Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5C

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

14358381 .. 14362409

Gene Structure 4029 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5CG154800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 978 bp

ATGGAGCTCTGTTCCGGCACGGTAGCAGCAGCAACCACAACCTCACCTGGCCACTACTTCACTCCTCTCCACTCTCAACCCCACACCCCCAAATCCAAACCCCCCAACTTTGCCATGAACTCCCTCTTCCGATCAACACCGTTCACCAAACGCCTCCCATTTCGTCCCTTACAATCCCACTACTCCTCCACCTCCACCACTAAACCCAAAACCCCAAACACCTACACCATCTCCACCCCTCGTTTCACTCCAAAGTCCCCACCCCCCACCAAGCCCAACTTCCCCCGCCCCACTGAAGTCCCCTTCCAGCCCAAAGTCGCCAACTCCGTCCGCCTCATCGGCCACGTCCGTACGCCGCTTCAGGTCCAGACTACCCAAGATGGAGCTTTCTGGGCCGCCACCGTTCTCACCGCGTTTTCTTCTTCTTCTTCGTCCAAGTCGCTCCGGATTCCGATTATTTTCGAGGGGGACTTGGCTCACATTGCGAGTTTACATGTGAAAGACGATGATTATGTGTTTGTTGCTGGGAATTTGAGGTCGGATTTGAATCATCTTAATGCTCATGAGGGTCAGGCTCGTTTGCAGGTAAAGCGAAATCACCCTGATTTCAAGTGTAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCTGAAGCCCAAACAAGCAAATGAGGGTAGAGGTGATAAATCCTGGAAGGACTTGGTGGAAAACCCAGATAAATGGTGGGATAACAGATTGCAGAAGCGGAACGCAAAAGCTCCAGACTTTAAGCACAAAGAAACTGGTGAAGCGCTGTGGCTTAACAGTTCACCGGCATGGGCGATCCCCATGTTGCCACCTTTGAAAACACAGCAAAATATGACAACTGACGATAGGAATACACCTCTTCCTCGAAACATGGAAGCATCCGTTAGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000229 GO:0005575 GO:0005622 GO:0005623 GO:0005694 GO:0005737 GO:0009295 GO:0009508 GO:0009532 GO:0009536 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044435 GO:0044444 GO:0044446 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

SSB

Protein Analysis

325

Amino Acids

36.37

Weight (kDa)

9.8

Isoelectric Point (pI)

44.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	574
Acc65I	GGTACC	1 cut(s)	649
AccB1I	GGYRCC	1 cut(s)	649
AccII	CGCG	1 cut(s)	413
AccIII	TCCGGA	1 cut(s)	444
AciI	CCGC	7 cut(s)	286, 331, 356, 396, 411, 653, 799
AclWI	GGATC	1 cut(s)	871
AcoI	YGGCCR	2 cut(s)	49, 340
AcsI	RAATTY	1 cut(s)	529
AcuI	CTGAAG	3 cut(s)	315, 344, 725
AfaI	GTAC	2 cut(s)	352, 651
AfeI	AGCGCT	1 cut(s)	846
AflIII	ACRYGT	1 cut(s)	493
AgsI	TTSAA	3 cut(s)	547, 610, 898
AjiI	CACGTC	1 cut(s)	346
AjnI	CCWGG	2 cut(s)	46, 743
AjuI	GAANNNNNNNTTGG	2 cut(s)	263, 295
AluBI	AGCT	4 cut(s)	7, 386, 673, 812
AluI	AGCT	4 cut(s)	7, 386, 673, 812
Alw21I	GWGCWC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	871
Aor13HI	TCCGGA	1 cut(s)	444
Aor51HI	AGCGCT	1 cut(s)	846
AoxI	GGCC	3 cut(s)	49, 340, 393
ApeKI	GCWGC	2 cut(s)	26, 29
ApoI	RAATTY	1 cut(s)	529
Asp718I	GGTACC	1 cut(s)	649
AspLEI	GCGC	1 cut(s)	847
AspS9I	GGNCC	2 cut(s)	364, 393
AsuHPI	GGTGA	7 cut(s)	36, 136, 400, 590, 746, 851, 855
AvaII	GGWCC	1 cut(s)	364
BaeI	ACNNNNGTAYC	2 cut(s)	641, 674
BalI	TGGCCA	1 cut(s)	51
BanI	GGYRCC	1 cut(s)	649
BanII	GRGCYC	1 cut(s)	9
Bbv12I	GWGCWC	1 cut(s)	9
BbvI	GCAGC	2 cut(s)	38, 41
BccI	CCATC	3 cut(s)	236, 374, 614
BciT130I	CCWGG	2 cut(s)	48, 745
BfoI	RGCGCY	1 cut(s)	848
BfuAI	ACCTGC	1 cut(s)	574
BglI	GCCNNNNNGGC	1 cut(s)	339
BisI	GCNGC	4 cut(s)	27, 30, 356, 396
BlsI	GCNGC	4 cut(s)	28, 31, 357, 397
Bme1390I	CCNGG	2 cut(s)	48, 745
Bme18I	GGWCC	1 cut(s)	364
BmgBI	CACGTC	1 cut(s)	346
BmgT120I	GGNCC	2 cut(s)	364, 393
BmiI	GGNNCC	1 cut(s)	651
BmrFI	CCNGG	2 cut(s)	48, 745
BmsI	GCATC	1 cut(s)	968
BpmI	CTGGAG	1 cut(s)	798
BsaBI	GATNNNNATC	1 cut(s)	546
BsaWI	WCCGGW	1 cut(s)	444
BsaXI	ACNNNNNCTCC	4 cut(s)	170, 200, 215, 245
Bse118I	RCCGGY	1 cut(s)	865
Bse1I	ACTGG	1 cut(s)	841
Bse3DI	GCAATG	1 cut(s)	480
Bse8I	GATNNNNATC	1 cut(s)	546
BseAI	TCCGGA	1 cut(s)	444
BseBI	CCWGG	2 cut(s)	48, 745
BseGI	GGATG	2 cut(s)	625, 959
BseJI	GATNNNNATC	1 cut(s)	546
BseMI	GCAATG	1 cut(s)	480
BseNI	ACTGG	1 cut(s)	841
BseRI	GAGGAG	2 cut(s)	54, 175
BseXI	GCAGC	2 cut(s)	38, 41
BseYI	CCCAGC	1 cut(s)	524
Bsh1236I	CGCG	1 cut(s)	413
BshFI	GGCC	3 cut(s)	51, 342, 395
BshNI	GGYRCC	1 cut(s)	649
BsiHKAI	GWGCWC	1 cut(s)	9
BsiSI	CCGG	3 cut(s)	15, 445, 866
BsiWI	CGTACG	1 cut(s)	350
BslFI	GGGAC	4 cut(s)	150, 241, 284, 482
BsmFI	GGGAC	4 cut(s)	150, 241, 284, 482
BsnI	GGCC	3 cut(s)	51, 342, 395
Bsp1286I	GDGCHC	1 cut(s)	9
Bsp13I	TCCGGA	1 cut(s)	444
Bsp143I	GATC	2 cut(s)	131, 876
BspACI	CCGC	7 cut(s)	286, 331, 356, 396, 411, 653, 799
BspANI	GGCC	3 cut(s)	51, 342, 395
BspEI	TCCGGA	1 cut(s)	444
BspFNI	CGCG	1 cut(s)	413
BspHI	TCATGA	1 cut(s)	562
BspLI	GGNNCC	1 cut(s)	651
BspMI	ACCTGC	1 cut(s)	574
BspPI	GGATC	1 cut(s)	871
BspT107I	GGYRCC	1 cut(s)	649
BsrDI	GCAATG	1 cut(s)	480
BsrFI	RCCGGY	1 cut(s)	865
BsrI	ACTGG	1 cut(s)	841
BssAI	RCCGGY	1 cut(s)	865
BssMI	GATC	2 cut(s)	131, 876
Bst2UI	CCWGG	2 cut(s)	48, 745
Bst4CI	ACNGT	4 cut(s)	22, 141, 403, 860
Bst6I	CTCTTC	2 cut(s)	131, 945
BstF5I	GGATG	2 cut(s)	625, 959
BstFNI	CGCG	1 cut(s)	413
BstH2I	RGCGCY	1 cut(s)	848
BstHHI	GCGC	1 cut(s)	847
BstKTI	GATC	2 cut(s)	134, 879
BstMBI	GATC	2 cut(s)	131, 876
BstMWI	GCNNNNNNNGC	4 cut(s)	339, 392, 482, 589
BstNI	CCWGG	2 cut(s)	48, 745
BstNSI	RCATGY	1 cut(s)	497
BstSCI	CCNGG	2 cut(s)	46, 743
BstUI	CGCG	1 cut(s)	413
BstV1I	GCAGC	2 cut(s)	38, 41
BstXI	CCANNNNNNTGG	1 cut(s)	774
BsuRI	GGCC	3 cut(s)	51, 342, 395
BtrI	CACGTC	1 cut(s)	346
BtsCI	GGATG	2 cut(s)	625, 959
BtsI	GCAGTG	1 cut(s)	662
BtsIMutI	CAGTG	2 cut(s)	291, 662
BveI	ACCTGC	1 cut(s)	574
CciI	TCATGA	1 cut(s)	562
CfoI	GCGC	1 cut(s)	847
Cfr10I	RCCGGY	1 cut(s)	865
Cfr13I	GGNCC	2 cut(s)	364, 393
Csp6I	GTAC	2 cut(s)	351, 650
CviAII	CATG	8 cut(s)	115, 494, 563, 629, 682, 870, 883, 952
CviQI	GTAC	2 cut(s)	351, 650
DpnI	GATC	2 cut(s)	133, 878
DpnII	GATC	2 cut(s)	131, 876
EaeI	YGGCCR	2 cut(s)	49, 340
Eam1104I	CTCTTC	2 cut(s)	131, 945
EarI	CTCTTC	2 cut(s)	131, 945
EciI	GGCGGA	1 cut(s)	320
Ecl136II	GAGCTC	1 cut(s)	7
Eco24I	GRGCYC	1 cut(s)	9
Eco47I	GGWCC	1 cut(s)	364
Eco47III	AGCGCT	1 cut(s)	846
Eco53kI	GAGCTC	1 cut(s)	7
Eco57I	CTGAAG	3 cut(s)	315, 344, 725
EcoICRI	GAGCTC	1 cut(s)	7
EcoRII	CCWGG	2 cut(s)	46, 743
EcoT38I	GRGCYC	1 cut(s)	9
FaeI	CATG	8 cut(s)	118, 497, 566, 632, 685, 873, 886, 955
FalI	AAGNNNNNCTT	2 cut(s)	263, 295
FaqI	GGGAC	4 cut(s)	150, 241, 284, 482
FatI	CATG	8 cut(s)	114, 493, 562, 628, 681, 869, 882, 951
FauI	CCCGC	1 cut(s)	293
Fnu4HI	GCNGC	4 cut(s)	27, 30, 356, 396
FokI	GGATG	2 cut(s)	632, 946
FriOI	GRGCYC	1 cut(s)	9
Fsp4HI	GCNGC	4 cut(s)	27, 30, 356, 396
GlaI	GCGC	1 cut(s)	846
GluI	GCNGC	4 cut(s)	27, 30, 356, 396
GsaI	CCCAGC	1 cut(s)	528
GsuI	CTGGAG	1 cut(s)	798
HaeII	RGCGCY	1 cut(s)	848
HaeIII	GGCC	3 cut(s)	51, 342, 395
HapII	CCGG	3 cut(s)	15, 445, 866
HhaI	GCGC	1 cut(s)	847
Hin1II	CATG	8 cut(s)	118, 497, 566, 632, 685, 873, 886, 955
Hin6I	GCGC	1 cut(s)	845
HinP1I	GCGC	1 cut(s)	845
HinfI	GANTC	2 cut(s)	448, 547
HpaII	CCGG	3 cut(s)	15, 445, 866
HphI	GGTGA	7 cut(s)	36, 136, 400, 590, 746, 851, 855
Hpy166II	GTNNAC	3 cut(s)	144, 491, 863
Hpy188I	TCNGA	5 cut(s)	131, 453, 541, 670, 705
Hpy188III	TCNNGA	4 cut(s)	367, 445, 563, 815
Hpy8I	GTNNAC	3 cut(s)	144, 491, 863
HpyAV	CCTTC	2 cut(s)	313, 742
HpyCH4III	ACNGT	4 cut(s)	22, 141, 403, 860
HpyCH4IV	ACGT	1 cut(s)	345
HpyCH4V	TGCA	3 cut(s)	583, 632, 793
HpyF10VI	GCNNNNNNNGC	4 cut(s)	339, 392, 482, 589
HpySE526I	ACGT	1 cut(s)	345
Hsp92II	CATG	8 cut(s)	118, 497, 566, 632, 685, 873, 886, 955
HspAI	GCGC	1 cut(s)	845
Kpn2I	TCCGGA	1 cut(s)	444
KpnI	GGTACC	1 cut(s)	653
Kzo9I	GATC	2 cut(s)	131, 876
LmnI	GCTCC	4 cut(s)	4, 383, 447, 817
Lsp1109I	GCAGC	2 cut(s)	38, 41
LweI	GCATC	1 cut(s)	968
MaeII	ACGT	1 cut(s)	345
MalI	GATC	2 cut(s)	133, 878
MboI	GATC	2 cut(s)	131, 876
MboII	GAAGA	6 cut(s)	118, 411, 414, 417, 420, 932
MhlI	GDGCHC	1 cut(s)	9
MlsI	TGGCCA	1 cut(s)	51
MluCI	AATT	2 cut(s)	529, 699
MluNI	TGGCCA	1 cut(s)	51
MmeI	TCCRAC	1 cut(s)	519
Mox20I	TGGCCA	1 cut(s)	51
MroI	TCCGGA	1 cut(s)	444
MscI	TGGCCA	1 cut(s)	51
MseI	TTAA	5 cut(s)	555, 642, 675, 822, 855
MslI	CAYNNNNRTG	2 cut(s)	555, 868
Msp20I	TGGCCA	1 cut(s)	51
MspI	CCGG	3 cut(s)	15, 445, 866
MspR9I	CCNGG	2 cut(s)	48, 745
MvaI	CCWGG	2 cut(s)	48, 745
MvnI	CGCG	1 cut(s)	413
MwoI	GCNNNNNNNGC	4 cut(s)	339, 392, 482, 589
NdeII	GATC	2 cut(s)	131, 876
NlaIII	CATG	8 cut(s)	118, 497, 566, 632, 685, 873, 886, 955
NlaIV	GGNNCC	1 cut(s)	651
NspI	RCATGY	1 cut(s)	497
PagI	TCATGA	1 cut(s)	562
PciI	ACATGT	1 cut(s)	493
PcsI	WCGNNNNNNNCGW	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	448, 547
Pfl23II	CGTACG	1 cut(s)	350
PfoI	TCCNGGA	1 cut(s)	743
PkrI	GCNGC	4 cut(s)	28, 31, 357, 397
PscI	ACATGT	1 cut(s)	493
Psp124BI	GAGCTC	1 cut(s)	9
Psp6I	CCWGG	2 cut(s)	46, 743
PspFI	CCCAGC	1 cut(s)	524
PspGI	CCWGG	2 cut(s)	46, 743
PspLI	CGTACG	1 cut(s)	350
PspN4I	GGNNCC	1 cut(s)	651
PspPI	GGNCC	2 cut(s)	364, 393
RsaI	GTAC	2 cut(s)	352, 651
RsaNI	GTAC	2 cut(s)	351, 650
RseI	CAYNNNNRTG	2 cut(s)	555, 868
SacI	GAGCTC	1 cut(s)	9
SaqAI	TTAA	5 cut(s)	555, 642, 675, 822, 855
SatI	GCNGC	4 cut(s)	27, 30, 356, 396
Sau3AI	GATC	2 cut(s)	131, 876
Sau96I	GGNCC	2 cut(s)	364, 393
ScrFI	CCNGG	2 cut(s)	48, 745
SduI	GDGCHC	1 cut(s)	9
SfaNI	GCATC	1 cut(s)	968
SinI	GGWCC	1 cut(s)	364
SmiMI	CAYNNNNRTG	2 cut(s)	555, 868
Sse9I	AATT	2 cut(s)	529, 699
SsiI	CCGC	7 cut(s)	286, 331, 356, 396, 411, 653, 799
SstI	GAGCTC	1 cut(s)	9
StyD4I	CCNGG	2 cut(s)	46, 743
TaaI	ACNGT	4 cut(s)	22, 141, 403, 860
TaiI	ACGT	1 cut(s)	348
TaqI	TCGA	2 cut(s)	462, 946
TasI	AATT	2 cut(s)	529, 699
TauI	GCSGC	2 cut(s)	358, 398
TfiI	GAWTC	2 cut(s)	448, 547
Tru1I	TTAA	5 cut(s)	555, 642, 675, 822, 855
Tru9I	TTAA	5 cut(s)	555, 642, 675, 822, 855
TscAI	CASTG	2 cut(s)	298, 662
TseI	GCWGC	2 cut(s)	26, 29
TspDTI	ATGAA	1 cut(s)	131
TspGWI	ACGGA	3 cut(s)	316, 338, 952
TspRI	CASTG	2 cut(s)	298, 662
VpaK11BI	GGWCC	1 cut(s)	364
XapI	RAATTY	1 cut(s)	529
XceI	RCATGY	1 cut(s)	497
XcmI	CCANNNNNNNNNTGG	1 cut(s)	774

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.