588, 631
SexAI	ACCWGGT	1 cut(s)	582
SfaNI	GCATC	1 cut(s)	592
SfoI	GGCGCC	1 cut(s)	324
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	1 cut(s)	7
SlaI	CTCGAG	1 cut(s)	110
SmiMI	CAYNNNNRTG	2 cut(s)	155, 451
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	3 cut(s)	76, 92, 693
SsiI	CCGC	2 cut(s)	206, 690
SspDI	GGCGCC	1 cut(s)	322
SspI	AATATT	1 cut(s)	37
SspMI	CTAG	3 cut(s)	54, 63, 264
StyD4I	CCNGG	2 cut(s)	475, 582
TaaI	ACNGT	1 cut(s)	364
TaqI	TCGA	3 cut(s)	111, 419, 614
TasI	AATT	3 cut(s)	76, 92, 693
TfiI	GAWTC	3 cut(s)	58, 387, 520
Tru1I	TTAA	2 cut(s)	251, 438
Tru9I	TTAA	2 cut(s)	251, 438
TscAI	CASTG	2 cut(s)	530, 660
TseI	GCWGC	2 cut(s)	230, 343
TspDTI	ATGAA	3 cut(s)	30, 233, 651
TspRI	CASTG	2 cut(s)	530, 660
VpaK11BI	GGWCC	1 cut(s)	7
XhoI	CTCGAG	1 cut(s)	110
XspI	CTAG	3 cut(s)	54, 63, 264

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.