Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0002950

Physical Location & Seq

Genomic Coordinates Reverse (-)

37232986 .. 37234155

Gene Structure 1170 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24712

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGGCCATTCCTCTGGGCCTGCAACAGCGTGATGTTATCGGCATTGCGGAGACAGGTTCTGGTAAGACTGCTGCCTTTGTTCTTCCTATGTTGACATATATTTCTAGGTTGCCTCCTATTAGTGAAGAGAATGAGGCTGAAGGGCCATTTGCTGTTGTTATGGCACCTACTCGTGAGCTTGCGCAGCAGAGTGAGGAAGAGACCTCAATTGAAGAACAGGGTTTTAAGATTAGGCAAGGATGTGAGGTTGTTATTGCTACGCCGGGGCGGTTGATTGATTGTTTGGAGAGGCGTTATGCTGTTTTGAATCAGTGCAATTATGTTGTTCTTGATGAGGCTGATAGGATGATTGAGCCGCAGGTTGTAGGTGTTTTGGATGCAATGCCTTCCAACAATTTCAAACCTGAGAATGAGGATGAAGAGCTTGATGACAAGAAGATTTACAGAACCACTTATATGTTTAGTGCCACCATGCCTCCTGCGGTGGAGCGACTTGCTCGTAAGTATTTGAGGAATCCTGTTATGGATGCAGAGAAGTTTGAGAGGCTAAAGAGATTGCTTGACGAACTTGGTGATAAGACTGCTATTGTGTTTGTTAACACCAAGAAAACTGCTAATTATGTAGCCAAGAGTTTGGATAAGAATGGATATCGTGTGACCACTTTGCATGGGGGGAAATCACAAGACCAGAGAGAAATTAGCCTTGAAGGTTTTAGGACCAGGAGATACAATGTCCTTGTTGCAACGGATGTTGCAGGACGTGGTATTGATATACCTGATGTGGCCCATGTAATTAATTATGATATGCCCTCAAGTATTGAAACATACACCCATCGTATTGGACGTACTGGACGTGCAGGGAACACTGGTGTAGCCACATCATTGTTGACAATTCACGACACTGATGTCTTCTATGATCTCAAGCAGATGCTCATTCAGAGTAACAGTCATGTTCCTCCTGAACTGGCAAAACATGAAGCCTTGAAGTTCAAGCCTGGTTCTATTCCTGATAGGCCACCTAGACGTAATGACACTATCTTTATGCATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000375 GO:0003674 GO:0003724 GO:0003824 GO:0004004 GO:0004386 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005682 GO:0005730 GO:0005737 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008026 GO:0008150 GO:0008152 GO:0008186 GO:0008380 GO:0009987 GO:0010467 GO:0010501 GO:0016070 GO:0016462 GO:0016787 GO:0016817 GO:0016818 GO:0016887 GO:0017111 GO:0030532 GO:0031974 GO:0031981 GO:0032991 GO:0034641 GO:0042623 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0044237 GO:0044238 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0046483 GO:0070013 GO:0070035 GO:0071013 GO:0071704 GO:0090304 GO:0097525 GO:0120114 GO:0140098 GO:1901360 GO:1902494 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

DEAD Helicase_C

Protein Analysis

350

Amino Acids

39.28

Weight (kDa)

5.77

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DEAD	PF00270	2 - 165	5.1e-28	DEAD/DEAH box helicase
Helicase_C	PF00271	179 - 288	8.8e-35	Helicase conserved C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G28180 AT1G28180 AT2G33730
fragaria_vesca	FvH4_1g07870 FvH4_2g13750
malus_domestica	MD05G1025300.v1.1 MD10G1025500.v1.1
prunus_persica	Prupe.8G029000_v2.0.a1 Prupe.8G029000_v2.0.a1
pyrus_communis	pycom05g01650 pycom10g01680
rosa_chinensis	RchiOBHm_Chr1g0333041 RchiOBHm_Chr2g0093751 RchiOBHm_Chr2g0093761 RchiOBHm_Chr6g0275441
rosa_laevigata	RLG00000013755 RLG00000016434
rosa_multiflora	Rmu_sc0004143.1_g000018 Rmu_sc0021925.1_g000003
rosa_roxburghii	Rroxscaffold_3G00237200 Rroxscaffold_7G00193300
rosa_rugosa	Rorug02G0039500 Rorug06G0092300 Rorug06G0092400 Rorug07G0206900
rosa_samantha	Rh1AG129900 Rh1CG123700 Rh1DG135400 Rh2BG086300 Rh2CG088700 Rh2DG084300 Rh2DG084400 Rh6AG205700 Rh6CG210900 Rh6DG201100 Rh7BG338800
rosa_wichuraiana	Rw1G010290 Rw6G017840

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	908
Acc16I	TGCGCA	1 cut(s)	186
Acc36I	ACCTGC	1 cut(s)	352
AccB1I	GGYRCC	1 cut(s)	166
AciI	CCGC	5 cut(s)	5, 50, 271, 359, 485
AcoI	YGGCCR	1 cut(s)	6
AcuI	CTGAAG	1 cut(s)	162
AfaI	GTAC	1 cut(s)	850
AgsI	TTSAA	7 cut(s)	215, 310, 403, 710, 824, 988, 994
AjiI	CACGTC	2 cut(s)	764, 857
AjnI	CCWGG	2 cut(s)	722, 997
AluBI	AGCT	2 cut(s)	181, 427
AluI	AGCT	2 cut(s)	181, 427
Alw26I	GTCTC	2 cut(s)	47, 197
AlwNI	CAGNNNCTG	1 cut(s)	62
AoxI	GGCC	5 cut(s)	6, 19, 146, 786, 1016
ApeKI	GCWGC	2 cut(s)	74, 187
AseI	ATTAAT	1 cut(s)	798
AspLEI	GCGC	1 cut(s)	187
AspS9I	GGNCC	4 cut(s)	19, 146, 720, 787
AsuC2I	CCSGG	1 cut(s)	267
AsuHPI	GGTGA	1 cut(s)	587
AvaII	GGWCC	1 cut(s)	720
BanI	GGYRCC	1 cut(s)	166
BauI	CACGAG	1 cut(s)	174
BbsI	GAAGAC	1 cut(s)	904
BbvI	GCAGC	2 cut(s)	61, 199
BccI	CCATC	1 cut(s)	843
BciT130I	CCWGG	2 cut(s)	724, 999
BcnI	CCSGG	1 cut(s)	267
BcoDI	GTCTC	2 cut(s)	47, 197
BfaI	CTAG	2 cut(s)	108, 1023
BfuAI	ACCTGC	1 cut(s)	352
BisI	GCNGC	4 cut(s)	6, 75, 188, 359
BlsI	GCNGC	4 cut(s)	7, 76, 189, 360
Bme1390I	CCNGG	3 cut(s)	267, 724, 999
Bme18I	GGWCC	1 cut(s)	720
BmgBI	CACGTC	2 cut(s)	764, 857
BmgT120I	GGNCC	4 cut(s)	19, 146, 720, 787
BmiI	GGNNCC	1 cut(s)	168
BmrFI	CCNGG	3 cut(s)	267, 724, 999
BmsI	GCATC	3 cut(s)	370, 520, 921
BpiI	GAAGAC	1 cut(s)	904
BpuEI	CTTGAG	2 cut(s)	799, 908
BpuMI	CCSGG	1 cut(s)	267
BsaI	GGTCTC	1 cut(s)	197
BsaJI	CCNNGG	1 cut(s)	266
BsaXI	ACNNNNNCTCC	2 cut(s)	463, 493
Bse1I	ACTGG	3 cut(s)	856, 874, 972
Bse3DI	GCAATG	2 cut(s)	45, 390
BseBI	CCWGG	2 cut(s)	724, 999
BseDI	CCNNGG	1 cut(s)	266
BseGI	GGATG	6 cut(s)	248, 354, 385, 424, 535, 757
BseMI	GCAATG	2 cut(s)	45, 390
BseMII	CTCAG	1 cut(s)	399
BseNI	ACTGG	3 cut(s)	856, 874, 972
BseXI	GCAGC	2 cut(s)	61, 199
BsgI	GTGCAG	1 cut(s)	879
BshFI	GGCC	5 cut(s)	8, 21, 148, 788, 1018
BshNI	GGYRCC	1 cut(s)	166
BsiSI	CCGG	1 cut(s)	266
BsmAI	GTCTC	2 cut(s)	47, 197
BsnI	GGCC	5 cut(s)	8, 21, 148, 788, 1018
Bso31I	GGTCTC	1 cut(s)	197
Bsp143I	GATC	1 cut(s)	919
BspACI	CCGC	5 cut(s)	5, 50, 271, 359, 485
BspANI	GGCC	5 cut(s)	8, 21, 148, 788, 1018
BspCNI	CTCAG	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	168
BspMI	ACCTGC	1 cut(s)	352
BspQI	GCTCTTC	1 cut(s)	417
BspT107I	GGYRCC	1 cut(s)	166
BspTNI	GGTCTC	1 cut(s)	197
BsrDI	GCAATG	2 cut(s)	45, 390
BsrI	ACTGG	3 cut(s)	856, 874, 972
BssECI	CCNNGG	1 cut(s)	266
BssMI	GATC	1 cut(s)	919
BssSI	CACGAG	1 cut(s)	174
Bst2BI	CACGAG	1 cut(s)	174
Bst2UI	CCWGG	2 cut(s)	724, 999
Bst4CI	ACNGT	1 cut(s)	950
Bst6I	CTCTTC	3 cut(s)	123, 195, 417
BstC8I	GCNNGC	2 cut(s)	23, 183
BstDEI	CTNAG	1 cut(s)	408
BstF5I	GGATG	6 cut(s)	248, 354, 385, 424, 535, 757
BstHHI	GCGC	1 cut(s)	187
BstKTI	GATC	1 cut(s)	922
BstMAI	GTCTC	2 cut(s)	47, 197
BstMBI	GATC	1 cut(s)	919
BstMWI	GCNNNNNNNGC	1 cut(s)	187
BstNI	CCWGG	2 cut(s)	724, 999
BstSCI	CCNGG	3 cut(s)	265, 722, 997
BstV1I	GCAGC	2 cut(s)	61, 199
BstV2I	GAAGAC	1 cut(s)	904
BstXI	CCANNNNNNTGG	3 cut(s)	16, 637, 842
BsuRI	GGCC	5 cut(s)	8, 21, 148, 788, 1018
BtrI	CACGTC	2 cut(s)	764, 857
BtsCI	GGATG	6 cut(s)	248, 354, 385, 424, 535, 757
BtsIMutI	CAGTG	3 cut(s)	320, 867, 903
BveI	ACCTGC	1 cut(s)	352
Cac8I	GCNNGC	2 cut(s)	23, 183
CaiI	CAGNNNCTG	1 cut(s)	62
CfoI	GCGC	1 cut(s)	187
Cfr13I	GGNCC	4 cut(s)	19, 146, 720, 787
Csp6I	GTAC	1 cut(s)	849
CviAII	CATG	5 cut(s)	475, 671, 791, 953, 977
CviQI	GTAC	1 cut(s)	849
DdeI	CTNAG	1 cut(s)	408
DpnI	GATC	1 cut(s)	921
DpnII	GATC	1 cut(s)	919
DrdI	GACNNNNNNGTC	1 cut(s)	908
DseDI	GACNNNNNNGTC	1 cut(s)	908
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	3 cut(s)	123, 195, 417
EarI	CTCTTC	3 cut(s)	123, 195, 417
Eco31I	GGTCTC	1 cut(s)	197
Eco32I	GATATC	1 cut(s)	653
Eco47I	GGWCC	1 cut(s)	720
Eco57I	CTGAAG	1 cut(s)	162
EcoRII	CCWGG	2 cut(s)	722, 997
EcoRV	GATATC	1 cut(s)	653
EcoT22I	ATGCAT	1 cut(s)	1050
FaeI	CATG	5 cut(s)	478, 674, 794, 956, 980
FatI	CATG	5 cut(s)	474, 670, 790, 952, 976
Fnu4HI	GCNGC	4 cut(s)	6, 75, 188, 359
FokI	GGATG	6 cut(s)	255, 361, 392, 431, 542, 764
Fsp4HI	GCNGC	4 cut(s)	6, 75, 188, 359
FspBI	CTAG	2 cut(s)	108, 1023
FspI	TGCGCA	1 cut(s)	186
GlaI	GCGC	1 cut(s)	186
GluI	GCNGC	4 cut(s)	6, 75, 188, 359
HaeIII	GGCC	5 cut(s)	8, 21, 148, 788, 1018
HapII	CCGG	1 cut(s)	266
HhaI	GCGC	1 cut(s)	187
Hin1II	CATG	5 cut(s)	478, 674, 794, 956, 980
Hin6I	GCGC	1 cut(s)	185
HinP1I	GCGC	1 cut(s)	185
HincII	GTYRAC	3 cut(s)	96, 601, 891
HindII	GTYRAC	3 cut(s)	96, 601, 891
HinfI	GANTC	2 cut(s)	310, 517
HpaI	GTTAAC	1 cut(s)	601
HpaII	CCGG	1 cut(s)	266
HphI	GGTGA	1 cut(s)	587
Hpy166II	GTNNAC	3 cut(s)	96, 601, 891
Hpy188I	TCNGA	1 cut(s)	942
Hpy188III	TCNNGA	5 cut(s)	176, 332, 899, 962, 1010
Hpy8I	GTNNAC	3 cut(s)	96, 601, 891
HpyAV	CCTTC	3 cut(s)	137, 399, 704
HpyCH4III	ACNGT	1 cut(s)	950
HpyCH4IV	ACGT	4 cut(s)	763, 847, 856, 1027
HpyCH4V	TGCA	9 cut(s)	25, 318, 383, 533, 670, 746, 758, 860, 1048
HpyF10VI	GCNNNNNNNGC	1 cut(s)	187
HpyF3I	CTNAG	1 cut(s)	408
HpySE526I	ACGT	4 cut(s)	763, 847, 856, 1027
Hsp92II	CATG	5 cut(s)	478, 674, 794, 956, 980
HspAI	GCGC	1 cut(s)	185
KspAI	GTTAAC	1 cut(s)	601
Kzo9I	GATC	1 cut(s)	919
LguI	GCTCTTC	1 cut(s)	417
LmnI	GCTCC	1 cut(s)	490
Lsp1109I	GCAGC	2 cut(s)	61, 199
LweI	GCATC	3 cut(s)	370, 520, 921
MaeI	CTAG	2 cut(s)	108, 1023
MaeII	ACGT	4 cut(s)	763, 847, 856, 1027
MaeIII	GTNAC	2 cut(s)	658, 944
MalI	GATC	1 cut(s)	921
MboI	GATC	1 cut(s)	919
MboII	GAAGA	7 cut(s)	77, 140, 212, 227, 434, 451, 904
MfeI	CAATTG	1 cut(s)	210
MluCI	AATT	8 cut(s)	210, 319, 397, 619, 699, 795, 799, 894
MmeI	TCCRAC	1 cut(s)	417
Mph1103I	ATGCAT	1 cut(s)	1050
MseI	TTAA	3 cut(s)	228, 600, 798
MslI	CAYNNNNRTG	1 cut(s)	458
MspI	CCGG	1 cut(s)	266
MspR9I	CCNGG	3 cut(s)	267, 724, 999
MunI	CAATTG	1 cut(s)	210
MvaI	CCWGG	2 cut(s)	724, 999
MwoI	GCNNNNNNNGC	1 cut(s)	187
NciI	CCSGG	1 cut(s)	267
NdeII	GATC	1 cut(s)	919
NlaIII	CATG	5 cut(s)	478, 674, 794, 956, 980
NlaIV	GGNNCC	1 cut(s)	168
NmuCI	GTSAC	1 cut(s)	658
NsbI	TGCGCA	1 cut(s)	186
NsiI	ATGCAT	1 cut(s)	1050
PciSI	GCTCTTC	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	2 cut(s)	844, 853
PfeI	GAWTC	2 cut(s)	310, 517
PkrI	GCNGC	4 cut(s)	7, 76, 189, 360
PshBI	ATTAAT	1 cut(s)	798
Psp6I	CCWGG	2 cut(s)	722, 997
PspGI	CCWGG	2 cut(s)	722, 997
PspN4I	GGNNCC	1 cut(s)	168
PspPI	GGNCC	4 cut(s)	19, 146, 720, 787
PstNI	CAGNNNCTG	1 cut(s)	62
RsaI	GTAC	1 cut(s)	850
RsaNI	GTAC	1 cut(s)	849
RseI	CAYNNNNRTG	1 cut(s)	458
SapI	GCTCTTC	1 cut(s)	417
SaqAI	TTAA	3 cut(s)	228, 600, 798
SatI	GCNGC	4 cut(s)	6, 75, 188, 359
Sau3AI	GATC	1 cut(s)	919
Sau96I	GGNCC	4 cut(s)	19, 146, 720, 787
ScrFI	CCNGG	3 cut(s)	267, 724, 999
SfaNI	GCATC	3 cut(s)	370, 520, 921
SinI	GGWCC	1 cut(s)	720
SmiMI	CAYNNNNRTG	1 cut(s)	458
SmlI	CTYRAG	2 cut(s)	814, 923
SmoI	CTYRAG	2 cut(s)	814, 923
Sse9I	AATT	8 cut(s)	210, 319, 397, 619, 699, 795, 799, 894
SsiI	CCGC	5 cut(s)	5, 50, 271, 359, 485
SspMI	CTAG	2 cut(s)	108, 1023
StyD4I	CCNGG	3 cut(s)	265, 722, 997
TaaI	ACNGT	1 cut(s)	950
TaiI	ACGT	4 cut(s)	766, 850, 859, 1030
TasI	AATT	8 cut(s)	210, 319, 397, 619, 699, 795, 799, 894
TauI	GCSGC	2 cut(s)	8, 361
TfiI	GAWTC	2 cut(s)	310, 517
Tru1I	TTAA	3 cut(s)	228, 600, 798
Tru9I	TTAA	3 cut(s)	228, 600, 798
TscAI	CASTG	3 cut(s)	320, 874, 910
TseFI	GTSAC	1 cut(s)	658
TseI	GCWGC	2 cut(s)	74, 187
Tsp45I	GTSAC	1 cut(s)	658
TspDTI	ATGAA	2 cut(s)	435, 993
TspGWI	ACGGA	1 cut(s)	764
TspRI	CASTG	3 cut(s)	320, 874, 910
VpaK11BI	GGWCC	1 cut(s)	720
VspI	ATTAAT	1 cut(s)	798
XspI	CTAG	2 cut(s)	108, 1023
Zsp2I	ATGCAT	1 cut(s)	1050

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.