Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Forward (+)

6939402 .. 6939929

Gene Structure 528 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ46880

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGATCAGCAAGGAGTCGGAAAAGTTTGAAAAGCTAAAGAGATGGCTTGATGAAGTACTTGGTGATCATAAGACTGCTATTGTATTTGCAACTACCAAGAAAAATGTAAATATTCTGGCGAAGAGTTTGAGCAAGAATGGATATCATCATGTGATTACTTTGCATTCGGATTTACAACAATCACAGAGAGACTCTAACCTTGAAGGTTTTAAGACCAAGAGATATAATGTCCTCGTTGCAACAGATGCTGCAGGACGAGGTATTGATGTATCTGATGTGGCACATGTAATTATATATGAAATGCCACCGAAGATAGAAAAGTATACCCATCGTATTGGACGTACTGGTCGTGCAGGAAAGACTGGTTTAGCCACAACATTCTTGACAATGCAAGACACTGGGGTGTTCTATGATCTCAAGAAGATGCTCATTCAGAGTAACAGTCCTGTTCCTCCTGAACTAGCGAGACATGAAGCCTCAAAGTACAAGCCTGGCACAATTCCTGACAGACCACCGAGGCATAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

175

Amino Acids

19.74

Weight (kDa)

9.7

Isoelectric Point (pI)

48.24

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Helicase_C	PF00271	8 - 119	4.5e-30	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	345
AccI	GTMKAC	1 cut(s)	323
AfaI	GTAC	3 cut(s)	57, 343, 485
AflIII	ACRYGT	1 cut(s)	283
AgsI	TTSAA	2 cut(s)	29, 203
AjnI	CCWGG	1 cut(s)	490
AleI	CACNNNNGTG	1 cut(s)	401
AluBI	AGCT	1 cut(s)	34
AluI	AGCT	1 cut(s)	34
Alw26I	GTCTC	2 cut(s)	183, 460
AlwNI	CAGNNNCTG	1 cut(s)	248
ApeKI	GCWGC	1 cut(s)	248
AsuHPI	GGTGA	1 cut(s)	74
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	2 cut(s)	36, 336
BciT130I	CCWGG	1 cut(s)	492
BclI	TGATCA	2 cut(s)	3, 64
BcoDI	GTCTC	2 cut(s)	183, 460
BfaI	CTAG	2 cut(s)	461, 526
BfmI	CTRYAG	1 cut(s)	249
BisI	GCNGC	1 cut(s)	249
BlsI	GCNGC	1 cut(s)	250
BmcAI	AGTACT	1 cut(s)	57
Bme1390I	CCNGG	1 cut(s)	492
BmrFI	CCNGG	1 cut(s)	492
BmrI	ACTGGG	1 cut(s)	408
BmsI	GCATC	2 cut(s)	235, 414
BmuI	ACTGGG	1 cut(s)	408
BpuEI	CTTGAG	1 cut(s)	401
BsaJI	CCNNGG	1 cut(s)	515
Bse1I	ACTGG	3 cut(s)	349, 367, 403
BseBI	CCWGG	1 cut(s)	492
BseDI	CCNNGG	1 cut(s)	515
BseNI	ACTGG	3 cut(s)	349, 367, 403
BseXI	GCAGC	1 cut(s)	235
BsgI	GTGCAG	1 cut(s)	372
BsmAI	GTCTC	2 cut(s)	183, 460
BsmI	GAATGC	1 cut(s)	163
Bsp143I	GATC	3 cut(s)	3, 64, 412
BspMAI	CTGCAG	1 cut(s)	253
BsrI	ACTGG	3 cut(s)	349, 367, 403
BssECI	CCNNGG	1 cut(s)	515
BssMI	GATC	3 cut(s)	3, 64, 412
BssNAI	GTATAC	1 cut(s)	324
Bst1107I	GTATAC	1 cut(s)	324
Bst2UI	CCWGG	1 cut(s)	492
Bst4CI	ACNGT	1 cut(s)	443
Bst6I	CTCTTC	1 cut(s)	116
BstAPI	GCANNNNNTGC	1 cut(s)	245
BstKTI	GATC	3 cut(s)	6, 67, 415
BstMAI	GTCTC	2 cut(s)	183, 460
BstMBI	GATC	3 cut(s)	3, 64, 412
BstMWI	GCNNNNNNNGC	1 cut(s)	245
BstNI	CCWGG	1 cut(s)	492
BstNSI	RCATGY	1 cut(s)	287
BstSCI	CCNGG	1 cut(s)	490
BstSFI	CTRYAG	1 cut(s)	249
BstV1I	GCAGC	1 cut(s)	235
BstXI	CCANNNNNNTGG	1 cut(s)	335
BstZ17I	GTATAC	1 cut(s)	324
BtsIMutI	CAGTG	1 cut(s)	396
CaiI	CAGNNNCTG	1 cut(s)	248
Csp6I	GTAC	3 cut(s)	56, 342, 484
CviAII	CATG	3 cut(s)	149, 284, 470
CviJI	RGCY	5 cut(s)	34, 46, 371, 476, 490
CviKI_1	RGCY	5 cut(s)	34, 46, 371, 476, 490
CviQI	GTAC	3 cut(s)	56, 342, 484
DpnI	GATC	3 cut(s)	5, 66, 414
DpnII	GATC	3 cut(s)	3, 64, 412
DrdI	GACNNNNNNGTC	1 cut(s)	345
DseDI	GACNNNNNNGTC	1 cut(s)	345
Eam1104I	CTCTTC	1 cut(s)	116
EarI	CTCTTC	1 cut(s)	116
Eco32I	GATATC	1 cut(s)	143
EcoRII	CCWGG	1 cut(s)	490
EcoRV	GATATC	1 cut(s)	143
FaeI	CATG	3 cut(s)	152, 287, 473
FatI	CATG	3 cut(s)	148, 283, 469
FbaI	TGATCA	2 cut(s)	3, 64
FblI	GTMKAC	1 cut(s)	323
Fnu4HI	GCNGC	1 cut(s)	249
Fsp4HI	GCNGC	1 cut(s)	249
FspBI	CTAG	2 cut(s)	461, 526
GluI	GCNGC	1 cut(s)	249
Hin1II	CATG	3 cut(s)	152, 287, 473
HinfI	GANTC	2 cut(s)	14, 191
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	324
Hpy188I	TCNGA	4 cut(s)	19, 169, 274, 435
Hpy188III	TCNNGA	4 cut(s)	382, 418, 455, 503
Hpy8I	GTNNAC	1 cut(s)	324
HpyAV	CCTTC	1 cut(s)	197
HpyCH4III	ACNGT	1 cut(s)	443
HpyCH4IV	ACGT	1 cut(s)	340
HpyCH4V	TGCA	6 cut(s)	89, 163, 239, 251, 353, 391
HpyF10VI	GCNNNNNNNGC	1 cut(s)	245
HpySE526I	ACGT	1 cut(s)	340
Hsp92II	CATG	3 cut(s)	152, 287, 473
Ksp22I	TGATCA	2 cut(s)	3, 64
Kzo9I	GATC	3 cut(s)	3, 64, 412
Lsp1109I	GCAGC	1 cut(s)	235
LweI	GCATC	2 cut(s)	235, 414
MaeI	CTAG	2 cut(s)	461, 526
MaeII	ACGT	1 cut(s)	340
MaeIII	GTNAC	1 cut(s)	437
MalI	GATC	3 cut(s)	5, 66, 414
MboI	GATC	3 cut(s)	3, 64, 412
MboII	GAAGA	3 cut(s)	133, 322, 433
MluCI	AATT	2 cut(s)	288, 498
MlyI	GAGTC	2 cut(s)	23, 185
MnlI	CCTC	5 cut(s)	242, 251, 462, 487, 510
MseI	TTAA	1 cut(s)	210
MslI	CAYNNNNRTG	1 cut(s)	401
MspR9I	CCNGG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	163
MvaI	CCWGG	1 cut(s)	492
MwoI	GCNNNNNNNGC	1 cut(s)	245
NdeII	GATC	3 cut(s)	3, 64, 412
NlaIII	CATG	3 cut(s)	152, 287, 473
NspI	RCATGY	1 cut(s)	287
OliI	CACNNNNGTG	1 cut(s)	401
PciI	ACATGT	1 cut(s)	283
PcsI	WCGNNNNNNNCGW	2 cut(s)	337, 346
PctI	GAATGC	1 cut(s)	163
PkrI	GCNGC	1 cut(s)	250
PleI	GAGTC	2 cut(s)	22, 185
PpsI	GAGTC	2 cut(s)	22, 185
PscI	ACATGT	1 cut(s)	283
Psp6I	CCWGG	1 cut(s)	490
PspGI	CCWGG	1 cut(s)	490
PstI	CTGCAG	1 cut(s)	253
PstNI	CAGNNNCTG	1 cut(s)	248
RsaI	GTAC	3 cut(s)	57, 343, 485
RsaNI	GTAC	3 cut(s)	56, 342, 484
RseI	CAYNNNNRTG	1 cut(s)	401
SaqAI	TTAA	1 cut(s)	210
SatI	GCNGC	1 cut(s)	249
Sau3AI	GATC	3 cut(s)	3, 64, 412
ScaI	AGTACT	1 cut(s)	57
SchI	GAGTC	2 cut(s)	23, 185
ScrFI	CCNGG	1 cut(s)	492
SetI	ASST	5 cut(s)	36, 201, 208, 262, 343
SfaNI	GCATC	2 cut(s)	235, 414
SfcI	CTRYAG	1 cut(s)	249
SmiMI	CAYNNNNRTG	1 cut(s)	401
SmlI	CTYRAG	1 cut(s)	416
SmoI	CTYRAG	1 cut(s)	416
Sse9I	AATT	2 cut(s)	288, 498
SspI	AATATT	1 cut(s)	112
SspMI	CTAG	2 cut(s)	461, 526
StyD4I	CCNGG	1 cut(s)	490
TaaI	ACNGT	1 cut(s)	443
TaiI	ACGT	1 cut(s)	343
TasI	AATT	2 cut(s)	288, 498
TatI	WGTACW	2 cut(s)	55, 483
Tru1I	TTAA	1 cut(s)	210
Tru9I	TTAA	1 cut(s)	210
TscAI	CASTG	1 cut(s)	403
TseI	GCWGC	1 cut(s)	248
TspDTI	ATGAA	3 cut(s)	66, 312, 486
TspRI	CASTG	1 cut(s)	403
XceI	RCATGY	1 cut(s)	287
XmiI	GTMKAC	1 cut(s)	323
XspI	CTAG	2 cut(s)	461, 526
ZrmI	AGTACT	1 cut(s)	57

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.