Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0021925.1

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

5728 .. 10955

Gene Structure 5228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0021925.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2598 bp

atgaaacgctccgtcgatggcgtcgccgccgtctcgtcgtcgttgccgccgaagaaacccgtcttcttaacgaaagccgagcgcgagaagttagccctacaacgccgccaagaagaacacgaggaacagaaacgccgccagcaccagcttctctccaatctccgctcctccgattccgtccccaacaactccaattccgaccgggaccgcgaccgcgatagggaccgagaccgagagtcccgggaccgatactcccgaagcgatcgagatcgcgaccgggagagagaccgggagcgtgaattggagcggcgcaaccgtgaccgtgacaaccgtgagagggagcgcgaagaggaggccaaggcccgagagcgtgctcgattggacaaattagcggaccgtgagcgcgataaggagcttgaggccatcaaagagcagtatctgggctcgaagaagccgaagaagcgtgttattaagcctagcgagaagttccgattctctttcgattgggagaatacagaggacacttcgcgtgatatgaatgctttataccaaaaccctcacgaggcgcagctcctgtttgggcgagggtttcgtgccggaatggaccgccgagagcagaagaagcttgcggtgaagcaggagagggagcttagggatgaaattcggaagaaggacggcgtggaggagaggccggaggaggctgcggcgcagaggctcaaggaggaggctgcggagctatacgatactttcgacatgagagtggatcggcattggactgataagaagctggaggagatgactgagagggactggaggatattccgagaggacttcaatatatcctacaaagggtctaggattcctcgccctatgaggagttgggttgagagtagattgagtacggagctgctcaaggctgtggagagggctggttataagaagccttctccgattcagatggctgccattcctctgggcctgcaacagcgtgatgttatcggcattgcggagactggttctggtaagactgctgcttttgttcttcctatgttgacatatatttctaggttgcctcctattagtgaggagaatgaggctgaaggtccttatgctgttgttatggcacctactcgtgagcttgcgcagcagattgaggaagagactgtgaagtttgcgcattacttgggtattaaagtggtttctattgttggtgggcagtcaattgaagagcagggttttaaaattaggcaaggatgtgaggttgttattgctacgccggggcggttgattgattgcttggagaggcgttatgctgttttgaatcagtgcaattatgttgttcttgatgaggccgataggatgattgatatggggtttgagccgcaggttgtaggtgttttggatgcaatgccttccagcaatttcaaacctgagaatgaggatgaagagcttgatgacaagaagatttacagaaccacttatatgtttagtgccaccatgcctcctgcggtggagcgccttgctcggaagtatttgaggaatcctgttgtggttacaatcggcacagctggaaagaccactgatttgattactcagaatgtggtctggagtaaggatgcagagaagtttgagaggctaaagagattgcttgatgaacttggtgataagactgctattgtgtttgttaacaccaagaaaactgctgattatgtagcgaagagtttggataagaatggatatcgtgtgaccactctgcatggggggaaatcacaagaccagagggaaattagccttgaaggttttaggaccaggagatacaatgtccttgttgcaacggacgttgcaggacgtggtattgatatacctgatgtggcccatgtaattaattatgatatgccctcaagtattgaaacatacacccatcgtattggacgtactggacgtgcagggaagactggtgtagccacatcattgttgacaattcatgacactgatgtcttctatgatctcaagcagatgctcattcagagtaacagtcatgttcctcctgaactggcaaaacatgaagcctcgaagttcaagcctgggacggattcttcgggagaattcgaagcctactcgatggacaagtacgagaaagtagagaagattggggaaggaacttatggcgtggtttacaaggctcgtgatcgtctcaccaatgaaaccatagctttgaagaagattcggttggagcaggaagatgagggcgtcccaagcactgccattagagaaatttctctcttgaaagaaatgcagcatgccaacattgtcaggttacaggatgttgtgcatagtgagaagcgcttgtatctggtgtttgagtacctggacttggatttgaagaagtatatggattcttctcctgaatttgcaaaggatcctcgccagataaaaatcccacctctcagccctccccgcctgcgcgcttgcacctcagccttgccctacgccttgcagcctcccacagctggccagatcgacgcccagcgaacagcgaagagcaatttgctctccgcacctaacctatcatcttcctcacctctgcccattagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

865

Amino Acids

99.48

Weight (kDa)

8.53

Isoelectric Point (pI)

44.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	936
AasI	GACNNNNNNGTC	1 cut(s)	1994
Acc16I	TGCGCA	2 cut(s)	1143, 1176
Acc36I	ACCTGC	1 cut(s)	1375
AccB1I	GGYRCC	1 cut(s)	1123
AccBSI	CCGCTC	2 cut(s)	165, 307
AccII	CGCG	8 cut(s)	84, 210, 216, 273, 345, 405, 529, 2466
AclWI	GGATC	3 cut(s)	771, 2414, 2427
AcoI	YGGCCR	1 cut(s)	2512
AcsI	RAATTY	4 cut(s)	660, 2105, 2274, 2408
AcuI	CTGAAG	1 cut(s)	1119
AcyI	GRCGYC	3 cut(s)	21, 2250, 2523
AfaI	GTAC	4 cut(s)	901, 1936, 2132, 2366
AfeI	AGCGCT	1 cut(s)	2345
AfiI	CCNNNNNNNGG	6 cut(s)	220, 337, 562, 849, 2374, 2510
AhdI	GACNNNNNGTC	1 cut(s)	235
AjiI	CACGTC	2 cut(s)	1850, 1943
AjnI	CCWGG	3 cut(s)	1808, 2083, 2367
AjuI	GAANNNNNNNTTGG	2 cut(s)	2213, 2245
Alw21I	GWGCWC	1 cut(s)	376
Alw26I	GTCTC	6 cut(s)	37, 222, 279, 1004, 1154, 2198
AlwI	GGATC	3 cut(s)	771, 2414, 2427
AlwNI	CAGNNNCTG	2 cut(s)	439, 574
Ama87I	CYCGRG	2 cut(s)	240, 363
Aor51HI	AGCGCT	1 cut(s)	2345
AoxI	GGCC	8 cut(s)	354, 360, 420, 689, 976, 1350, 1872, 2512
ApeKI	GCWGC	9 cut(s)	568, 701, 728, 907, 962, 1031, 1144, 2296, 2497
ApoI	RAATTY	4 cut(s)	660, 2105, 2274, 2408
ArsI	GACNNNNNNTTYG	4 cut(s)	1567, 1599, 2080, 2112
AseI	ATTAAT	1 cut(s)	1884
AsuC2I	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
AsuHPI	GGTGA	4 cut(s)	643, 1673, 2188, 2571
AsuII	TTCGAA	1 cut(s)	2109
AvaI	CYCGRG	2 cut(s)	240, 363
AvaII	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
BalI	TGGCCA	1 cut(s)	2514
BamHI	GGATCC	1 cut(s)	2419
BanI	GGYRCC	1 cut(s)	1123
BanII	GRGCYC	1 cut(s)	446
BauI	CACGAG	4 cut(s)	119, 560, 1131, 2184
BbsI	GAAGAC	3 cut(s)	55, 1958, 1990
Bbv12I	GWGCWC	1 cut(s)	376
BbvCI	CCTCAGC	1 cut(s)	2476
BbvI	GCAGC	9 cut(s)	580, 688, 715, 894, 949, 1018, 1156, 2308, 2509
BccI	CCATC	5 cut(s)	11, 431, 952, 1929, 2116
BceAI	ACGGC	2 cut(s)	14, 691
BciT130I	CCWGG	3 cut(s)	1810, 2085, 2369
BcnI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
BcoDI	GTCTC	6 cut(s)	37, 222, 279, 1004, 1154, 2198
BfaI	CTAG	3 cut(s)	477, 855, 1065
BfoI	RGCGCY	2 cut(s)	1519, 2347
BfuAI	ACCTGC	1 cut(s)	1375
Bme1390I	CCNGG	9 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085, 2369
Bme18I	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
BmeRI	GACNNNNNGTC	1 cut(s)	235
BmeT110I	CYCGRG	2 cut(s)	240, 363
BmgBI	CACGTC	2 cut(s)	1850, 1943
BmiI	GGNNCC	5 cut(s)	206, 224, 245, 1125, 2421
BmrFI	CCNGG	9 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085, 2369
BmsI	GCATC	3 cut(s)	1393, 1606, 2007
BpiI	GAAGAC	3 cut(s)	55, 1958, 1990
BpmI	CTGGAG	3 cut(s)	809, 832, 1627
Bpu10I	CCTNAGC	2 cut(s)	650, 2476
Bpu14I	TTCGAA	1 cut(s)	2109
BpuEI	CTTGAG	5 cut(s)	437, 701, 896, 1885, 1994
BpuMI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
BsaBI	GATNNNNATC	2 cut(s)	267, 2435
BsaHI	GRCGYC	3 cut(s)	21, 2250, 2523
BsaI	GGTCTC	2 cut(s)	222, 279
BsaJI	CCNNGG	4 cut(s)	240, 357, 1277, 2084
BsaXI	ACNNNNNCTCC	4 cut(s)	236, 266, 1486, 1516
Bsc4I	CCNNNNNNNGG	6 cut(s)	220, 337, 562, 849, 2374, 2510
Bse1I	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
Bse3DI	GCAATG	2 cut(s)	1002, 1413
Bse8I	GATNNNNATC	2 cut(s)	267, 2435
BseBI	CCWGG	3 cut(s)	1810, 2085, 2369
BseDI	CCNNGG	4 cut(s)	240, 357, 1277, 2084
BseGI	GGATG	7 cut(s)	661, 1259, 1365, 1408, 1447, 1621, 2329
BseJI	GATNNNNATC	2 cut(s)	267, 2435
BseLI	CCNNNNNNNGG	6 cut(s)	220, 337, 562, 849, 2374, 2510
BseMI	GCAATG	2 cut(s)	1002, 1413
BseMII	CTCAG	5 cut(s)	792, 1422, 1607, 2461, 2490
BseNI	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
BsePI	GCGCGC	1 cut(s)	2464
BseRI	GAGGAG	8 cut(s)	157, 365, 698, 710, 737, 806, 889, 1100
BseXI	GCAGC	9 cut(s)	580, 688, 715, 894, 949, 1018, 1156, 2308, 2509
BseYI	CCCAGC	1 cut(s)	2526
BsgI	GTGCAG	1 cut(s)	1965
Bsh1236I	CGCG	8 cut(s)	84, 210, 216, 273, 345, 405, 529, 2466
Bsh1285I	CGRYCG	4 cut(s)	202, 214, 265, 277
BshFI	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2514
BshNI	GGYRCC	1 cut(s)	1123
BsiEI	CGRYCG	4 cut(s)	202, 214, 265, 277
BsiHKAI	GWGCWC	1 cut(s)	376
BsiHKCI	CYCGRG	2 cut(s)	240, 363
BsiSI	CCGG	7 cut(s)	202, 241, 277, 289, 597, 692, 1277
BslFI	GGGAC	8 cut(s)	164, 218, 223, 236, 257, 821, 2101, 2237
BslI	CCNNNNNNNGG	6 cut(s)	220, 337, 562, 849, 2374, 2510
BsmAI	GTCTC	6 cut(s)	37, 222, 279, 1004, 1154, 2198
BsmBI	CGTCTC	2 cut(s)	37, 2198
BsmFI	GGGAC	8 cut(s)	164, 218, 223, 236, 257, 821, 2101, 2237
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2514
Bso31I	GGTCTC	2 cut(s)	222, 279
BsoBI	CYCGRG	2 cut(s)	240, 363
Bsp119I	TTCGAA	1 cut(s)	2109
Bsp1286I	GDGCHC	2 cut(s)	376, 446
Bsp143I	GATC	7 cut(s)	262, 268, 763, 2005, 2188, 2419, 2517
Bsp68I	TCGCGA	1 cut(s)	273
BspANI	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2514
BspCNI	CTCAG	5 cut(s)	793, 1423, 1606, 2460, 2489
BspFNI	CGCG	8 cut(s)	84, 210, 216, 273, 345, 405, 529, 2466
BspHI	TCATGA	1 cut(s)	1984
BspLI	GGNNCC	5 cut(s)	206, 224, 245, 1125, 2421
BspMI	ACCTGC	1 cut(s)	1375
BspPI	GGATC	3 cut(s)	771, 2414, 2427
BspQI	GCTCTTC	3 cut(s)	1221, 1440, 2534
BspT104I	TTCGAA	1 cut(s)	2109
BspT107I	GGYRCC	1 cut(s)	1123
BspTNI	GGTCTC	2 cut(s)	222, 279
BsrBI	CCGCTC	2 cut(s)	165, 307
BsrDI	GCAATG	2 cut(s)	1002, 1413
BsrI	ACTGG	5 cut(s)	815, 1018, 1942, 1960, 2058
BssECI	CCNNGG	4 cut(s)	240, 357, 1277, 2084
BssHII	GCGCGC	1 cut(s)	2464
BssMI	GATC	7 cut(s)	262, 268, 763, 2005, 2188, 2419, 2517
BssNI	GRCGYC	3 cut(s)	21, 2250, 2523
BssSI	CACGAG	4 cut(s)	119, 560, 1131, 2184
BssT1I	CCWWGG	1 cut(s)	357
Bst2BI	CACGAG	4 cut(s)	119, 560, 1131, 2184
Bst2UI	CCWGG	3 cut(s)	1810, 2085, 2369
Bst4CI	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
Bst6I	CTCTTC	6 cut(s)	342, 1152, 1221, 1440, 1712, 2534
BstACI	GRCGYC	3 cut(s)	21, 2250, 2523
BstBI	TTCGAA	1 cut(s)	2109
BstDEI	CTNAG	6 cut(s)	650, 801, 1431, 1593, 2447, 2476
BstF5I	GGATG	7 cut(s)	661, 1259, 1365, 1408, 1447, 1621, 2329
BstFNI	CGCG	8 cut(s)	84, 210, 216, 273, 345, 405, 529, 2466
BstH2I	RGCGCY	2 cut(s)	1519, 2347
BstKTI	GATC	7 cut(s)	265, 271, 766, 2008, 2191, 2422, 2520
BstMAI	GTCTC	6 cut(s)	37, 222, 279, 1004, 1154, 2198
BstMBI	GATC	7 cut(s)	262, 268, 763, 2005, 2188, 2419, 2517
BstMCI	CGRYCG	4 cut(s)	202, 214, 265, 277
BstMWI	GCNNNNNNNGC	5 cut(s)	460, 622, 1144, 2256, 2457
BstNI	CCWGG	3 cut(s)	1810, 2085, 2369
BstNSI	RCATGY	1 cut(s)	2303
BstSCI	CCNGG	9 cut(s)	201, 239, 240, 276, 288, 1276, 1808, 2083, 2367
BstUI	CGCG	8 cut(s)	84, 210, 216, 273, 345, 405, 529, 2466
BstV1I	GCAGC	9 cut(s)	580, 688, 715, 894, 949, 1018, 1156, 2308, 2509
BstV2I	GAAGAC	3 cut(s)	55, 1958, 1990
BstX2I	RGATCY	1 cut(s)	2419
BstXI	CCANNNNNNTGG	2 cut(s)	973, 1928
BstYI	RGATCY	1 cut(s)	2419
BsuRI	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2514
BtrI	CACGTC	2 cut(s)	1850, 1943
BtsCI	GGATG	7 cut(s)	661, 1259, 1365, 1408, 1447, 1621, 2329
BtsI	GCAGTG	1 cut(s)	2259
BtsIMutI	CAGTG	4 cut(s)	1331, 1578, 1989, 2259
BtuMI	TCGCGA	1 cut(s)	273
BveI	ACCTGC	1 cut(s)	1375
CaiI	CAGNNNCTG	2 cut(s)	439, 574
CciI	TCATGA	1 cut(s)	1984
Cfr9I	CCCGGG	1 cut(s)	240
CpoI	CGGWCCG	1 cut(s)	394
CseI	GACGC	3 cut(s)	10, 2239, 2531
Csp6I	GTAC	4 cut(s)	900, 1935, 2131, 2365
CspI	CGGWCCG	1 cut(s)	394
CviAII	CATG	8 cut(s)	754, 1498, 1757, 1877, 1985, 2039, 2063, 2300
CviQI	GTAC	4 cut(s)	900, 1935, 2131, 2365
DdeI	CTNAG	6 cut(s)	650, 801, 1431, 1593, 2447, 2476
DpnI	GATC	7 cut(s)	264, 270, 765, 2007, 2190, 2421, 2519
DpnII	GATC	7 cut(s)	262, 268, 763, 2005, 2188, 2419, 2517
DraI	TTTAAA	1 cut(s)	1240
DrdI	GACNNNNNNGTC	1 cut(s)	1994
DriI	GACNNNNNGTC	1 cut(s)	235
DseDI	GACNNNNNNGTC	1 cut(s)	1994
EaeI	YGGCCR	1 cut(s)	2512
Eam1104I	CTCTTC	6 cut(s)	342, 1152, 1221, 1440, 1712, 2534
Eam1105I	GACNNNNNGTC	1 cut(s)	235
EarI	CTCTTC	6 cut(s)	342, 1152, 1221, 1440, 1712, 2534
Eco130I	CCWWGG	1 cut(s)	357
Eco24I	GRGCYC	1 cut(s)	446
Eco31I	GGTCTC	2 cut(s)	222, 279
Eco32I	GATATC	1 cut(s)	1739
Eco47I	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
Eco47III	AGCGCT	1 cut(s)	2345
Eco57I	CTGAAG	1 cut(s)	1119
Eco88I	CYCGRG	2 cut(s)	240, 363
EcoO109I	RGGNCCY	1 cut(s)	1103
EcoRI	GAATTC	1 cut(s)	2105
EcoRII	CCWGG	3 cut(s)	1808, 2083, 2367
EcoRV	GATATC	1 cut(s)	1739
EcoT14I	CCWWGG	1 cut(s)	357
EcoT38I	GRGCYC	1 cut(s)	446
ErhI	CCWWGG	1 cut(s)	357
Esp3I	CGTCTC	2 cut(s)	37, 2198
FaeI	CATG	8 cut(s)	757, 1501, 1760, 1880, 1988, 2042, 2066, 2303
FaqI	GGGAC	8 cut(s)	164, 218, 223, 236, 257, 821, 2101, 2237
FatI	CATG	8 cut(s)	753, 1497, 1756, 1876, 1984, 2038, 2062, 2299
FauI	CCCGC	1 cut(s)	2465
FokI	GGATG	7 cut(s)	668, 1266, 1372, 1415, 1454, 1628, 2336
FriOI	GRGCYC	1 cut(s)	446
FspBI	CTAG	3 cut(s)	477, 855, 1065
FspI	TGCGCA	2 cut(s)	1143, 1176
GsaI	CCCAGC	1 cut(s)	2530
GsuI	CTGGAG	3 cut(s)	809, 832, 1627
HaeII	RGCGCY	2 cut(s)	1519, 2347
HaeIII	GGCC	8 cut(s)	356, 362, 422, 691, 978, 1352, 1874, 2514
HapII	CCGG	7 cut(s)	202, 241, 277, 289, 597, 692, 1277
HgaI	GACGC	3 cut(s)	10, 2239, 2531
Hin1I	GRCGYC	3 cut(s)	21, 2250, 2523
Hin1II	CATG	8 cut(s)	757, 1501, 1760, 1880, 1988, 2042, 2066, 2303
HincII	GTYRAC	3 cut(s)	1053, 1687, 1977
HindII	GTYRAC	3 cut(s)	1053, 1687, 1977
HindIII	AAGCTT	1 cut(s)	623
HpaI	GTTAAC	1 cut(s)	1687
HpaII	CCGG	7 cut(s)	202, 241, 277, 289, 597, 692, 1277
HphI	GGTGA	4 cut(s)	643, 1673, 2188, 2571
Hpy166II	GTNNAC	4 cut(s)	1053, 1687, 1977, 2176
Hpy8I	GTNNAC	4 cut(s)	1053, 1687, 1977, 2176
Hpy99I	CGWCG	5 cut(s)	17, 26, 40, 43, 2525
HpyAV	CCTTC	6 cut(s)	664, 954, 1094, 1422, 1790, 2150
HpyCH4III	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
HpyCH4IV	ACGT	4 cut(s)	1839, 1849, 1933, 1942
HpyF10VI	GCNNNNNNNGC	5 cut(s)	460, 622, 1144, 2256, 2457
HpyF3I	CTNAG	6 cut(s)	650, 801, 1431, 1593, 2447, 2476
HpySE526I	ACGT	4 cut(s)	1839, 1849, 1933, 1942
Hsp92I	GRCGYC	3 cut(s)	21, 2250, 2523
Hsp92II	CATG	8 cut(s)	757, 1501, 1760, 1880, 1988, 2042, 2066, 2303
KspAI	GTTAAC	1 cut(s)	1687
Kzo9I	GATC	7 cut(s)	262, 268, 763, 2005, 2188, 2419, 2517
LguI	GCTCTTC	3 cut(s)	1221, 1440, 2534
Lsp1109I	GCAGC	9 cut(s)	580, 688, 715, 894, 949, 1018, 1156, 2308, 2509
LweI	GCATC	3 cut(s)	1393, 1606, 2007
MaeI	CTAG	3 cut(s)	477, 855, 1065
MaeII	ACGT	4 cut(s)	1839, 1849, 1933, 1942
MaeIII	GTNAC	6 cut(s)	317, 323, 1552, 1744, 2030, 2316
MalI	GATC	7 cut(s)	264, 270, 765, 2007, 2190, 2421, 2519
MbiI	CCGCTC	2 cut(s)	165, 307
MboI	GATC	7 cut(s)	262, 268, 763, 2005, 2188, 2419, 2517
MfeI	CAATTG	1 cut(s)	1221
MflI	RGATCY	1 cut(s)	2419
MhlI	GDGCHC	2 cut(s)	376, 446
MlsI	TGGCCA	1 cut(s)	2514
MluNI	TGGCCA	1 cut(s)	2514
MlyI	GAGTC	1 cut(s)	245
MmeI	TCCRAC	2 cut(s)	222, 2211
Mox20I	TGGCCA	1 cut(s)	2514
MscI	TGGCCA	1 cut(s)	2514
MseI	TTAA	7 cut(s)	68, 471, 1191, 1239, 1686, 1884, 2596
MslI	CAYNNNNRTG	2 cut(s)	758, 1481
Msp20I	TGGCCA	1 cut(s)	2514
MspA1I	CMGCKG	2 cut(s)	1568, 2510
MspI	CCGG	7 cut(s)	202, 241, 277, 289, 597, 692, 1277
MspR9I	CCNGG	9 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085, 2369
MunI	CAATTG	1 cut(s)	1221
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	3 cut(s)	1810, 2085, 2369
MvnI	CGCG	8 cut(s)	84, 210, 216, 273, 345, 405, 529, 2466
MwoI	GCNNNNNNNGC	5 cut(s)	460, 622, 1144, 2256, 2457
NciI	CCSGG	6 cut(s)	203, 241, 242, 278, 290, 1278
NdeII	GATC	7 cut(s)	262, 268, 763, 2005, 2188, 2419, 2517
NlaIII	CATG	8 cut(s)	757, 1501, 1760, 1880, 1988, 2042, 2066, 2303
NlaIV	GGNNCC	5 cut(s)	206, 224, 245, 1125, 2421
NmeAIII	GCCGAG	2 cut(s)	103, 635
NmuCI	GTSAC	3 cut(s)	317, 323, 1744
NruI	TCGCGA	1 cut(s)	273
NsbI	TGCGCA	2 cut(s)	1143, 1176
NspI	RCATGY	1 cut(s)	2303
NspV	TTCGAA	1 cut(s)	2109
PaeI	GCATGC	1 cut(s)	2303
PagI	TCATGA	1 cut(s)	1984
PauI	GCGCGC	1 cut(s)	2464
PciSI	GCTCTTC	3 cut(s)	1221, 1440, 2534
PcsI	WCGNNNNNNNCGW	5 cut(s)	47, 452, 747, 1930, 1939
PctI	GAATGC	1 cut(s)	544
PfeI	GAWTC	9 cut(s)	173, 492, 859, 952, 1321, 1540, 2093, 2224, 2396
Ple19I	CGATCG	1 cut(s)	265
PleI	GAGTC	1 cut(s)	244
PpsI	GAGTC	1 cut(s)	244
PpuMI	RGGWCCY	1 cut(s)	1103
PshBI	ATTAAT	1 cut(s)	1884
PsiI	TTATAA	1 cut(s)	936
Psp5II	RGGWCCY	1 cut(s)	1103
Psp6I	CCWGG	3 cut(s)	1808, 2083, 2367
PspFI	CCCAGC	1 cut(s)	2526
PspGI	CCWGG	3 cut(s)	1808, 2083, 2367
PspN4I	GGNNCC	5 cut(s)	206, 224, 245, 1125, 2421
PspPPI	RGGWCCY	1 cut(s)	1103
PstNI	CAGNNNCTG	2 cut(s)	439, 574
PsuI	RGATCY	1 cut(s)	2419
PteI	GCGCGC	1 cut(s)	2464
PvuI	CGATCG	1 cut(s)	265
PvuII	CAGCTG	2 cut(s)	1568, 2510
RruI	TCGCGA	1 cut(s)	273
RsaI	GTAC	4 cut(s)	901, 1936, 2132, 2366
RsaNI	GTAC	4 cut(s)	900, 1935, 2131, 2365
RseI	CAYNNNNRTG	2 cut(s)	758, 1481
Rsr2I	CGGWCCG	1 cut(s)	394
RsrII	CGGWCCG	1 cut(s)	394
SapI	GCTCTTC	3 cut(s)	1221, 1440, 2534
SaqAI	TTAA	7 cut(s)	68, 471, 1191, 1239, 1686, 1884, 2596
Sau3AI	GATC	7 cut(s)	262, 268, 763, 2005, 2188, 2419, 2517
SchI	GAGTC	1 cut(s)	245
ScrFI	CCNGG	9 cut(s)	203, 241, 242, 278, 290, 1278, 1810, 2085, 2369
SduI	GDGCHC	2 cut(s)	376, 446
SfaNI	GCATC	3 cut(s)	1393, 1606, 2007
SfuI	TTCGAA	1 cut(s)	2109
SinI	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
SmaI	CCCGGG	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	758, 1481
SmlI	CTYRAG	5 cut(s)	416, 716, 911, 1900, 2009
SmoI	CTYRAG	5 cut(s)	416, 716, 911, 1900, 2009
SphI	GCATGC	1 cut(s)	2303
SspMI	CTAG	3 cut(s)	477, 855, 1065
StyD4I	CCNGG	9 cut(s)	201, 239, 240, 276, 288, 1276, 1808, 2083, 2367
StyI	CCWWGG	1 cut(s)	357
TaaI	ACNGT	6 cut(s)	317, 323, 332, 398, 1165, 2036
TaiI	ACGT	4 cut(s)	1842, 1852, 1936, 1945
TaqII	GACCGA	3 cut(s)	240, 246, 261
TauI	GCSGC	7 cut(s)	29, 49, 108, 138, 310, 707, 1384
TfiI	GAWTC	9 cut(s)	173, 492, 859, 952, 1321, 1540, 2093, 2224, 2396
Tru1I	TTAA	7 cut(s)	68, 471, 1191, 1239, 1686, 1884, 2596
Tru9I	TTAA	7 cut(s)	68, 471, 1191, 1239, 1686, 1884, 2596
TscAI	CASTG	4 cut(s)	1331, 1585, 1996, 2266
TseFI	GTSAC	3 cut(s)	317, 323, 1744
TseI	GCWGC	9 cut(s)	568, 701, 728, 907, 962, 1031, 1144, 2296, 2497
Tsp45I	GTSAC	3 cut(s)	317, 323, 1744
TspDTI	ATGAA	8 cut(s)	17, 551, 672, 1458, 1668, 1973, 2079, 2217
TspGWI	ACGGA	4 cut(s)	166, 917, 1850, 2105
TspMI	CCCGGG	1 cut(s)	240
TspRI	CASTG	4 cut(s)	1331, 1585, 1996, 2266
VpaK11BI	GGWCC	7 cut(s)	205, 223, 244, 394, 604, 1103, 1806
VspI	ATTAAT	1 cut(s)	1884
XapI	RAATTY	4 cut(s)	660, 2105, 2274, 2408
XceI	RCATGY	1 cut(s)	2303
XmaI	CCCGGG	1 cut(s)	240
XspI	CTAG	3 cut(s)	477, 855, 1065

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.