Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014160.1

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 951

Gene Structure 951 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014160.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 582 bp

atggagctctgttccggcacggtagcagcagcaaccactggccactacttcactcctctccactctcaatcccacacccccaaatccaaaccccccaactttgccatgaactccctcttccgatcaacacccttaaccaaacgcctcccatttcgtcccttacaatcccactactccaccacctcccccactaaacccaaaaccccaaacacctacaccatcaccacccctcgtttcactccaaagtctccaccccccaccaagcccaacttccctcgccccactgaagtccccttccagcccaaagtcgccaactccgtccgcctcatcggccacgtccgtacgccgcttcaggtccagactacccaagatggagctttctgggccgccaccgttctcaccgcgttttcttcttcttcttcttcttcggccaagtctctccggattccgattattttcgaggggcacttggctcacattgcgagtttacatgtgaaagacggtgattatgtgtttgttgctgggaatttgaggtcggatttgaatcatcttaatgctagtgagggtcaggctcgtttgcag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

194

Amino Acids

21.21

Weight (kDa)

10.37

Isoelectric Point (pI)

50.66

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	404
AccIII	TCCGGA	1 cut(s)	441
AciI	CCGC	4 cut(s)	322, 347, 387, 402
AcoI	YGGCCR	3 cut(s)	40, 331, 429
AcsI	RAATTY	1 cut(s)	526
AcuI	CTGAAG	2 cut(s)	306, 335
AfaI	GTAC	1 cut(s)	343
AflIII	ACRYGT	1 cut(s)	490
AgsI	TTSAA	1 cut(s)	544
AjiI	CACGTC	1 cut(s)	337
AjuI	GAANNNNNNNTTGG	2 cut(s)	254, 286
AluBI	AGCT	2 cut(s)	7, 377
AluI	AGCT	2 cut(s)	7, 377
Alw21I	GWGCWC	1 cut(s)	9
Alw26I	GTCTC	2 cut(s)	252, 441
Aor13HI	TCCGGA	1 cut(s)	441
AoxI	GGCC	4 cut(s)	40, 331, 384, 429
ApeKI	GCWGC	2 cut(s)	26, 29
ApoI	RAATTY	1 cut(s)	526
AspS9I	GGNCC	2 cut(s)	355, 384
AsuHPI	GGTGA	3 cut(s)	214, 391, 515
AvaII	GGWCC	1 cut(s)	355
BaeGI	GKGCMC	1 cut(s)	468
BalI	TGGCCA	1 cut(s)	42
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	38, 41
BccI	CCATC	2 cut(s)	227, 365
BcoDI	GTCTC	2 cut(s)	252, 441
BfaI	CTAG	1 cut(s)	558
BglI	GCCNNNNNGGC	1 cut(s)	330
BisI	GCNGC	4 cut(s)	27, 30, 347, 387
BlsI	GCNGC	4 cut(s)	28, 31, 348, 388
Bme18I	GGWCC	1 cut(s)	355
BmgBI	CACGTC	1 cut(s)	337
BmgT120I	GGNCC	2 cut(s)	355, 384
BsaBI	GATNNNNATC	1 cut(s)	543
BsaWI	WCCGGW	1 cut(s)	441
Bse1I	ACTGG	1 cut(s)	43
Bse3DI	GCAATG	1 cut(s)	477
Bse8I	GATNNNNATC	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	441
BseJI	GATNNNNATC	1 cut(s)	543
BseMI	GCAATG	1 cut(s)	477
BseNI	ACTGG	1 cut(s)	43
BseRI	GAGGAG	1 cut(s)	45
BseSI	GKGCMC	1 cut(s)	468
BseXI	GCAGC	2 cut(s)	38, 41
BseYI	CCCAGC	1 cut(s)	521
Bsh1236I	CGCG	1 cut(s)	404
BshFI	GGCC	4 cut(s)	42, 333, 386, 431
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	2 cut(s)	15, 442
BsiWI	CGTACG	1 cut(s)	341
BslFI	GGGAC	2 cut(s)	141, 275
BsmAI	GTCTC	2 cut(s)	252, 441
BsmFI	GGGAC	2 cut(s)	141, 275
BsnI	GGCC	4 cut(s)	42, 333, 386, 431
Bsp1286I	GDGCHC	2 cut(s)	9, 468
Bsp13I	TCCGGA	1 cut(s)	441
Bsp143I	GATC	1 cut(s)	122
BspACI	CCGC	4 cut(s)	322, 347, 387, 402
BspANI	GGCC	4 cut(s)	42, 333, 386, 431
BspEI	TCCGGA	1 cut(s)	441
BspFNI	CGCG	1 cut(s)	404
BsrDI	GCAATG	1 cut(s)	477
BsrI	ACTGG	1 cut(s)	43
BssMI	GATC	1 cut(s)	122
Bst4CI	ACNGT	3 cut(s)	22, 394, 503
Bst6I	CTCTTC	1 cut(s)	122
BstFNI	CGCG	1 cut(s)	404
BstKTI	GATC	1 cut(s)	125
BstMAI	GTCTC	2 cut(s)	252, 441
BstMBI	GATC	1 cut(s)	122
BstMWI	GCNNNNNNNGC	3 cut(s)	330, 383, 479
BstNSI	RCATGY	1 cut(s)	494
BstSLI	GKGCMC	1 cut(s)	468
BstUI	CGCG	1 cut(s)	404
BstV1I	GCAGC	2 cut(s)	38, 41
BsuRI	GGCC	4 cut(s)	42, 333, 386, 431
BtrI	CACGTC	1 cut(s)	337
BtsIMutI	CAGTG	2 cut(s)	36, 282
Cfr13I	GGNCC	2 cut(s)	355, 384
Csp6I	GTAC	1 cut(s)	342
CviAII	CATG	2 cut(s)	106, 491
CviQI	GTAC	1 cut(s)	342
DpnI	GATC	1 cut(s)	124
DpnII	GATC	1 cut(s)	122
EaeI	YGGCCR	3 cut(s)	40, 331, 429
Eam1104I	CTCTTC	1 cut(s)	122
EarI	CTCTTC	1 cut(s)	122
EciI	GGCGGA	1 cut(s)	311
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	355
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	2 cut(s)	306, 335
EcoICRI	GAGCTC	1 cut(s)	7
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	2 cut(s)	109, 494
FaiI	YATR	3 cut(s)	107, 492, 510
FalI	AAGNNNNNCTT	2 cut(s)	254, 286
FaqI	GGGAC	2 cut(s)	141, 275
FatI	CATG	2 cut(s)	105, 490
Fnu4HI	GCNGC	4 cut(s)	27, 30, 347, 387
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	27, 30, 347, 387
FspBI	CTAG	1 cut(s)	558
GluI	GCNGC	4 cut(s)	27, 30, 347, 387
GsaI	CCCAGC	1 cut(s)	525
HaeIII	GGCC	4 cut(s)	42, 333, 386, 431
HapII	CCGG	2 cut(s)	15, 442
Hin1II	CATG	2 cut(s)	109, 494
HinfI	GANTC	2 cut(s)	445, 544
HpaII	CCGG	2 cut(s)	15, 442
HphI	GGTGA	3 cut(s)	214, 391, 515
Hpy166II	GTNNAC	1 cut(s)	488
Hpy188I	TCNGA	3 cut(s)	122, 450, 538
Hpy188III	TCNNGA	2 cut(s)	358, 442
Hpy8I	GTNNAC	1 cut(s)	488
HpyAV	CCTTC	1 cut(s)	304
HpyCH4III	ACNGT	3 cut(s)	22, 394, 503
HpyCH4IV	ACGT	1 cut(s)	336
HpyCH4V	TGCA	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	3 cut(s)	330, 383, 479
HpySE526I	ACGT	1 cut(s)	336
Hsp92II	CATG	2 cut(s)	109, 494
Kpn2I	TCCGGA	1 cut(s)	441
Kzo9I	GATC	1 cut(s)	122
LmnI	GCTCC	2 cut(s)	4, 374
LpnPI	CCDG	9 cut(s)	24, 28, 311, 338, 367, 371, 455, 507, 554
Lsp1109I	GCAGC	2 cut(s)	38, 41
MaeI	CTAG	1 cut(s)	558
MaeII	ACGT	1 cut(s)	336
MalI	GATC	1 cut(s)	124
MboI	GATC	1 cut(s)	122
MboII	GAAGA	7 cut(s)	109, 402, 405, 408, 411, 414, 417
MhlI	GDGCHC	2 cut(s)	9, 468
MlsI	TGGCCA	1 cut(s)	42
MluCI	AATT	1 cut(s)	526
MluNI	TGGCCA	1 cut(s)	42
MmeI	TCCRAC	1 cut(s)	516
Mox20I	TGGCCA	1 cut(s)	42
MroI	TCCGGA	1 cut(s)	441
MscI	TGGCCA	1 cut(s)	42
MseI	TTAA	2 cut(s)	134, 552
MslI	CAYNNNNRTG	1 cut(s)	552
Msp20I	TGGCCA	1 cut(s)	42
MspI	CCGG	2 cut(s)	15, 442
MvnI	CGCG	1 cut(s)	404
MwoI	GCNNNNNNNGC	3 cut(s)	330, 383, 479
NdeII	GATC	1 cut(s)	122
NlaIII	CATG	2 cut(s)	109, 494
NspI	RCATGY	1 cut(s)	494
PciI	ACATGT	1 cut(s)	490
PcsI	WCGNNNNNNNCGW	1 cut(s)	315
PfeI	GAWTC	2 cut(s)	445, 544
Pfl23II	CGTACG	1 cut(s)	341
PkrI	GCNGC	4 cut(s)	28, 31, 348, 388
PscI	ACATGT	1 cut(s)	490
Psp124BI	GAGCTC	1 cut(s)	9
PspFI	CCCAGC	1 cut(s)	521
PspLI	CGTACG	1 cut(s)	341
PspPI	GGNCC	2 cut(s)	355, 384
RsaI	GTAC	1 cut(s)	343
RsaNI	GTAC	1 cut(s)	342
RseI	CAYNNNNRTG	1 cut(s)	552
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	2 cut(s)	134, 552
SatI	GCNGC	4 cut(s)	27, 30, 347, 387
Sau3AI	GATC	1 cut(s)	122
Sau96I	GGNCC	2 cut(s)	355, 384
SduI	GDGCHC	2 cut(s)	9, 468
SetI	ASST	7 cut(s)	9, 185, 215, 339, 357, 379, 536
SinI	GGWCC	1 cut(s)	355
SmiMI	CAYNNNNRTG	1 cut(s)	552
Sse9I	AATT	1 cut(s)	526
SsiI	CCGC	4 cut(s)	322, 347, 387, 402
SspMI	CTAG	1 cut(s)	558
SstI	GAGCTC	1 cut(s)	9
TaaI	ACNGT	3 cut(s)	22, 394, 503
TaiI	ACGT	1 cut(s)	339
TaqI	TCGA	1 cut(s)	459
TasI	AATT	1 cut(s)	526
TauI	GCSGC	2 cut(s)	349, 389
TfiI	GAWTC	2 cut(s)	445, 544
Tru1I	TTAA	2 cut(s)	134, 552
Tru9I	TTAA	2 cut(s)	134, 552
TscAI	CASTG	2 cut(s)	43, 289
TseI	GCWGC	2 cut(s)	26, 29
TspDTI	ATGAA	1 cut(s)	122
TspGWI	ACGGA	2 cut(s)	307, 329
TspRI	CASTG	2 cut(s)	43, 289
VpaK11BI	GGWCC	1 cut(s)	355
XapI	RAATTY	1 cut(s)	526
XceI	RCATGY	1 cut(s)	494
XspI	CTAG	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.