Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004143.1

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

105575 .. 107365

Gene Structure 1791 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004143.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atgcttcctaccgggaccgggatggcgaccgcgatagggaccgatactcccgaagcgatcgagatcgcgactgagagagagagagagaccgggagcgtgaattggagcggcgcaaccaagccgaagaatcttaaacctagcgagaagttccgattctctttcgattgggagaatacagaggacacttcgcgtgatatgaatgctctgtaccaaaaccctcatgaggcacagctcttgtttgggagaggggtcaaggctgtggagagggctggttataagaagccttctcccattcagatggctgccattcctctgggcctgcaccagcgtcatgttatcggcattgcggagactggttctggtaagactgctgcctttgttcttcctgtgttgacatatatttctaggttgcctcctattagtgaagagaatgaggctgaagggccatttgctgttgttatggcacctactcgtgagcttgcgcagcagattgagcaagagaccctgaagtttgtgcattacttgggtattaaagtggtttctattgttggtgggcagtcaattgaggaacagggttttaagattaggcaaggatgtgaggttgttattgccacaccggggcggttgattgattgtttggagaggcgttatgctgttttgaatcggtgcaattatgttgttcttgatgaggctgataggatgattgatatggggtttgagccgcaggttgtaagtgttttggatgcaatgccttccagcaatttcaaacctgagaatgaggatgaagagcttgctgacaagaagatttacagaaccacttatatgtttagtgccaccatgcctcctgcggtggagcgacttgctcgtaataaggatgcagagaagtttgagaggctaaagagattgcttgacgaacttggtgataagactgctattgtgtttgttaacaccaagaaaactgctaattatgtagccaagagtttggataagaatggatatcgtgtgaccactttgcatggggggaaatcacaagaccagagagaaattagccttgaaggttttaggaccatgagatacaatgtccttgttgcaacggatgttgcaggacgtggtattgatatacctgatgtggcccatgtaattaattatgatatgccctcaagtattgaaacatacacccatcgtattggacgtactggacgtgcagggaagactggtgtagccacatcattgttgacaattcacgacactgatgtcttctatgatctcaagcagatgctcattcagagcaacagtcatgttcctcctgaactggcaaaacatgaagccttgaagttcaagcctggttctattcctgataggccacctagacgtaatgacactatctttatgcattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

465

Amino Acids

51.9

Weight (kDa)

6.45

Isoelectric Point (pI)

36.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	276
AasI	GACNNNNNNGTC	1 cut(s)	1253
Acc16I	TGCGCA	1 cut(s)	483
Acc36I	ACCTGC	1 cut(s)	715
AccB1I	GGYRCC	1 cut(s)	463
AccBSI	CCGCTC	1 cut(s)	108
AccII	CGCG	3 cut(s)	32, 68, 190
AciI	CCGC	6 cut(s)	30, 108, 347, 622, 722, 848
AcuI	CTGAAG	2 cut(s)	459, 527
AfaI	GTAC	2 cut(s)	209, 1195
AfiI	CCNNNNNNNGG	4 cut(s)	18, 36, 223, 618
AgsI	TTSAA	6 cut(s)	661, 766, 1055, 1169, 1333, 1339
AjiI	CACGTC	2 cut(s)	1109, 1202
AjnI	CCWGG	1 cut(s)	1342
AluBI	AGCT	3 cut(s)	232, 478, 790
AluI	AGCT	3 cut(s)	232, 478, 790
Alw26I	GTCTC	3 cut(s)	80, 344, 494
AoxI	GGCC	4 cut(s)	316, 443, 1131, 1361
ApeKI	GCWGC	3 cut(s)	302, 371, 484
AseI	ATTAAT	1 cut(s)	1143
AspLEI	GCGC	2 cut(s)	113, 484
AspS9I	GGNCC	6 cut(s)	15, 39, 316, 443, 1065, 1132
AsuC2I	CCSGG	4 cut(s)	13, 19, 91, 618
AsuHPI	GGTGA	1 cut(s)	932
AvaII	GGWCC	3 cut(s)	15, 39, 1065
BanI	GGYRCC	1 cut(s)	463
BauI	CACGAG	1 cut(s)	471
BbsI	GAAGAC	2 cut(s)	1217, 1249
BbvI	GCAGC	3 cut(s)	289, 358, 496
BccI	CCATC	3 cut(s)	16, 292, 1188
BciT130I	CCWGG	1 cut(s)	1344
BcnI	CCSGG	4 cut(s)	13, 19, 91, 618
BcoDI	GTCTC	3 cut(s)	80, 344, 494
BfaI	CTAG	3 cut(s)	138, 405, 1368
BfuAI	ACCTGC	1 cut(s)	715
BisI	GCNGC	5 cut(s)	109, 303, 372, 485, 722
BlsI	GCNGC	5 cut(s)	110, 304, 373, 486, 723
Bme1390I	CCNGG	5 cut(s)	13, 19, 91, 618, 1344
Bme18I	GGWCC	3 cut(s)	15, 39, 1065
BmgBI	CACGTC	2 cut(s)	1109, 1202
BmgT120I	GGNCC	6 cut(s)	15, 39, 316, 443, 1065, 1132
BmiI	GGNNCC	3 cut(s)	16, 40, 465
BmrFI	CCNGG	5 cut(s)	13, 19, 91, 618, 1344
BmsI	GCATC	3 cut(s)	733, 865, 1266
BpiI	GAAGAC	2 cut(s)	1217, 1249
BpuEI	CTTGAG	2 cut(s)	1144, 1253
BpuMI	CCSGG	4 cut(s)	13, 19, 91, 618
BsaBI	GATNNNNATC	1 cut(s)	62
BsaI	GGTCTC	2 cut(s)	80, 494
BsaJI	CCNNGG	1 cut(s)	617
BsaXI	ACNNNNNCTCC	4 cut(s)	31, 61, 826, 856
Bsc4I	CCNNNNNNNGG	4 cut(s)	18, 36, 223, 618
Bse1I	ACTGG	4 cut(s)	358, 1201, 1219, 1317
Bse3DI	GCAATG	2 cut(s)	342, 753
Bse8I	GATNNNNATC	1 cut(s)	62
BseBI	CCWGG	1 cut(s)	1344
BseDI	CCNNGG	1 cut(s)	617
BseGI	GGATG	7 cut(s)	27, 599, 705, 748, 787, 880, 1102
BseJI	GATNNNNATC	1 cut(s)	62
BseLI	CCNNNNNNNGG	4 cut(s)	18, 36, 223, 618
BseMI	GCAATG	2 cut(s)	342, 753
BseMII	CTCAG	2 cut(s)	63, 762
BseNI	ACTGG	4 cut(s)	358, 1201, 1219, 1317
BseXI	GCAGC	3 cut(s)	289, 358, 496
BsgI	GTGCAG	2 cut(s)	305, 1224
Bsh1236I	CGCG	3 cut(s)	32, 68, 190
Bsh1285I	CGRYCG	2 cut(s)	30, 60
BshFI	GGCC	4 cut(s)	318, 445, 1133, 1363
BshNI	GGYRCC	1 cut(s)	463
BsiEI	CGRYCG	2 cut(s)	30, 60
BsiSI	CCGG	4 cut(s)	12, 18, 90, 617
BslFI	GGGAC	2 cut(s)	28, 52
BslI	CCNNNNNNNGG	4 cut(s)	18, 36, 223, 618
BsmAI	GTCTC	3 cut(s)	80, 344, 494
BsmFI	GGGAC	2 cut(s)	28, 52
BsmI	GAATGC	1 cut(s)	205
BsnI	GGCC	4 cut(s)	318, 445, 1133, 1363
Bso31I	GGTCTC	2 cut(s)	80, 494
Bsp143I	GATC	3 cut(s)	57, 63, 1264
Bsp68I	TCGCGA	1 cut(s)	68
BspACI	CCGC	6 cut(s)	30, 108, 347, 622, 722, 848
BspANI	GGCC	4 cut(s)	318, 445, 1133, 1363
BspCNI	CTCAG	2 cut(s)	64, 763
BspFNI	CGCG	3 cut(s)	32, 68, 190
BspHI	TCATGA	1 cut(s)	220
BspLI	GGNNCC	3 cut(s)	16, 40, 465
BspMI	ACCTGC	1 cut(s)	715
BspQI	GCTCTTC	1 cut(s)	780
BspT107I	GGYRCC	1 cut(s)	463
BspTNI	GGTCTC	2 cut(s)	80, 494
BsrBI	CCGCTC	1 cut(s)	108
BsrDI	GCAATG	2 cut(s)	342, 753
BsrI	ACTGG	4 cut(s)	358, 1201, 1219, 1317
BssECI	CCNNGG	1 cut(s)	617
BssMI	GATC	3 cut(s)	57, 63, 1264
BssSI	CACGAG	1 cut(s)	471
Bst2BI	CACGAG	1 cut(s)	471
Bst2UI	CCWGG	1 cut(s)	1344
Bst4CI	ACNGT	1 cut(s)	1295
Bst6I	CTCTTC	2 cut(s)	420, 780
BstC8I	GCNNGC	3 cut(s)	320, 480, 792
BstDEI	CTNAG	2 cut(s)	72, 771
BstF5I	GGATG	7 cut(s)	27, 599, 705, 748, 787, 880, 1102
BstFNI	CGCG	3 cut(s)	32, 68, 190
BstHHI	GCGC	2 cut(s)	113, 484
BstKTI	GATC	3 cut(s)	60, 66, 1267
BstMAI	GTCTC	3 cut(s)	80, 344, 494
BstMBI	GATC	3 cut(s)	57, 63, 1264
BstMCI	CGRYCG	2 cut(s)	30, 60
BstMWI	GCNNNNNNNGC	2 cut(s)	484, 493
BstNI	CCWGG	1 cut(s)	1344
BstSCI	CCNGG	5 cut(s)	11, 17, 89, 616, 1342
BstUI	CGCG	3 cut(s)	32, 68, 190
BstV1I	GCAGC	3 cut(s)	289, 358, 496
BstV2I	GAAGAC	2 cut(s)	1217, 1249
BstXI	CCANNNNNNTGG	4 cut(s)	298, 313, 982, 1187
BsuRI	GGCC	4 cut(s)	318, 445, 1133, 1363
BtrI	CACGTC	2 cut(s)	1109, 1202
BtsCI	GGATG	7 cut(s)	27, 599, 705, 748, 787, 880, 1102
BtsIMutI	CAGTG	1 cut(s)	1248
BtuMI	TCGCGA	1 cut(s)	68
BveI	ACCTGC	1 cut(s)	715
Cac8I	GCNNGC	3 cut(s)	320, 480, 792
CciI	TCATGA	1 cut(s)	220
CfoI	GCGC	2 cut(s)	113, 484
Cfr13I	GGNCC	6 cut(s)	15, 39, 316, 443, 1065, 1132
CseI	GACGC	1 cut(s)	317
Csp6I	GTAC	2 cut(s)	208, 1194
CviAII	CATG	8 cut(s)	221, 332, 838, 1016, 1069, 1136, 1298, 1322
CviQI	GTAC	2 cut(s)	208, 1194
DdeI	CTNAG	2 cut(s)	72, 771
DpnI	GATC	3 cut(s)	59, 65, 1266
DpnII	GATC	3 cut(s)	57, 63, 1264
DrdI	GACNNNNNNGTC	1 cut(s)	1253
DseDI	GACNNNNNNGTC	1 cut(s)	1253
Eam1104I	CTCTTC	2 cut(s)	420, 780
EarI	CTCTTC	2 cut(s)	420, 780
Eco31I	GGTCTC	2 cut(s)	80, 494
Eco32I	GATATC	1 cut(s)	998
Eco47I	GGWCC	3 cut(s)	15, 39, 1065
Eco57I	CTGAAG	2 cut(s)	459, 527
EcoRII	CCWGG	1 cut(s)	1342
EcoRV	GATATC	1 cut(s)	998
EcoT22I	ATGCAT	1 cut(s)	1395
FaeI	CATG	8 cut(s)	224, 335, 841, 1019, 1072, 1139, 1301, 1325
FaqI	GGGAC	2 cut(s)	28, 52
FatI	CATG	8 cut(s)	220, 331, 837, 1015, 1068, 1135, 1297, 1321
Fnu4HI	GCNGC	5 cut(s)	109, 303, 372, 485, 722
FokI	GGATG	7 cut(s)	34, 606, 712, 755, 794, 887, 1109
Fsp4HI	GCNGC	5 cut(s)	109, 303, 372, 485, 722
FspBI	CTAG	3 cut(s)	138, 405, 1368
FspI	TGCGCA	1 cut(s)	483
GlaI	GCGC	2 cut(s)	112, 483
GluI	GCNGC	5 cut(s)	109, 303, 372, 485, 722
HaeIII	GGCC	4 cut(s)	318, 445, 1133, 1363
HapII	CCGG	4 cut(s)	12, 18, 90, 617
HgaI	GACGC	1 cut(s)	317
HhaI	GCGC	2 cut(s)	113, 484
Hin1II	CATG	8 cut(s)	224, 335, 841, 1019, 1072, 1139, 1301, 1325
Hin6I	GCGC	2 cut(s)	111, 482
HinP1I	GCGC	2 cut(s)	111, 482
HincII	GTYRAC	3 cut(s)	393, 946, 1236
HindII	GTYRAC	3 cut(s)	393, 946, 1236
HinfI	GANTC	3 cut(s)	127, 153, 661
HpaI	GTTAAC	1 cut(s)	946
HpaII	CCGG	4 cut(s)	12, 18, 90, 617
HphI	GGTGA	1 cut(s)	932
Hpy166II	GTNNAC	3 cut(s)	393, 946, 1236
Hpy188I	TCNGA	3 cut(s)	152, 297, 1287
Hpy188III	TCNNGA	9 cut(s)	50, 61, 67, 221, 473, 683, 1244, 1307, 1355
Hpy8I	GTNNAC	3 cut(s)	393, 946, 1236
HpyAV	CCTTC	4 cut(s)	294, 434, 762, 1049
HpyCH4III	ACNGT	1 cut(s)	1295
HpyCH4IV	ACGT	4 cut(s)	1108, 1192, 1201, 1372
HpyF10VI	GCNNNNNNNGC	2 cut(s)	484, 493
HpyF3I	CTNAG	2 cut(s)	72, 771
HpySE526I	ACGT	4 cut(s)	1108, 1192, 1201, 1372
Hsp92II	CATG	8 cut(s)	224, 335, 841, 1019, 1072, 1139, 1301, 1325
HspAI	GCGC	2 cut(s)	111, 482
KspAI	GTTAAC	1 cut(s)	946
Kzo9I	GATC	3 cut(s)	57, 63, 1264
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	3 cut(s)	93, 105, 853
Lsp1109I	GCAGC	3 cut(s)	289, 358, 496
LweI	GCATC	3 cut(s)	733, 865, 1266
MaeI	CTAG	3 cut(s)	138, 405, 1368
MaeII	ACGT	4 cut(s)	1108, 1192, 1201, 1372
MaeIII	GTNAC	1 cut(s)	1003
MalI	GATC	3 cut(s)	59, 65, 1266
MbiI	CCGCTC	1 cut(s)	108
MboI	GATC	3 cut(s)	57, 63, 1264
MboII	GAAGA	7 cut(s)	136, 374, 437, 797, 814, 1222, 1249
MfeI	CAATTG	1 cut(s)	561
MluCI	AATT	9 cut(s)	100, 561, 670, 760, 964, 1044, 1140, 1144, 1239
Mph1103I	ATGCAT	1 cut(s)	1395
MseI	TTAA	5 cut(s)	132, 531, 579, 945, 1143
MslI	CAYNNNNRTG	2 cut(s)	296, 821
MspI	CCGG	4 cut(s)	12, 18, 90, 617
MspR9I	CCNGG	5 cut(s)	13, 19, 91, 618, 1344
MunI	CAATTG	1 cut(s)	561
Mva1269I	GAATGC	1 cut(s)	205
MvaI	CCWGG	1 cut(s)	1344
MvnI	CGCG	3 cut(s)	32, 68, 190
MwoI	GCNNNNNNNGC	2 cut(s)	484, 493
NciI	CCSGG	4 cut(s)	13, 19, 91, 618
NdeII	GATC	3 cut(s)	57, 63, 1264
NlaIII	CATG	8 cut(s)	224, 335, 841, 1019, 1072, 1139, 1301, 1325
NlaIV	GGNNCC	3 cut(s)	16, 40, 465
NmuCI	GTSAC	1 cut(s)	1003
NruI	TCGCGA	1 cut(s)	68
NsbI	TGCGCA	1 cut(s)	483
NsiI	ATGCAT	1 cut(s)	1395
PagI	TCATGA	1 cut(s)	220
PciSI	GCTCTTC	1 cut(s)	780
PcsI	WCGNNNNNNNCGW	2 cut(s)	1189, 1198
PctI	GAATGC	1 cut(s)	205
PfeI	GAWTC	3 cut(s)	127, 153, 661
PkrI	GCNGC	5 cut(s)	110, 304, 373, 486, 723
Ple19I	CGATCG	1 cut(s)	60
PshBI	ATTAAT	1 cut(s)	1143
PsiI	TTATAA	1 cut(s)	276
Psp6I	CCWGG	1 cut(s)	1342
PspGI	CCWGG	1 cut(s)	1342
PspN4I	GGNNCC	3 cut(s)	16, 40, 465
PspPI	GGNCC	6 cut(s)	15, 39, 316, 443, 1065, 1132
PvuI	CGATCG	1 cut(s)	60
RruI	TCGCGA	1 cut(s)	68
RsaI	GTAC	2 cut(s)	209, 1195
RsaNI	GTAC	2 cut(s)	208, 1194
RseI	CAYNNNNRTG	2 cut(s)	296, 821
SapI	GCTCTTC	1 cut(s)	780
SaqAI	TTAA	5 cut(s)	132, 531, 579, 945, 1143
SatI	GCNGC	5 cut(s)	109, 303, 372, 485, 722
Sau3AI	GATC	3 cut(s)	57, 63, 1264
Sau96I	GGNCC	6 cut(s)	15, 39, 316, 443, 1065, 1132
ScrFI	CCNGG	5 cut(s)	13, 19, 91, 618, 1344
SfaNI	GCATC	3 cut(s)	733, 865, 1266
SinI	GGWCC	3 cut(s)	15, 39, 1065
SmiMI	CAYNNNNRTG	2 cut(s)	296, 821
SmlI	CTYRAG	2 cut(s)	1159, 1268
SmoI	CTYRAG	2 cut(s)	1159, 1268
Sse9I	AATT	9 cut(s)	100, 561, 670, 760, 964, 1044, 1140, 1144, 1239
SsiI	CCGC	6 cut(s)	30, 108, 347, 622, 722, 848
SspMI	CTAG	3 cut(s)	138, 405, 1368
StyD4I	CCNGG	5 cut(s)	11, 17, 89, 616, 1342
TaaI	ACNGT	1 cut(s)	1295
TaiI	ACGT	4 cut(s)	1111, 1195, 1204, 1375
TaqI	TCGA	2 cut(s)	60, 162
TaqII	GACCGA	1 cut(s)	56
TasI	AATT	9 cut(s)	100, 561, 670, 760, 964, 1044, 1140, 1144, 1239
TauI	GCSGC	2 cut(s)	111, 724
TfiI	GAWTC	3 cut(s)	127, 153, 661
Tru1I	TTAA	5 cut(s)	132, 531, 579, 945, 1143
Tru9I	TTAA	5 cut(s)	132, 531, 579, 945, 1143
TscAI	CASTG	1 cut(s)	1255
TseFI	GTSAC	1 cut(s)	1003
TseI	GCWGC	3 cut(s)	302, 371, 484
Tsp45I	GTSAC	1 cut(s)	1003
TspDTI	ATGAA	3 cut(s)	212, 798, 1338
TspGWI	ACGGA	1 cut(s)	1109
TspRI	CASTG	1 cut(s)	1255
VpaK11BI	GGWCC	3 cut(s)	15, 39, 1065
VspI	ATTAAT	1 cut(s)	1143
XspI	CTAG	3 cut(s)	138, 405, 1368
Zsp2I	ATGCAT	1 cut(s)	1395

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.