Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Forward (+)

24991444 .. 24994010

Gene Structure 2567 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ56188

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2139 bp

ATGAAACGCTCCGTCGATGGCGTCGCCGCCGTCTCGTCGTCGTTGCCGCCGAAGAAACCCGTCTTCTTAACGAAAGCCGAGCGCGAGAAGTTAGCCCTACAACGCCGCCAAGAAGAACACGAGGAACAGAAACGCCGCCAGCACCAGCTTCTCTCCAATCTCCGGTCCTCCGATTCCGTCCCCAACAACTCCAATTCCGACCGGGACCGCGACCGCGATAGGGACCGAGACCGAGAGTCCCGGGACCGATACTCCCGAAGCGATCGAGATCGCGACCGGGAGAGAGACCGGGAGCGTGAATTGGAGCGGCGCAACCGTGACCGTGACAACCGTGAGAGGGAGCGCGAAGAGGAGGCCAAGGCCCGAGAGCGTGCTCGATTGGACAAATTAGCGGACCGTGAGCGCGATAAGGAGCTTGAGGCCATTAAAGAGCAGTATCTGGGCTCGAAGAAGCCGAAGAAGCGTGTTATTAAGCCTAGCGAGAAGTTCCGATTCTCTTTCGATTGGGAGAATACAGAGGACACTTCGCGTGATATGAATGCTTTATACCAAAACCCTCACGAGGCGCAGCTCCTGTTTGGGCGAGGGTTTCGTGCCGGAATGGACCGCCGAGAGCAGAAGAAGCTTGCGGTGAAGCAGGAGAGGGAGCTTAGGGATGAGATTCGGAAGAAGGACGGCGTGGAGGAGAGGCCGGAGGAGGCTGCGGCGCAGAGGCTCAAGGAGGAGGCTGCGGAGCTATATGATACTTTCGACATGAGAGTGGATCGGCATTGGACTGATAAGAAGCTGGAGGAGATGACTGAGAGGGACTGGAGGATATTCCGAGAGGACTTCAATATATCCTACAAAGGGTCTAGGATTCCTCGCCCTATGAGGAGTTGGGTTGAGAGTAGATTGAGTACGGAGCTGCTCAAGGCTGTGGAGAGGGCTGGTTATAAGAAGCCTTCTCCGATTCAGATGGCTGCCATTCCTCTGGGCCTGCAACAGCGTGATGTTATCGGCATTGCGGAGACTGGTTCTGGTAAGACTGCTGCTTTTGTTCTTCCTATGTTGACATATATTTCTAGGTTGCCTCCTATTAGTGAGGAGAATGAGGCTGAAGGTCCTTATGCTGTTGTTATGGCACCTACTCGTGAGCTTGCGCAGCAGATTGAGGAAGAGACTGTGAAGTTTGCGCATTACTTGGGTATTAAAGTGGTTTCTATTGTTGGTGGGCAGTCAATTGAGGAGCAGGGTTTTAAAATTAGGCAAGGATGTGAGGTTGTTATTGCTACGCCGGGGCGGTTGATTGATTGCTTGGAGAGGCGTTATGCTGTTTTGAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGATAGGATGATTGATATGGGGTTTGAGCCGCAGGTTGTAGGTGTTTTGGATGCAATGCCTTCCAGCAATTTCAAACCTGAGAATGAGGATGAAGAGCTTGATGACAAGAAGATTTACAGAACCACTTATATGTTTAGTGCCACCATGCCTCCTGCGGTGGAGCGCCTTGCTCGGAAGTATTTGAGGAATCCTGTTGTTGTTACAATCGGCACAGCTGGAAAGACCACTGATTTGATTACTCAGAATGTGGTCTGGAGTAAGGATGCAGAGAAGTTTGAGAGGCTAAAGAGATTGCTTGATGAACTTGGTGATAAGACTGCTATTGTGTTTGTTAACACCAAGAAAACTGCTGATTATGTAGCGAAGAGTTTGGATAAGAATGGATATCGTGTGACCACTCTGCATGGGGGGAAATCACAAGACCAGAGGGAAATTAGCCTTGAAGGTTTTAGGACCAGGAGATACAATGTCCTTGTTGCAACGGACGTTGCAGGACGTGGTATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCTCAAGTATTGAAACATACACCCATCGTATTGGACGTACTGGACGTGCAGGGAAGACTGGTGTAGCCACATCATTGTTGACAATTCACGACACTGATGTCTTCTATGATCTCAAGCAGATGCTCATTCAGAGTAACAGTCATGTTCCTCCTGAACTGGCAAAACATGAAGCCTCGAAGTTCAAGCCTGGTTCTATTCCTGATAGGCCACCTAGACGTAATGACACTATCTTTACGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

712

Amino Acids

82.43

Weight (kDa)

8.85

Isoelectric Point (pI)

43.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DDX23	PF25430	165 - 246	2.9e-22	DDX23-like domain
DEAD	PF00270	316 - 506	4.8e-46	DEAD/DEAH box helicase
Helicase_C	PF00271	541 - 650	1.2e-34	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AasI	GACNNNNNNGTC	1 cut(s)	1994
Acc16I	TGCGCA	2 cut(s)	1143, 1176
Acc36I	ACCTGC	1 cut(s)	1375
AccB1I	GGYRCC	1 cut(s)	1123
AccBSI	CCGCTC	1 cut(s)	307
AccII	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
AclWI	GGATC	1 cut(s)	771
AcuI	CTGAAG	1 cut(s)	1119
AcyI	GRCGYC	1 cut(s)	21
AfaI	GTAC	2 cut(s)	901, 1936
AfiI	CCNNNNNNNGG	5 cut(s)	162, 220, 337, 562, 849
AgsI	TTSAA	6 cut(s)	835, 1321, 1426, 1796, 1910, 2080
AhdI	GACNNNNNGTC	1 cut(s)	235
AjiI	CACGTC	2 cut(s)	1850, 1943
AjnI	CCWGG	2 cut(s)	1808, 2083
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	5 cut(s)	37, 222, 279, 1004, 1154
AlwI	GGATC	1 cut(s)	771
AlwNI	CAGNNNCTG	2 cut(s)	439, 574
Ama87I	CYCGRG	2 cut(s)	240, 363
AoxI	GGCC	7 cut(s)	354, 360, 420, 689, 976, 1872, 2102
ApeKI	GCWGC	7 cut(s)	568, 701, 728, 907, 962, 1031, 1144
ArsI	GACNNNNNNTTYG	2 cut(s)	1567, 1599
AseI	ATTAAT	1 cut(s)	1884
AspLEI	GCGC	9 cut(s)	84, 312, 345, 405, 568, 709, 1144, 1177, 1518
AsuC2I	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
AsuHPI	GGTGA	2 cut(s)	643, 1673
AvaI	CYCGRG	2 cut(s)	240, 363
AvaII	GGWCC	8 cut(s)	165, 205, 223, 244, 394, 604, 1103, 1806
BanI	GGYRCC	1 cut(s)	1123
BanII	GRGCYC	1 cut(s)	446
BauI	CACGAG	3 cut(s)	119, 560, 1131
BbsI	GAAGAC	3 cut(s)	55, 1958, 1990
Bbv12I	GWGCWC	1 cut(s)	376
BbvI	GCAGC	7 cut(s)	580, 688, 715, 894, 949, 1018, 1156
BccI	CCATC	3 cut(s)	11, 952, 1929
BceAI	ACGGC	2 cut(s)	14, 691
BciT130I	CCWGG	2 cut(s)	1810, 2085
BcnI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
BcoDI	GTCTC	5 cut(s)	37, 222, 279, 1004, 1154
BfaI	CTAG	4 cut(s)	477, 855, 1065, 2109
BfoI	RGCGCY	1 cut(s)	1519
BfuAI	ACCTGC	1 cut(s)	1375
Bme1390I	CCNGG	8 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085
Bme18I	GGWCC	8 cut(s)	165, 205, 223, 244, 394, 604, 1103, 1806
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmeT110I	CYCGRG	2 cut(s)	240, 363
BmgBI	CACGTC	2 cut(s)	1850, 1943
BmiI	GGNNCC	4 cut(s)	206, 224, 245, 1125
BmrFI	CCNGG	8 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085
BmsI	GCATC	3 cut(s)	1393, 1606, 2007
BpiI	GAAGAC	3 cut(s)	55, 1958, 1990
BpmI	CTGGAG	3 cut(s)	809, 832, 1627
Bpu10I	CCTNAGC	1 cut(s)	650
BpuEI	CTTGAG	5 cut(s)	437, 701, 896, 1885, 1994
BpuMI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
BsaBI	GATNNNNATC	1 cut(s)	267
BsaHI	GRCGYC	1 cut(s)	21
BsaI	GGTCTC	2 cut(s)	222, 279
BsaJI	CCNNGG	3 cut(s)	240, 357, 1277
BsaWI	WCCGGW	1 cut(s)	162
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 1486, 1516
Bsc4I	CCNNNNNNNGG	5 cut(s)	162, 220, 337, 562, 849
Bse1I	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
Bse3DI	GCAATG	2 cut(s)	1002, 1413
Bse8I	GATNNNNATC	1 cut(s)	267
BseBI	CCWGG	2 cut(s)	1810, 2085
BseDI	CCNNGG	3 cut(s)	240, 357, 1277
BseGI	GGATG	6 cut(s)	661, 1259, 1365, 1408, 1447, 1621
BseJI	GATNNNNATC	1 cut(s)	267
BseLI	CCNNNNNNNGG	5 cut(s)	162, 220, 337, 562, 849
BseMI	GCAATG	2 cut(s)	1002, 1413
BseMII	CTCAG	3 cut(s)	792, 1422, 1607
BseNI	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
BseRI	GAGGAG	8 cut(s)	365, 698, 710, 737, 806, 889, 1100, 1241
BseXI	GCAGC	7 cut(s)	580, 688, 715, 894, 949, 1018, 1156
BsgI	GTGCAG	1 cut(s)	1965
Bsh1236I	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
Bsh1285I	CGRYCG	4 cut(s)	202, 214, 265, 277
BshFI	GGCC	7 cut(s)	356, 362, 422, 691, 978, 1874, 2104
BshNI	GGYRCC	1 cut(s)	1123
BsiEI	CGRYCG	4 cut(s)	202, 214, 265, 277
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	2 cut(s)	240, 363
BsiSI	CCGG	8 cut(s)	163, 202, 241, 277, 289, 597, 692, 1277
BslFI	GGGAC	6 cut(s)	164, 218, 223, 236, 257, 821
BslI	CCNNNNNNNGG	5 cut(s)	162, 220, 337, 562, 849
BsmAI	GTCTC	5 cut(s)	37, 222, 279, 1004, 1154
BsmBI	CGTCTC	1 cut(s)	37
BsmFI	GGGAC	6 cut(s)	164, 218, 223, 236, 257, 821
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	7 cut(s)	356, 362, 422, 691, 978, 1874, 2104
Bso31I	GGTCTC	2 cut(s)	222, 279
BsoBI	CYCGRG	2 cut(s)	240, 363
Bsp1286I	GDGCHC	2 cut(s)	376, 446
Bsp143I	GATC	4 cut(s)	262, 268, 763, 2005
Bsp68I	TCGCGA	1 cut(s)	273
BspANI	GGCC	7 cut(s)	356, 362, 422, 691, 978, 1874, 2104
BspCNI	CTCAG	3 cut(s)	793, 1423, 1606
BspFNI	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
BspLI	GGNNCC	4 cut(s)	206, 224, 245, 1125
BspMI	ACCTGC	1 cut(s)	1375
BspPI	GGATC	1 cut(s)	771
BspQI	GCTCTTC	1 cut(s)	1440
BspT107I	GGYRCC	1 cut(s)	1123
BspTNI	GGTCTC	2 cut(s)	222, 279
BsrBI	CCGCTC	1 cut(s)	307
BsrDI	GCAATG	2 cut(s)	1002, 1413
BsrI	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
BssECI	CCNNGG	3 cut(s)	240, 357, 1277
BssMI	GATC	4 cut(s)	262, 268, 763, 2005
BssNI	GRCGYC	1 cut(s)	21
BssSI	CACGAG	3 cut(s)	119, 560, 1131
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	3 cut(s)	119, 560, 1131
Bst2UI	CCWGG	2 cut(s)	1810, 2085
Bst4CI	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
Bst6I	CTCTTC	4 cut(s)	342, 1152, 1440, 1712
BstACI	GRCGYC	1 cut(s)	21
BstC8I	GCNNGC	5 cut(s)	140, 372, 627, 980, 1140
BstDEI	CTNAG	4 cut(s)	650, 801, 1431, 1593
BstF5I	GGATG	6 cut(s)	661, 1259, 1365, 1408, 1447, 1621
BstFNI	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
BstH2I	RGCGCY	1 cut(s)	1519
BstHHI	GCGC	9 cut(s)	84, 312, 345, 405, 568, 709, 1144, 1177, 1518
BstKTI	GATC	4 cut(s)	265, 271, 766, 2008
BstMAI	GTCTC	5 cut(s)	37, 222, 279, 1004, 1154
BstMBI	GATC	4 cut(s)	262, 268, 763, 2005
BstMCI	CGRYCG	4 cut(s)	202, 214, 265, 277
BstMWI	GCNNNNNNNGC	3 cut(s)	460, 622, 1144
BstNI	CCWGG	2 cut(s)	1810, 2085
BstSCI	CCNGG	8 cut(s)	201, 239, 240, 276, 288, 1276, 1808, 2083
BstUI	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
BstV1I	GCAGC	7 cut(s)	580, 688, 715, 894, 949, 1018, 1156
BstV2I	GAAGAC	3 cut(s)	55, 1958, 1990
BstXI	CCANNNNNNTGG	2 cut(s)	973, 1928
BsuRI	GGCC	7 cut(s)	356, 362, 422, 691, 978, 1874, 2104
BtrI	CACGTC	2 cut(s)	1850, 1943
BtsCI	GGATG	6 cut(s)	661, 1259, 1365, 1408, 1447, 1621
BtsIMutI	CAGTG	3 cut(s)	1331, 1578, 1989
BtuMI	TCGCGA	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	1375
Cac8I	GCNNGC	5 cut(s)	140, 372, 627, 980, 1140
CaiI	CAGNNNCTG	2 cut(s)	439, 574
CfoI	GCGC	9 cut(s)	84, 312, 345, 405, 568, 709, 1144, 1177, 1518
Cfr9I	CCCGGG	1 cut(s)	240
CpoI	CGGWCCG	1 cut(s)	394
CseI	GACGC	1 cut(s)	10
Csp6I	GTAC	2 cut(s)	900, 1935
CspI	CGGWCCG	1 cut(s)	394
CviAII	CATG	6 cut(s)	754, 1498, 1757, 1877, 2039, 2063
CviQI	GTAC	2 cut(s)	900, 1935
DdeI	CTNAG	4 cut(s)	650, 801, 1431, 1593
DpnI	GATC	4 cut(s)	264, 270, 765, 2007
DpnII	GATC	4 cut(s)	262, 268, 763, 2005
DraI	TTTAAA	1 cut(s)	1240
DrdI	GACNNNNNNGTC	1 cut(s)	1994
DriI	GACNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	1994
Eam1104I	CTCTTC	4 cut(s)	342, 1152, 1440, 1712
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	4 cut(s)	342, 1152, 1440, 1712
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	446
Eco31I	GGTCTC	2 cut(s)	222, 279
Eco32I	GATATC	1 cut(s)	1739
Eco47I	GGWCC	8 cut(s)	165, 205, 223, 244, 394, 604, 1103, 1806
Eco57I	CTGAAG	1 cut(s)	1119
Eco88I	CYCGRG	2 cut(s)	240, 363
EcoO109I	RGGNCCY	1 cut(s)	1103
EcoRII	CCWGG	2 cut(s)	1808, 2083
EcoRV	GATATC	1 cut(s)	1739
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	1 cut(s)	37
FaeI	CATG	6 cut(s)	757, 1501, 1760, 1880, 2042, 2066
FaqI	GGGAC	6 cut(s)	164, 218, 223, 236, 257, 821
FatI	CATG	6 cut(s)	753, 1497, 1756, 1876, 2038, 2062
FokI	GGATG	6 cut(s)	668, 1266, 1372, 1415, 1454, 1628
FriOI	GRGCYC	1 cut(s)	446
FspBI	CTAG	4 cut(s)	477, 855, 1065, 2109
FspI	TGCGCA	2 cut(s)	1143, 1176
GlaI	GCGC	9 cut(s)	83, 311, 344, 404, 567, 708, 1143, 1176, 1517
GsuI	CTGGAG	3 cut(s)	809, 832, 1627
HaeII	RGCGCY	1 cut(s)	1519
HaeIII	GGCC	7 cut(s)	356, 362, 422, 691, 978, 1874, 2104
HapII	CCGG	8 cut(s)	163, 202, 241, 277, 289, 597, 692, 1277
HgaI	GACGC	1 cut(s)	10
HhaI	GCGC	9 cut(s)	84, 312, 345, 405, 568, 709, 1144, 1177, 1518
Hin1I	GRCGYC	1 cut(s)	21
Hin1II	CATG	6 cut(s)	757, 1501, 1760, 1880, 2042, 2066
Hin6I	GCGC	9 cut(s)	82, 310, 343, 403, 566, 707, 1142, 1175, 1516
HinP1I	GCGC	9 cut(s)	82, 310, 343, 403, 566, 707, 1142, 1175, 1516
HincII	GTYRAC	3 cut(s)	1053, 1687, 1977
HindII	GTYRAC	3 cut(s)	1053, 1687, 1977
HindIII	AAGCTT	1 cut(s)	623
HinfI	GANTC	8 cut(s)	173, 236, 492, 661, 859, 952, 1321, 1540
HpaI	GTTAAC	1 cut(s)	1687
HpaII	CCGG	8 cut(s)	163, 202, 241, 277, 289, 597, 692, 1277
HphI	GGTGA	2 cut(s)	643, 1673
Hpy166II	GTNNAC	3 cut(s)	1053, 1687, 1977
Hpy8I	GTNNAC	3 cut(s)	1053, 1687, 1977
Hpy99I	CGWCG	4 cut(s)	17, 26, 40, 43
HpyAV	CCTTC	5 cut(s)	664, 954, 1094, 1422, 1790
HpyCH4III	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
HpyCH4IV	ACGT	5 cut(s)	1839, 1849, 1933, 1942, 2113
HpyCH4V	TGCA	8 cut(s)	982, 1329, 1406, 1619, 1756, 1832, 1844, 1946
HpyF10VI	GCNNNNNNNGC	3 cut(s)	460, 622, 1144
HpyF3I	CTNAG	4 cut(s)	650, 801, 1431, 1593
HpySE526I	ACGT	5 cut(s)	1839, 1849, 1933, 1942, 2113
Hsp92I	GRCGYC	1 cut(s)	21
Hsp92II	CATG	6 cut(s)	757, 1501, 1760, 1880, 2042, 2066
HspAI	GCGC	9 cut(s)	82, 310, 343, 403, 566, 707, 1142, 1175, 1516
KspAI	GTTAAC	1 cut(s)	1687
Kzo9I	GATC	4 cut(s)	262, 268, 763, 2005
LguI	GCTCTTC	1 cut(s)	1440
Lsp1109I	GCAGC	7 cut(s)	580, 688, 715, 894, 949, 1018, 1156
LweI	GCATC	3 cut(s)	1393, 1606, 2007
MaeI	CTAG	4 cut(s)	477, 855, 1065, 2109
MaeII	ACGT	5 cut(s)	1839, 1849, 1933, 1942, 2113
MaeIII	GTNAC	5 cut(s)	317, 323, 1552, 1744, 2030
MalI	GATC	4 cut(s)	264, 270, 765, 2007
MbiI	CCGCTC	1 cut(s)	307
MboI	GATC	4 cut(s)	262, 268, 763, 2005
MfeI	CAATTG	1 cut(s)	1221
MhlI	GDGCHC	2 cut(s)	376, 446
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	1 cut(s)	222
MseI	TTAA	7 cut(s)	68, 426, 471, 1191, 1239, 1686, 1884
MslI	CAYNNNNRTG	2 cut(s)	758, 1481
MspA1I	CMGCKG	1 cut(s)	1568
MspI	CCGG	8 cut(s)	163, 202, 241, 277, 289, 597, 692, 1277
MspR9I	CCNGG	8 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085
MunI	CAATTG	1 cut(s)	1221
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	2 cut(s)	1810, 2085
MvnI	CGCG	7 cut(s)	84, 210, 216, 273, 345, 405, 529
MwoI	GCNNNNNNNGC	3 cut(s)	460, 622, 1144
NciI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
NdeII	GATC	4 cut(s)	262, 268, 763, 2005
NlaIII	CATG	6 cut(s)	757, 1501, 1760, 1880, 2042, 2066
NlaIV	GGNNCC	4 cut(s)	206, 224, 245, 1125
NmeAIII	GCCGAG	2 cut(s)	103, 635
NmuCI	GTSAC	3 cut(s)	317, 323, 1744
NruI	TCGCGA	1 cut(s)	273
NsbI	TGCGCA	2 cut(s)	1143, 1176
PciSI	GCTCTTC	1 cut(s)	1440
PcsI	WCGNNNNNNNCGW	4 cut(s)	47, 452, 1930, 1939
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	7 cut(s)	173, 492, 661, 859, 952, 1321, 1540
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	1103
PshBI	ATTAAT	1 cut(s)	1884
PsiI	TTATAA	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	1103
Psp6I	CCWGG	2 cut(s)	1808, 2083
PspGI	CCWGG	2 cut(s)	1808, 2083
PspN4I	GGNNCC	4 cut(s)	206, 224, 245, 1125
PspPPI	RGGWCCY	1 cut(s)	1103
PstNI	CAGNNNCTG	2 cut(s)	439, 574
PvuI	CGATCG	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	1568
RruI	TCGCGA	1 cut(s)	273
RsaI	GTAC	2 cut(s)	901, 1936
RsaNI	GTAC	2 cut(s)	900, 1935
RseI	CAYNNNNRTG	2 cut(s)	758, 1481
Rsr2I	CGGWCCG	1 cut(s)	394
RsrII	CGGWCCG	1 cut(s)	394
SapI	GCTCTTC	1 cut(s)	1440
SaqAI	TTAA	7 cut(s)	68, 426, 471, 1191, 1239, 1686, 1884
Sau3AI	GATC	4 cut(s)	262, 268, 763, 2005
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	8 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085
SduI	GDGCHC	2 cut(s)	376, 446
SfaNI	GCATC	3 cut(s)	1393, 1606, 2007
SinI	GGWCC	8 cut(s)	165, 205, 223, 244, 394, 604, 1103, 1806
SmaI	CCCGGG	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	758, 1481
SmlI	CTYRAG	5 cut(s)	416, 716, 911, 1900, 2009
SmoI	CTYRAG	5 cut(s)	416, 716, 911, 1900, 2009
SspMI	CTAG	4 cut(s)	477, 855, 1065, 2109
StyD4I	CCNGG	8 cut(s)	201, 239, 240, 276, 288, 1276, 1808, 2083
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
TaiI	ACGT	5 cut(s)	1842, 1852, 1936, 1945, 2116
TaqI	TCGA	7 cut(s)	15, 265, 376, 446, 501, 750, 2072
TaqII	GACCGA	3 cut(s)	240, 246, 261
TauI	GCSGC	7 cut(s)	29, 49, 108, 138, 310, 707, 1384
TfiI	GAWTC	7 cut(s)	173, 492, 661, 859, 952, 1321, 1540
Tru1I	TTAA	7 cut(s)	68, 426, 471, 1191, 1239, 1686, 1884
Tru9I	TTAA	7 cut(s)	68, 426, 471, 1191, 1239, 1686, 1884
TscAI	CASTG	3 cut(s)	1331, 1585, 1996
TseFI	GTSAC	3 cut(s)	317, 323, 1744
TseI	GCWGC	7 cut(s)	568, 701, 728, 907, 962, 1031, 1144
Tsp45I	GTSAC	3 cut(s)	317, 323, 1744
TspDTI	ATGAA	5 cut(s)	17, 551, 1458, 1668, 2079
TspGWI	ACGGA	3 cut(s)	166, 917, 1850
TspMI	CCCGGG	1 cut(s)	240
TspRI	CASTG	3 cut(s)	1331, 1585, 1996
VpaK11BI	GGWCC	8 cut(s)	165, 205, 223, 244, 394, 604, 1103, 1806
VspI	ATTAAT	1 cut(s)	1884
XmaI	CCCGGG	1 cut(s)	240
XspI	CTAG	4 cut(s)	477, 855, 1065, 2109

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.