Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

11054731 .. 11056959

Gene Structure 2229 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G31010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1083 bp

ATGCAGTTTCTTGGAAGATCAATTTCGAAATCGATAAGACCTTCGTTAAATTCAACTGCTAGAAAATCATGGGTTCTTTCTTCTCAGCAATTTCTTTCAACTTCTTCTACGGAAAGTAGTAGCCGTACTCGCGGAGGAGGAGGAGGAAACAGAGCTGAGAAATCGTCGGAGGAGTGGCCGAGACCGATGGAGGTACCGTACCAACCCAAAATCGCGAACTCTATAGATTTAATTGGTTACGTTCACCAACCAGTTCAGTTCGACTCTACACTCGATGGAAAATTCTGGGCAGGCACAGTCATTTCTCATGAACCTTCTTCTGATTCCAAGTCTGAGTCTGATTCATCTAGTAACTTCTGGATTCCGGTACTGTTTGAAGGGGATTTAGCTCATACGGCTAACTCTTATTTGAAGAAAAACGATCGGGTTCATATTACTGGACAGATTTTAGGAGATGTGATTCAATCTGGAGCAAATTCTGACCAAGCACATGTTCAGTTGTTTAAAAGCTTTCATGGTAGCTTTTCACATCAAGTAATGGTTCGTGATCTCCACTACATTGAAGGTTCTAAAGCCATGCCAAAGGTTTTGCCAACGTTGGATCAAAATGAAGGTGTGCTAAAGCATTCTGCTAGCGTTCAAAGAGGAAGAGAATTTGGAACTAATCTTTGGTTTGATCTTGTTGATAAACCGAATGAATGGTGTGATTACCGTGAAATGAAACAGAATGGATCGGTTAATCCTAAACACCCTGATTTCAAGAAGAAAGACGGGAGTCAAGCGCTTTGGCTTAACAATGCTCCTACAGAGATATTGTCCGAGCTCAAAGACGTGAAGTTTGATATTCCAAAATACGCAAAACAACCAAAGGCCGGAGAGGAATCATGGAAGGACTTGGTAGATAACATGAATAAGTGGTGGGACAATAGAGTGGACAAGAGAACCCCAAAATCGCCGGATTTTAAGCACAAAGAAACCGGTGTAGGTCTCTGGCTAAGTGACTCTCCGAGCTGGGTGTTAGAAAAACTGCCTCCCCCAAAGAGCAAAACAAGTGACATCTACGGTGTACAAGAGATGTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

360

Amino Acids

40.63

Weight (kDa)

7.81

Isoelectric Point (pI)

40.44

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	193
AccII	CGCG	2 cut(s)	132, 215
AciI	CCGC	1 cut(s)	132
AclI	AACGTT	1 cut(s)	596
AclWI	GGATC	2 cut(s)	609, 739
AcoI	YGGCCR	1 cut(s)	176
AcsI	RAATTY	4 cut(s)	49, 281, 475, 653
AfaI	GTAC	5 cut(s)	127, 195, 200, 369, 1068
AfeI	AGCGCT	1 cut(s)	783
AfiI	CCNNNNNNNGG	1 cut(s)	872
AflIII	ACRYGT	1 cut(s)	490
AgeI	ACCGGT	1 cut(s)	977
AgsI	TTSAA	8 cut(s)	54, 99, 377, 412, 464, 563, 641, 760
AjiI	CACGTC	1 cut(s)	832
AjuI	GAANNNNNNNTTGG	4 cut(s)	477, 509, 652, 684
AluBI	AGCT	6 cut(s)	155, 389, 510, 522, 823, 1011
AluI	AGCT	6 cut(s)	155, 389, 510, 522, 823, 1011
Alw21I	GWGCWC	1 cut(s)	825
Alw26I	GTCTC	2 cut(s)	175, 992
AlwI	GGATC	2 cut(s)	609, 739
Aor51HI	AGCGCT	1 cut(s)	783
AoxI	GGCC	2 cut(s)	176, 870
ApoI	RAATTY	4 cut(s)	49, 281, 475, 653
ArsI	GACNNNNNNTTYG	2 cut(s)	821, 853
AsiGI	ACCGGT	1 cut(s)	977
Asp718I	GGTACC	1 cut(s)	193
AspLEI	GCGC	1 cut(s)	784
AsuHPI	GGTGA	1 cut(s)	236
AsuII	TTCGAA	1 cut(s)	26
AsuNHI	GCTAGC	1 cut(s)	632
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	825
Bbv12I	GWGCWC	1 cut(s)	825
BccI	CCATC	2 cut(s)	181, 269
BceAI	ACGGC	2 cut(s)	108, 411
BcoDI	GTCTC	2 cut(s)	175, 992
BfaI	CTAG	3 cut(s)	60, 348, 633
BfmI	CTRYAG	2 cut(s)	222, 804
BfoI	RGCGCY	1 cut(s)	785
BmgBI	CACGTC	1 cut(s)	832
BmiI	GGNNCC	1 cut(s)	195
BmtI	GCTAGC	1 cut(s)	636
BoxI	GACNNNNGTC	1 cut(s)	774
BpmI	CTGGAG	1 cut(s)	489
Bpu14I	TTCGAA	1 cut(s)	26
Bsa29I	ATCGAT	1 cut(s)	32
BsaI	GGTCTC	2 cut(s)	175, 992
BsaWI	WCCGGW	2 cut(s)	364, 977
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	1 cut(s)	872
Bse118I	RCCGGY	1 cut(s)	977
Bse1I	ACTGG	2 cut(s)	251, 442
BseCI	ATCGAT	1 cut(s)	32
BseLI	CCNNNNNNNGG	1 cut(s)	872
BseMII	CTCAG	3 cut(s)	98, 147, 324
BseNI	ACTGG	2 cut(s)	251, 442
BseRI	GAGGAG	4 cut(s)	150, 153, 156, 185
BseYI	CCCAGC	1 cut(s)	1011
Bsh1236I	CGCG	2 cut(s)	132, 215
Bsh1285I	CGRYCG	1 cut(s)	424
BshFI	GGCC	2 cut(s)	178, 872
BshNI	GGYRCC	1 cut(s)	193
BshTI	ACCGGT	1 cut(s)	977
BshVI	ATCGAT	1 cut(s)	32
BsiEI	CGRYCG	1 cut(s)	424
BsiHKAI	GWGCWC	1 cut(s)	825
BsiSI	CCGG	4 cut(s)	365, 873, 956, 978
BslFI	GGGAC	1 cut(s)	935
BslI	CCNNNNNNNGG	1 cut(s)	872
BsmAI	GTCTC	2 cut(s)	175, 992
BsmFI	GGGAC	1 cut(s)	935
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	2 cut(s)	178, 872
Bso31I	GGTCTC	2 cut(s)	175, 992
Bsp119I	TTCGAA	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	825
Bsp1407I	TGTACA	1 cut(s)	1066
Bsp143I	GATC	6 cut(s)	17, 421, 547, 601, 676, 731
Bsp68I	TCGCGA	1 cut(s)	215
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	2 cut(s)	178, 872
BspCNI	CTCAG	3 cut(s)	97, 148, 325
BspDI	ATCGAT	1 cut(s)	32
BspFNI	CGCG	2 cut(s)	132, 215
BspHI	TCATGA	1 cut(s)	307
BspLI	GGNNCC	1 cut(s)	195
BspOI	GCTAGC	1 cut(s)	636
BspPI	GGATC	2 cut(s)	609, 739
BspT104I	TTCGAA	1 cut(s)	26
BspT107I	GGYRCC	1 cut(s)	193
BspTNI	GGTCTC	2 cut(s)	175, 992
BsrFI	RCCGGY	1 cut(s)	977
BsrGI	TGTACA	1 cut(s)	1066
BsrI	ACTGG	2 cut(s)	251, 442
BssAI	RCCGGY	1 cut(s)	977
BssMI	GATC	6 cut(s)	17, 421, 547, 601, 676, 731
Bst4CI	ACNGT	5 cut(s)	198, 298, 372, 713, 1064
Bst6I	CTCTTC	1 cut(s)	643
BstAUI	TGTACA	1 cut(s)	1066
BstBI	TTCGAA	1 cut(s)	26
BstC8I	GCNNGC	2 cut(s)	292, 634
BstDEI	CTNAG	4 cut(s)	84, 156, 333, 995
BstFNI	CGCG	2 cut(s)	132, 215
BstH2I	RGCGCY	1 cut(s)	785
BstHHI	GCGC	1 cut(s)	784
BstKTI	GATC	6 cut(s)	20, 424, 550, 604, 679, 734
BstMAI	GTCTC	2 cut(s)	175, 992
BstMBI	GATC	6 cut(s)	17, 421, 547, 601, 676, 731
BstMCI	CGRYCG	1 cut(s)	424
BstMWI	GCNNNNNNNGC	2 cut(s)	129, 395
BstNSI	RCATGY	1 cut(s)	494
BstPAI	GACNNNNGTC	1 cut(s)	774
BstSFI	CTRYAG	2 cut(s)	222, 804
BstUI	CGCG	2 cut(s)	132, 215
Bsu15I	ATCGAT	1 cut(s)	32
BsuRI	GGCC	2 cut(s)	178, 872
BsuTUI	ATCGAT	1 cut(s)	32
BtrI	CACGTC	1 cut(s)	832
BtuMI	TCGCGA	1 cut(s)	215
Cac8I	GCNNGC	2 cut(s)	292, 634
CciI	TCATGA	1 cut(s)	307
CfoI	GCGC	1 cut(s)	784
Cfr10I	RCCGGY	1 cut(s)	977
ClaI	ATCGAT	1 cut(s)	32
Csp6I	GTAC	5 cut(s)	126, 194, 199, 368, 1067
CspAI	ACCGGT	1 cut(s)	977
CviAII	CATG	7 cut(s)	69, 308, 491, 515, 577, 885, 907
CviQI	GTAC	5 cut(s)	126, 194, 199, 368, 1067
DdeI	CTNAG	4 cut(s)	84, 156, 333, 995
DpnI	GATC	6 cut(s)	19, 423, 549, 603, 678, 733
DpnII	GATC	6 cut(s)	17, 421, 547, 601, 676, 731
DraI	TTTAAA	1 cut(s)	505
EaeI	YGGCCR	1 cut(s)	176
Eam1104I	CTCTTC	1 cut(s)	643
EarI	CTCTTC	1 cut(s)	643
Ecl136II	GAGCTC	1 cut(s)	823
Eco24I	GRGCYC	1 cut(s)	825
Eco31I	GGTCTC	2 cut(s)	175, 992
Eco47III	AGCGCT	1 cut(s)	783
Eco53kI	GAGCTC	1 cut(s)	823
EcoICRI	GAGCTC	1 cut(s)	823
EcoT38I	GRGCYC	1 cut(s)	825
FaeI	CATG	7 cut(s)	72, 311, 494, 518, 580, 888, 910
FaqI	GGGAC	1 cut(s)	935
FatI	CATG	7 cut(s)	68, 307, 490, 514, 576, 884, 906
FriOI	GRGCYC	1 cut(s)	825
FspBI	CTAG	3 cut(s)	60, 348, 633
GlaI	GCGC	1 cut(s)	783
GsaI	CCCAGC	1 cut(s)	1015
GsuI	CTGGAG	1 cut(s)	489
HaeII	RGCGCY	1 cut(s)	785
HaeIII	GGCC	2 cut(s)	178, 872
HapII	CCGG	4 cut(s)	365, 873, 956, 978
HhaI	GCGC	1 cut(s)	784
Hin1II	CATG	7 cut(s)	72, 311, 494, 518, 580, 888, 910
Hin6I	GCGC	1 cut(s)	782
HinP1I	GCGC	1 cut(s)	782
HindIII	AAGCTT	1 cut(s)	508
HinfI	GANTC	9 cut(s)	263, 323, 335, 341, 361, 460, 775, 881, 1001
HpaII	CCGG	4 cut(s)	365, 873, 956, 978
HphI	GGTGA	1 cut(s)	236
Hpy166II	GTNNAC	3 cut(s)	244, 934, 1067
Hpy188I	TCNGA	7 cut(s)	169, 322, 334, 340, 481, 820, 1008
Hpy188III	TCNNGA	6 cut(s)	214, 308, 358, 468, 545, 760
Hpy8I	GTNNAC	3 cut(s)	244, 934, 1067
Hpy99I	CGWCG	1 cut(s)	169
HpyAV	CCTTC	6 cut(s)	51, 324, 371, 557, 605, 883
HpyCH4III	ACNGT	5 cut(s)	198, 298, 372, 713, 1064
HpyCH4IV	ACGT	3 cut(s)	240, 596, 831
HpyCH4V	TGCA	1 cut(s)	4
HpyF10VI	GCNNNNNNNGC	2 cut(s)	129, 395
HpyF3I	CTNAG	4 cut(s)	84, 156, 333, 995
HpySE526I	ACGT	3 cut(s)	240, 596, 831
Hsp92II	CATG	7 cut(s)	72, 311, 494, 518, 580, 888, 910
HspAI	GCGC	1 cut(s)	782
KpnI	GGTACC	1 cut(s)	197
Kzo9I	GATC	6 cut(s)	17, 421, 547, 601, 676, 731
LmnI	GCTCC	2 cut(s)	470, 805
MaeI	CTAG	3 cut(s)	60, 348, 633
MaeII	ACGT	3 cut(s)	240, 596, 831
MaeIII	GTNAC	4 cut(s)	236, 350, 998, 1052
MalI	GATC	6 cut(s)	19, 423, 549, 603, 678, 733
MboI	GATC	6 cut(s)	17, 421, 547, 601, 676, 731
MboII	GAAGA	7 cut(s)	27, 72, 96, 309, 424, 660, 775
MhlI	GDGCHC	1 cut(s)	825
MluCI	AATT	7 cut(s)	21, 49, 89, 231, 281, 475, 653
MlyI	GAGTC	4 cut(s)	257, 344, 784, 995
MmeI	TCCRAC	2 cut(s)	147, 579
MnlI	CCTC	9 cut(s)	128, 131, 134, 137, 163, 184, 638, 871, 1041
MseI	TTAA	6 cut(s)	47, 230, 504, 738, 792, 963
MspI	CCGG	4 cut(s)	365, 873, 956, 978
Mva1269I	GAATGC	1 cut(s)	625
MvnI	CGCG	2 cut(s)	132, 215
MwoI	GCNNNNNNNGC	2 cut(s)	129, 395
NdeII	GATC	6 cut(s)	17, 421, 547, 601, 676, 731
NheI	GCTAGC	1 cut(s)	632
NlaIII	CATG	7 cut(s)	72, 311, 494, 518, 580, 888, 910
NlaIV	GGNNCC	1 cut(s)	195
NmeAIII	GCCGAG	1 cut(s)	204
NmuCI	GTSAC	2 cut(s)	998, 1052
NruI	TCGCGA	1 cut(s)	215
NspI	RCATGY	1 cut(s)	494
NspV	TTCGAA	1 cut(s)	26
PagI	TCATGA	1 cut(s)	307
PciI	ACATGT	1 cut(s)	490
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	5 cut(s)	323, 341, 361, 460, 881
PinAI	ACCGGT	1 cut(s)	977
Ple19I	CGATCG	1 cut(s)	424
PleI	GAGTC	4 cut(s)	257, 343, 783, 995
PpsI	GAGTC	4 cut(s)	257, 343, 783, 995
PscI	ACATGT	1 cut(s)	490
PshAI	GACNNNNGTC	1 cut(s)	774
Psp124BI	GAGCTC	1 cut(s)	825
Psp1406I	AACGTT	1 cut(s)	596
PspFI	CCCAGC	1 cut(s)	1011
PspN4I	GGNNCC	1 cut(s)	195
PvuI	CGATCG	1 cut(s)	424
RruI	TCGCGA	1 cut(s)	215
RsaI	GTAC	5 cut(s)	127, 195, 200, 369, 1068
RsaNI	GTAC	5 cut(s)	126, 194, 199, 368, 1067
SacI	GAGCTC	1 cut(s)	825
SaqAI	TTAA	6 cut(s)	47, 230, 504, 738, 792, 963
Sau3AI	GATC	6 cut(s)	17, 421, 547, 601, 676, 731
SchI	GAGTC	4 cut(s)	257, 344, 784, 995
SduI	GDGCHC	1 cut(s)	825
SfcI	CTRYAG	2 cut(s)	222, 804
SfuI	TTCGAA	1 cut(s)	26
Sse9I	AATT	7 cut(s)	21, 49, 89, 231, 281, 475, 653
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	3 cut(s)	60, 348, 633
SstI	GAGCTC	1 cut(s)	825
TaaI	ACNGT	5 cut(s)	198, 298, 372, 713, 1064
TaiI	ACGT	3 cut(s)	243, 599, 834
TaqI	TCGA	4 cut(s)	26, 32, 261, 273
TaqII	GACCGA	1 cut(s)	199
TasI	AATT	7 cut(s)	21, 49, 89, 231, 281, 475, 653
TatI	WGTACW	1 cut(s)	1066
TfiI	GAWTC	5 cut(s)	323, 341, 361, 460, 881
Tru1I	TTAA	6 cut(s)	47, 230, 504, 738, 792, 963
Tru9I	TTAA	6 cut(s)	47, 230, 504, 738, 792, 963
TseFI	GTSAC	2 cut(s)	998, 1052
Tsp45I	GTSAC	2 cut(s)	998, 1052
TspDTI	ATGAA	8 cut(s)	324, 333, 419, 503, 624, 711, 734, 923
TspGWI	ACGGA	1 cut(s)	125
XapI	RAATTY	4 cut(s)	49, 281, 475, 653
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	3 cut(s)	60, 348, 633

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.