Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

18069449 .. 18073129

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G44785.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGAATTTGATCTCAAGAACATTGACAAGAGCAGTGTCTTCGTCACTATACCACTCAAAAGCAGCGAAGCTCCCCACTCAAAAATGGATAATCTCGCAGCAAATCCGTGTTTTCTCCGCCACAGTCATCAGCGGTGGAGGAAAGAAACCTCTGGCAAAAGTATCTGTGAAACCACCGCTAAATGTAGCGACGGAGAAAGAATCGACTCCGCCAAAGAAAATTGAGTACAAACCGGAAATTTCAAACTGGATCAACCTAATCGGATTCGTTGAACAACCAGTTCAATTCGGTCCTTGCTCCGATGGAAAATTCTGGGCTGGAACAGTTATTTCTCAGCGTTCTGGTTCAAAATCATCTAATTTCTGGATTCCGATTATATTCGAAGGAGATTTAGCTAAAATTGCAGTTCAACATGTAAAGAAAGAAGATCGGATTCATGTTTCCGGGAAGCTGTTTATTGATTCGCCTCCTCCAAATGTGACATATTCTCAATCCAATGTTCAGGTTATGGTTCAGAATCTTAACTTCGTACAAGCTGCTACTTCTACGACTAAGACGATCTCACCACCTGAAAAAGAAGTTACCAGCATCAAGAAAAAGCCCGCAAGATCCAAAAAGGTTAAAGTCATAGATGAAGAAACCTCTAATTCTTGGAAGCATCTTATTGAAAATCCTAAAGAGTGGTTGGATCACCGTGGGAATAAAGCTAACGGATTGGTAAAGCCAGGACATCCCGATTTCAAGATGAAGGTTGGTGGTTTGTCCCTGTGGCTCAGCACAGCTCCTGATTGGGCTTTGCTAAAACTCGAAGAGCTTAAGTTTGATGTCTTAGTCCCTAAAGGAAACATCAAACTGAATCAACTTAAAGGAGAGGAATCTTGGAAGGATTTGGTTCAGAACCCAGACAAATGGTTAGACAACAGATCAGATAAGACAAACGTGAAATACCCTGACTTCAAGCATAAAGAGACTGGTGAAGCACTGTGGATGACCAATTCTCCTATTTGGGTACTGTCAAAGTTACCACCTCTAAAGAAGAACCAAGAAAGACCTTTCATGTCTAATAAAGTCTCGCAGCTTGAGCTTGACGTTGAAGTACCTAAAGGAAATCTGAAACAGCTTAAAAGAGAGGAAATTTGGAAGAACTTGGTTGAGAACCCCAGTAAATGGTGGGATAACAGATTAGACAAGAGAAACCCTAAAGGCCCTGACTTTAAGCACAAGGAGACCGGTGAAGCACTGTGGATAGGTGATTCTCCGACTTGGGCGCTGTCAAAGTTACCACCTCTAAAGAAAAACCAAGAAAGACCTGTCATGGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

440

Amino Acids

49.9

Weight (kDa)

9.74

Isoelectric Point (pI)

36.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	1167
AciI	CCGC	5 cut(s)	117, 132, 176, 209, 603
AclWI	GGATC	3 cut(s)	257, 603, 696
AcsI	RAATTY	4 cut(s)	4, 237, 308, 1134
AfaI	GTAC	4 cut(s)	227, 531, 1011, 1098
AfiI	CCNNNNNNNGG	1 cut(s)	1167
AflII	CTTAAG	1 cut(s)	815
AflIII	ACRYGT	1 cut(s)	412
AgeI	ACCGGT	1 cut(s)	1229
AgsI	TTSAA	9 cut(s)	243, 272, 284, 348, 410, 668, 742, 958, 1094
AjnI	CCWGG	1 cut(s)	724
Alw26I	GTCTC	3 cut(s)	962, 1075, 1220
AlwI	GGATC	3 cut(s)	257, 603, 696
AlwNI	CAGNNNCTG	1 cut(s)	785
AoxI	GGCC	2 cut(s)	1204, 1317
ApeKI	GCWGC	4 cut(s)	62, 97, 536, 1075
ApoI	RAATTY	4 cut(s)	4, 237, 308, 1134
AsiGI	ACCGGT	1 cut(s)	1229
AspLEI	GCGC	1 cut(s)	1270
AspS9I	GGNCC	2 cut(s)	290, 1205
AsuC2I	CCSGG	1 cut(s)	445
AsuHPI	GGTGA	5 cut(s)	555, 683, 986, 1244, 1262
AsuII	TTCGAA	1 cut(s)	381
AvaII	GGWCC	1 cut(s)	290
BbsI	GAAGAC	1 cut(s)	30
BbvI	GCAGC	4 cut(s)	74, 109, 523, 1087
BccI	CCATC	1 cut(s)	296
BcgI	CGANNNNNNTGC	2 cut(s)	21, 55
BciT130I	CCWGG	1 cut(s)	726
BcnI	CCSGG	1 cut(s)	445
BcoDI	GTCTC	3 cut(s)	962, 1075, 1220
BfoI	RGCGCY	1 cut(s)	1271
BfrI	CTTAAG	1 cut(s)	815
BisI	GCNGC	4 cut(s)	63, 98, 537, 1076
BlpI	GCTNAGC	1 cut(s)	773
BlsI	GCNGC	4 cut(s)	64, 99, 538, 1077
Bme1390I	CCNGG	2 cut(s)	445, 726
Bme18I	GGWCC	1 cut(s)	290
BmgT120I	GGNCC	2 cut(s)	290, 1205
BmrFI	CCNGG	2 cut(s)	445, 726
BmrI	ACTGGG	1 cut(s)	1155
BmsI	GCATC	2 cut(s)	597, 667
BmuI	ACTGGG	1 cut(s)	1155
BpiI	GAAGAC	1 cut(s)	30
Bpu1102I	GCTNAGC	1 cut(s)	773
Bpu14I	TTCGAA	1 cut(s)	381
BpuEI	CTTGAG	1 cut(s)	1100
BpuMI	CCSGG	1 cut(s)	445
BsaI	GGTCTC	1 cut(s)	1220
BsaJI	CCNNGG	1 cut(s)	694
BsaWI	WCCGGW	2 cut(s)	232, 1229
BsaXI	ACNNNNNCTCC	2 cut(s)	982, 1012
Bsc4I	CCNNNNNNNGG	1 cut(s)	1167
Bse118I	RCCGGY	1 cut(s)	1229
Bse1I	ACTGG	4 cut(s)	251, 278, 976, 1161
BseBI	CCWGG	1 cut(s)	726
BseDI	CCNNGG	1 cut(s)	694
BseGI	GGATG	2 cut(s)	730, 993
BseLI	CCNNNNNNNGG	1 cut(s)	1167
BseMII	CTCAG	2 cut(s)	347, 787
BseNI	ACTGG	4 cut(s)	251, 278, 976, 1161
BseRI	GAGGAG	1 cut(s)	459
BseXI	GCAGC	4 cut(s)	74, 109, 523, 1087
BshFI	GGCC	2 cut(s)	1206, 1319
BshTI	ACCGGT	1 cut(s)	1229
BsiSI	CCGG	3 cut(s)	233, 444, 1230
BslFI	GGGAC	2 cut(s)	748, 818
BslI	CCNNNNNNNGG	1 cut(s)	1167
BsmAI	GTCTC	3 cut(s)	962, 1075, 1220
BsmFI	GGGAC	2 cut(s)	748, 818
BsnI	GGCC	2 cut(s)	1206, 1319
Bso31I	GGTCTC	1 cut(s)	1220
Bsp119I	TTCGAA	1 cut(s)	381
Bsp143I	GATC	7 cut(s)	9, 249, 427, 558, 608, 688, 923
Bsp1720I	GCTNAGC	1 cut(s)	773
BspACI	CCGC	5 cut(s)	117, 132, 176, 209, 603
BspANI	GGCC	2 cut(s)	1206, 1319
BspCNI	CTCAG	2 cut(s)	346, 786
BspPI	GGATC	3 cut(s)	257, 603, 696
BspQI	GCTCTTC	1 cut(s)	804
BspT104I	TTCGAA	1 cut(s)	381
BspTI	CTTAAG	1 cut(s)	815
BspTNI	GGTCTC	1 cut(s)	1220
BsrFI	RCCGGY	1 cut(s)	1229
BsrI	ACTGG	4 cut(s)	251, 278, 976, 1161
BssAI	RCCGGY	1 cut(s)	1229
BssECI	CCNNGG	1 cut(s)	694
BssMI	GATC	7 cut(s)	9, 249, 427, 558, 608, 688, 923
Bst2UI	CCWGG	1 cut(s)	726
Bst4CI	ACNGT	6 cut(s)	124, 325, 695, 984, 1014, 1242
Bst6I	CTCTTC	1 cut(s)	804
BstAFI	CTTAAG	1 cut(s)	815
BstBI	TTCGAA	1 cut(s)	381
BstC8I	GCNNGC	1 cut(s)	603
BstDEI	CTNAG	4 cut(s)	333, 552, 773, 829
BstDSI	CCRYGG	1 cut(s)	694
BstF5I	GGATG	2 cut(s)	730, 993
BstH2I	RGCGCY	1 cut(s)	1271
BstHHI	GCGC	1 cut(s)	1270
BstKTI	GATC	7 cut(s)	12, 252, 430, 561, 611, 691, 926
BstMAI	GTCTC	3 cut(s)	962, 1075, 1220
BstMBI	GATC	7 cut(s)	9, 249, 427, 558, 608, 688, 923
BstMWI	GCNNNNNNNGC	2 cut(s)	401, 1081
BstNI	CCWGG	1 cut(s)	726
BstNSI	RCATGY	1 cut(s)	416
BstSCI	CCNGG	2 cut(s)	443, 724
BstV1I	GCAGC	4 cut(s)	74, 109, 523, 1087
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	608
BstXI	CCANNNNNNTGG	1 cut(s)	909
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	2 cut(s)	1206, 1319
BtgI	CCRYGG	1 cut(s)	694
BtsCI	GGATG	2 cut(s)	730, 993
BtsI	GCAGTG	1 cut(s)	39
BtsIMutI	CAGTG	3 cut(s)	39, 980, 1238
Cac8I	GCNNGC	1 cut(s)	603
CaiI	CAGNNNCTG	1 cut(s)	785
CfoI	GCGC	1 cut(s)	1270
Cfr10I	RCCGGY	1 cut(s)	1229
Cfr13I	GGNCC	2 cut(s)	290, 1205
Csp6I	GTAC	4 cut(s)	226, 530, 1010, 1097
CspAI	ACCGGT	1 cut(s)	1229
CviAII	CATG	4 cut(s)	413, 437, 1057, 1315
CviQI	GTAC	4 cut(s)	226, 530, 1010, 1097
DdeI	CTNAG	4 cut(s)	333, 552, 773, 829
DpnI	GATC	7 cut(s)	11, 251, 429, 560, 610, 690, 925
DpnII	GATC	7 cut(s)	9, 249, 427, 558, 608, 688, 923
Eam1104I	CTCTTC	1 cut(s)	804
EarI	CTCTTC	1 cut(s)	804
EciI	GGCGGA	2 cut(s)	106, 198
Eco31I	GGTCTC	1 cut(s)	1220
Eco47I	GGWCC	1 cut(s)	290
EcoO109I	RGGNCCY	1 cut(s)	1205
EcoRII	CCWGG	1 cut(s)	724
FaeI	CATG	4 cut(s)	416, 440, 1060, 1318
FaqI	GGGAC	2 cut(s)	748, 818
FatI	CATG	4 cut(s)	412, 436, 1056, 1314
FauI	CCCGC	1 cut(s)	610
Fnu4HI	GCNGC	4 cut(s)	63, 98, 537, 1076
FokI	GGATG	2 cut(s)	717, 1000
Fsp4HI	GCNGC	4 cut(s)	63, 98, 537, 1076
GlaI	GCGC	1 cut(s)	1269
GluI	GCNGC	4 cut(s)	63, 98, 537, 1076
HaeII	RGCGCY	1 cut(s)	1271
HaeIII	GGCC	2 cut(s)	1206, 1319
HapII	CCGG	3 cut(s)	233, 444, 1230
HhaI	GCGC	1 cut(s)	1270
Hin1II	CATG	4 cut(s)	416, 440, 1060, 1318
Hin6I	GCGC	1 cut(s)	1268
HinP1I	GCGC	1 cut(s)	1268
HpaII	CCGG	3 cut(s)	233, 444, 1230
HphI	GGTGA	5 cut(s)	555, 683, 986, 1244, 1262
Hpy188I	TCNGA	9 cut(s)	263, 301, 372, 432, 516, 897, 928, 1113, 1260
Hpy188III	TCNNGA	6 cut(s)	15, 364, 592, 734, 742, 785
Hpy99I	CGWCG	1 cut(s)	193
HpyAV	CCTTC	3 cut(s)	377, 742, 877
HpyCH4III	ACNGT	6 cut(s)	124, 325, 695, 984, 1014, 1242
HpyCH4IV	ACGT	2 cut(s)	939, 1089
HpyCH4V	TGCA	1 cut(s)	404
HpyF10VI	GCNNNNNNNGC	2 cut(s)	401, 1081
HpyF3I	CTNAG	4 cut(s)	333, 552, 773, 829
HpySE526I	ACGT	2 cut(s)	939, 1089
Hsp92II	CATG	4 cut(s)	416, 440, 1060, 1318
HspAI	GCGC	1 cut(s)	1268
Kzo9I	GATC	7 cut(s)	9, 249, 427, 558, 608, 688, 923
LguI	GCTCTTC	1 cut(s)	804
LmnI	GCTCC	3 cut(s)	75, 302, 787
Lsp1109I	GCAGC	4 cut(s)	74, 109, 523, 1087
LweI	GCATC	2 cut(s)	597, 667
MaeII	ACGT	2 cut(s)	939, 1089
MaeIII	GTNAC	5 cut(s)	42, 478, 580, 1020, 1278
MalI	GATC	7 cut(s)	11, 251, 429, 560, 610, 690, 925
MboI	GATC	7 cut(s)	9, 249, 427, 558, 608, 688, 923
MboII	GAAGA	6 cut(s)	30, 437, 647, 821, 1048, 1153
MflI	RGATCY	1 cut(s)	608
MlyI	GAGTC	1 cut(s)	199
MmeI	TCCRAC	2 cut(s)	666, 1283
MnlI	CCTC	9 cut(s)	131, 159, 477, 480, 652, 865, 1038, 1123, 1296
MseI	TTAA	6 cut(s)	522, 621, 816, 864, 1122, 1215
MspA1I	CMGCKG	1 cut(s)	132
MspCI	CTTAAG	1 cut(s)	815
MspI	CCGG	3 cut(s)	233, 444, 1230
MspR9I	CCNGG	2 cut(s)	445, 726
MvaI	CCWGG	1 cut(s)	726
MwoI	GCNNNNNNNGC	2 cut(s)	401, 1081
NciI	CCSGG	1 cut(s)	445
NdeII	GATC	7 cut(s)	9, 249, 427, 558, 608, 688, 923
NlaIII	CATG	4 cut(s)	416, 440, 1060, 1318
NmuCI	GTSAC	2 cut(s)	42, 478
NspI	RCATGY	1 cut(s)	416
NspV	TTCGAA	1 cut(s)	381
PciI	ACATGT	1 cut(s)	412
PciSI	GCTCTTC	1 cut(s)	804
PcsI	WCGNNNNNNNCGW	1 cut(s)	554
PfeI	GAWTC	9 cut(s)	200, 264, 367, 433, 461, 517, 856, 875, 1253
PflMI	CCANNNNNTGG	1 cut(s)	1167
PfoI	TCCNGGA	1 cut(s)	443
PinAI	ACCGGT	1 cut(s)	1229
PkrI	GCNGC	4 cut(s)	64, 99, 538, 1077
PleI	GAGTC	1 cut(s)	199
PpsI	GAGTC	1 cut(s)	199
PscI	ACATGT	1 cut(s)	412
Psp6I	CCWGG	1 cut(s)	724
PspGI	CCWGG	1 cut(s)	724
PspPI	GGNCC	2 cut(s)	290, 1205
PstNI	CAGNNNCTG	1 cut(s)	785
PsuI	RGATCY	1 cut(s)	608
RsaI	GTAC	4 cut(s)	227, 531, 1011, 1098
RsaNI	GTAC	4 cut(s)	226, 530, 1010, 1097
SapI	GCTCTTC	1 cut(s)	804
SaqAI	TTAA	6 cut(s)	522, 621, 816, 864, 1122, 1215
SatI	GCNGC	4 cut(s)	63, 98, 537, 1076
Sau3AI	GATC	7 cut(s)	9, 249, 427, 558, 608, 688, 923
Sau96I	GGNCC	2 cut(s)	290, 1205
SchI	GAGTC	1 cut(s)	199
ScrFI	CCNGG	2 cut(s)	445, 726
SfaNI	GCATC	2 cut(s)	597, 667
SfuI	TTCGAA	1 cut(s)	381
SinI	GGWCC	1 cut(s)	290
SmlI	CTYRAG	3 cut(s)	13, 815, 1079
SmoI	CTYRAG	3 cut(s)	13, 815, 1079
SsiI	CCGC	5 cut(s)	117, 132, 176, 209, 603
StyD4I	CCNGG	2 cut(s)	443, 724
TaaI	ACNGT	6 cut(s)	124, 325, 695, 984, 1014, 1242
TaiI	ACGT	2 cut(s)	942, 1092
TaqI	TCGA	3 cut(s)	203, 381, 807
TaqII	GACCGA	1 cut(s)	278
TatI	WGTACW	1 cut(s)	225
TfiI	GAWTC	9 cut(s)	200, 264, 367, 433, 461, 517, 856, 875, 1253
Tru1I	TTAA	6 cut(s)	522, 621, 816, 864, 1122, 1215
Tru9I	TTAA	6 cut(s)	522, 621, 816, 864, 1122, 1215
TscAI	CASTG	3 cut(s)	39, 987, 1245
TseFI	GTSAC	2 cut(s)	42, 478
TseI	GCWGC	4 cut(s)	62, 97, 536, 1075
Tsp45I	GTSAC	2 cut(s)	42, 478
TspDTI	ATGAA	5 cut(s)	17, 425, 648, 761, 1045
TspGWI	ACGGA	3 cut(s)	95, 206, 726
TspRI	CASTG	3 cut(s)	39, 987, 1245
Van91I	CCANNNNNTGG	1 cut(s)	1167
Vha464I	CTTAAG	1 cut(s)	815
VpaK11BI	GGWCC	1 cut(s)	290
XapI	RAATTY	4 cut(s)	4, 237, 308, 1134
XceI	RCATGY	1 cut(s)	416

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.