Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5D

Orthogroup ID

OG0003609

Physical Location & Seq

Genomic Coordinates Reverse (-)

38652583 .. 38655396

Gene Structure 2814 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5DG306000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

ATGGCCTCCTCCCCCGACCACAACCACACCCTGAACGGCGATTCCAACACCCACGCCTCCAAAAAGCCCAAACTCTCCTTCATCAGCCCCTCCAAAATCGCCGCCGAATTCTCCCACCACGACCCCACCATCGCCCGAATCAACAACGGCAGCTTCGGGTCCTGCCCCGACTCCGTCCTCCAGGCCCAGCGCCGCTGGCAGCTCAAGTACCTCTCCCAGCCCGATCATTTCTACTTCAACCACCTCCAAGCCGGCATCCTCCACTCTCGCACCCTCATCAAGGACCTCATCAACGCCGACCACGTCGACGAGGTCTCCATCGTCGACAACGCCACCACCGCCGCCGCCATCGTCCTCCAGCAGGCCGCCTGGGGCTTCTCCGAGAGCAAGTTCGAGCAGGGCGACGCCGTCGTCATGCTCCACTACGCCTACGGCGCCGTCAAGAAGTCGATTGAGGCCTACGTCACTCGCGCCGGCGGGCACGTCATTGAGGTAAAGCGAAATCACCCTGATTTCAAGCATAAGGATGGTGGTCATGCACTCTGGCTTAACAAGGTACCGCAGTGGGTTTTGTCAGAGCTTAAAGGCATGGAGTTTGATGTTCCAATTCGGAAGTCCAAACAAGCAAATGAGGGTAGAGGTGATAAATCCTGGAAGGACTTGGTGGAAAACCCAGATAAATGGTGGGATAACAGATTGCAGAAGCTAAACTGTCGGAACGCAAAAGCTCCAGACTTTAAGCACAAAGAAACTGGTGAAGCACTGTGGCTTAACAGTTCACCGGCATGGGCGATCCCCATGTTGCCACCTTTGAAAACACAGCAAAATATGACGACTGATGATAGGAATACACCTCTTTCTCGAAACATGGAAGCATCCGTTAGTGGTGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko00270 map00270

Pfam Domains

Protein Families

Aminotran_5

Protein Analysis

297

Amino Acids

33.33

Weight (kDa)

8.7

Isoelectric Point (pI)

41.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003609)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31010 AT4G20010 AT4G20010 AT5G44785 AT5G44785
fragaria_vesca	FvH4_3g12060 FvH4_3g12060 FvH4_3g12060
malus_domestica	MD05G1254900.v1.1 MD10G1235000.v1.1
prunus_persica	Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1 Prupe.4G108900_v2.0.a1
pyrus_communis	pycom05g23290
rosa_chinensis	RchiOBHm_Chr2g0098041 RchiOBHm_Chr5g0019771
rosa_laevigata	RLG00000032467
rosa_multiflora	Rmu_sc0014160.1_g000001 Rmu_sc0039603.1_g000001 Rmu_ssc0000062.1_g000028
rosa_roxburghii	Rroxscaffold_1G00058360
rosa_rugosa	Rorug05G0053800 Rorug05G0053900
rosa_samantha	Rh2DG121400 Rh5AG144300 Rh5BG143000 Rh5BG296500 Rh5CG154800 Rh5DG143300 Rh5DG306000 Rh6AG080900 Rh7AG221200 Rh7DG348200
rosa_wichuraiana	Rw4G019420 Rw5G012760

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	410
Acc65I	GGTACC	1 cut(s)	556
AccB1I	GGYRCC	2 cut(s)	434, 556
AccI	GTMKAC	2 cut(s)	306, 324
AccII	CGCG	1 cut(s)	471
AciI	CCGC	8 cut(s)	102, 193, 339, 342, 345, 366, 477, 560
AclWI	GGATC	1 cut(s)	787
AcsI	RAATTY	1 cut(s)	107
AcyI	GRCGYC	2 cut(s)	405, 435
AfaI	GTAC	2 cut(s)	209, 558
AfiI	CCNNNNNNNGG	2 cut(s)	280, 361
AgsI	TTSAA	3 cut(s)	238, 517, 814
AjiI	CACGTC	2 cut(s)	304, 484
AjnI	CCWGG	3 cut(s)	180, 368, 650
AjuI	GAANNNNNNNTTGG	2 cut(s)	62, 94
AloI	GAACNNNNNNTCC	2 cut(s)	26, 58
AluBI	AGCT	5 cut(s)	153, 202, 580, 706, 728
AluI	AGCT	5 cut(s)	153, 202, 580, 706, 728
Alw26I	GTCTC	1 cut(s)	319
AlwI	GGATC	1 cut(s)	787
AoxI	GGCC	4 cut(s)	3, 183, 363, 456
ApeKI	GCWGC	2 cut(s)	150, 199
ApoI	RAATTY	1 cut(s)	107
Asp718I	GGTACC	1 cut(s)	556
AspLEI	GCGC	3 cut(s)	192, 437, 473
AspS9I	GGNCC	3 cut(s)	159, 184, 283
AsuHPI	GGTGA	4 cut(s)	497, 653, 767, 771
AvaII	GGWCC	2 cut(s)	159, 283
BaeGI	GKGCMC	1 cut(s)	483
BaeI	ACNNNNGTAYC	2 cut(s)	548, 581
BanI	GGYRCC	2 cut(s)	434, 556
BbvI	GCAGC	2 cut(s)	162, 211
BccI	CCATC	4 cut(s)	137, 326, 356, 521
BceAI	ACGGC	5 cut(s)	52, 163, 392, 422, 448
BciT130I	CCWGG	3 cut(s)	182, 370, 652
BcoDI	GTCTC	1 cut(s)	319
BfoI	RGCGCY	2 cut(s)	193, 438
BisI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
BlsI	GCNGC	7 cut(s)	103, 152, 194, 201, 343, 346, 367
Bme1390I	CCNGG	3 cut(s)	182, 370, 652
Bme18I	GGWCC	2 cut(s)	159, 283
BmgBI	CACGTC	2 cut(s)	304, 484
BmgT120I	GGNCC	3 cut(s)	159, 184, 283
BmiI	GGNNCC	3 cut(s)	160, 436, 558
BmrFI	CCNGG	3 cut(s)	182, 370, 652
BmsI	GCATC	2 cut(s)	264, 884
BpmI	CTGGAG	3 cut(s)	164, 341, 714
BpuEI	CTTGAG	1 cut(s)	188
BsaHI	GRCGYC	2 cut(s)	405, 435
BsaI	GGTCTC	1 cut(s)	319
BsaJI	CCNNGG	1 cut(s)	369
BsaXI	ACNNNNNCTCC	2 cut(s)	299, 329
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 361
Bse118I	RCCGGY	3 cut(s)	251, 473, 781
Bse1I	ACTGG	1 cut(s)	757
BseBI	CCWGG	3 cut(s)	182, 370, 652
BseDI	CCNNGG	1 cut(s)	369
BseGI	GGATG	3 cut(s)	255, 532, 875
BseLI	CCNNNNNNNGG	2 cut(s)	280, 361
BseNI	ACTGG	1 cut(s)	757
BseSI	GKGCMC	1 cut(s)	483
BseXI	GCAGC	2 cut(s)	162, 211
BseYI	CCCAGC	2 cut(s)	186, 216
Bsh1236I	CGCG	1 cut(s)	471
BshFI	GGCC	4 cut(s)	5, 185, 365, 458
BshNI	GGYRCC	2 cut(s)	434, 556
BsiSI	CCGG	3 cut(s)	252, 474, 782
BslI	CCNNNNNNNGG	2 cut(s)	280, 361
BsmAI	GTCTC	1 cut(s)	319
BsnI	GGCC	4 cut(s)	5, 185, 365, 458
Bso31I	GGTCTC	1 cut(s)	319
Bsp1286I	GDGCHC	1 cut(s)	483
Bsp143I	GATC	2 cut(s)	223, 792
BspACI	CCGC	8 cut(s)	102, 193, 339, 342, 345, 366, 477, 560
BspANI	GGCC	4 cut(s)	5, 185, 365, 458
BspFNI	CGCG	1 cut(s)	471
BspLI	GGNNCC	3 cut(s)	160, 436, 558
BspPI	GGATC	1 cut(s)	787
BspT107I	GGYRCC	2 cut(s)	434, 556
BspTNI	GGTCTC	1 cut(s)	319
BsrFI	RCCGGY	3 cut(s)	251, 473, 781
BsrI	ACTGG	1 cut(s)	757
BssAI	RCCGGY	3 cut(s)	251, 473, 781
BssECI	CCNNGG	1 cut(s)	369
BssMI	GATC	2 cut(s)	223, 792
BssNI	GRCGYC	2 cut(s)	405, 435
Bst2UI	CCWGG	3 cut(s)	182, 370, 652
Bst4CI	ACNGT	3 cut(s)	713, 765, 776
BstACI	GRCGYC	2 cut(s)	405, 435
BstC8I	GCNNGC	5 cut(s)	197, 253, 363, 475, 479
BstENI	CCTNNNNNAGG	2 cut(s)	278, 359
BstF5I	GGATG	3 cut(s)	255, 532, 875
BstFNI	CGCG	1 cut(s)	471
BstH2I	RGCGCY	2 cut(s)	193, 438
BstHHI	GCGC	3 cut(s)	192, 437, 473
BstKTI	GATC	2 cut(s)	226, 795
BstMAI	GTCTC	1 cut(s)	319
BstMBI	GATC	2 cut(s)	223, 792
BstMWI	GCNNNNNNNGC	3 cut(s)	196, 338, 434
BstNI	CCWGG	3 cut(s)	182, 370, 652
BstSCI	CCNGG	3 cut(s)	180, 368, 650
BstSLI	GKGCMC	1 cut(s)	483
BstUI	CGCG	1 cut(s)	471
BstV1I	GCAGC	2 cut(s)	162, 211
BstXI	CCANNNNNNTGG	1 cut(s)	681
BsuRI	GGCC	4 cut(s)	5, 185, 365, 458
BtgZI	GCGATG	1 cut(s)	115
BtrI	CACGTC	2 cut(s)	304, 484
BtsCI	GGATG	3 cut(s)	255, 532, 875
BtsI	GCAGTG	1 cut(s)	569
BtsIMutI	CAGTG	2 cut(s)	569, 761
Cac8I	GCNNGC	5 cut(s)	197, 253, 363, 475, 479
CfoI	GCGC	3 cut(s)	192, 437, 473
Cfr10I	RCCGGY	3 cut(s)	251, 473, 781
Cfr13I	GGNCC	3 cut(s)	159, 184, 283
CseI	GACGC	1 cut(s)	413
Csp6I	GTAC	2 cut(s)	208, 557
CviAII	CATG	6 cut(s)	415, 536, 589, 786, 799, 868
CviQI	GTAC	2 cut(s)	208, 557
DinI	GGCGCC	1 cut(s)	436
DpnI	GATC	2 cut(s)	225, 794
DpnII	GATC	2 cut(s)	223, 792
DrdI	GACNNNNNNGTC	1 cut(s)	410
DseDI	GACNNNNNNGTC	1 cut(s)	410
Eco147I	AGGCCT	1 cut(s)	458
Eco31I	GGTCTC	1 cut(s)	319
Eco47I	GGWCC	2 cut(s)	159, 283
EcoNI	CCTNNNNNAGG	2 cut(s)	278, 359
EcoO109I	RGGNCCY	2 cut(s)	159, 283
EcoRI	GAATTC	1 cut(s)	107
EcoRII	CCWGG	3 cut(s)	180, 368, 650
EgeI	GGCGCC	1 cut(s)	436
EheI	GGCGCC	1 cut(s)	436
FaeI	CATG	6 cut(s)	418, 539, 592, 789, 802, 871
FaiI	YATR	8 cut(s)	416, 522, 537, 590, 787, 800, 830, 869
FatI	CATG	6 cut(s)	414, 535, 588, 785, 798, 867
FauI	CCCGC	1 cut(s)	470
FblI	GTMKAC	2 cut(s)	306, 324
Fnu4HI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
FokI	GGATG	3 cut(s)	242, 539, 862
Fsp4HI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
GlaI	GCGC	3 cut(s)	191, 436, 472
GluI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
GsaI	CCCAGC	2 cut(s)	190, 220
GsuI	CTGGAG	3 cut(s)	164, 341, 714
HaeII	RGCGCY	2 cut(s)	193, 438
HaeIII	GGCC	4 cut(s)	5, 185, 365, 458
HapII	CCGG	3 cut(s)	252, 474, 782
HgaI	GACGC	1 cut(s)	413
HhaI	GCGC	3 cut(s)	192, 437, 473
Hin1I	GRCGYC	2 cut(s)	405, 435
Hin1II	CATG	6 cut(s)	418, 539, 592, 789, 802, 871
Hin6I	GCGC	3 cut(s)	190, 435, 471
HinP1I	GCGC	3 cut(s)	190, 435, 471
HincII	GTYRAC	2 cut(s)	307, 325
HindII	GTYRAC	2 cut(s)	307, 325
HinfI	GANTC	3 cut(s)	41, 138, 170
HpaII	CCGG	3 cut(s)	252, 474, 782
HphI	GGTGA	4 cut(s)	497, 653, 767, 771
Hpy166II	GTNNAC	3 cut(s)	307, 325, 779
Hpy188I	TCNGA	4 cut(s)	382, 577, 612, 717
Hpy188III	TCNNGA	3 cut(s)	442, 731, 861
Hpy8I	GTNNAC	3 cut(s)	307, 325, 779
Hpy99I	CGWCG	5 cut(s)	308, 311, 326, 407, 413
HpyAV	CCTTC	2 cut(s)	88, 649
HpyCH4III	ACNGT	3 cut(s)	713, 765, 776
HpyCH4IV	ACGT	3 cut(s)	303, 462, 483
HpyCH4V	TGCA	2 cut(s)	539, 700
HpyF10VI	GCNNNNNNNGC	3 cut(s)	196, 338, 434
HpySE526I	ACGT	3 cut(s)	303, 462, 483
Hsp92I	GRCGYC	2 cut(s)	405, 435
Hsp92II	CATG	6 cut(s)	418, 539, 592, 789, 802, 871
HspAI	GCGC	3 cut(s)	190, 435, 471
KasI	GGCGCC	1 cut(s)	434
KpnI	GGTACC	1 cut(s)	560
KroI	GCCGGC	2 cut(s)	251, 473
KroNI	GCCGGC	2 cut(s)	253, 475
Kzo9I	GATC	2 cut(s)	223, 792
LmnI	GCTCC	2 cut(s)	423, 733
Lsp1109I	GCAGC	2 cut(s)	162, 211
LweI	GCATC	2 cut(s)	264, 884
MaeII	ACGT	3 cut(s)	303, 462, 483
MaeIII	GTNAC	1 cut(s)	463
MalI	GATC	2 cut(s)	225, 794
MboI	GATC	2 cut(s)	223, 792
MhlI	GDGCHC	1 cut(s)	483
MluCI	AATT	2 cut(s)	107, 606
Mly113I	GGCGCC	1 cut(s)	435
MlyI	GAGTC	1 cut(s)	164
MmeI	TCCRAC	2 cut(s)	69, 695
MreI	CGCCGGCG	1 cut(s)	473
MroNI	GCCGGC	2 cut(s)	251, 473
MseI	TTAA	4 cut(s)	549, 582, 738, 771
MslI	CAYNNNNRTG	2 cut(s)	525, 784
MspA1I	CMGCKG	1 cut(s)	195
MspI	CCGG	3 cut(s)	252, 474, 782
MspR9I	CCNGG	3 cut(s)	182, 370, 652
MvaI	CCWGG	3 cut(s)	182, 370, 652
MvnI	CGCG	1 cut(s)	471
MwoI	GCNNNNNNNGC	3 cut(s)	196, 338, 434
NaeI	GCCGGC	2 cut(s)	253, 475
NarI	GGCGCC	1 cut(s)	435
NdeII	GATC	2 cut(s)	223, 792
NgoMIV	GCCGGC	2 cut(s)	251, 473
NlaIII	CATG	6 cut(s)	418, 539, 592, 789, 802, 871
NlaIV	GGNNCC	3 cut(s)	160, 436, 558
NmuCI	GTSAC	1 cut(s)	463
PceI	AGGCCT	1 cut(s)	458
PcsI	WCGNNNNNNNCGW	2 cut(s)	300, 399
PdiI	GCCGGC	2 cut(s)	253, 475
PfeI	GAWTC	2 cut(s)	41, 138
PflFI	GACNNNGTC	4 cut(s)	173, 302, 311, 407
PfoI	TCCNGGA	1 cut(s)	650
PkrI	GCNGC	7 cut(s)	103, 152, 194, 201, 343, 346, 367
PleI	GAGTC	1 cut(s)	164
PluTI	GGCGCC	1 cut(s)	438
PpsI	GAGTC	1 cut(s)	164
PpuMI	RGGWCCY	2 cut(s)	159, 283
Psp5II	RGGWCCY	2 cut(s)	159, 283
Psp6I	CCWGG	3 cut(s)	180, 368, 650
PspFI	CCCAGC	2 cut(s)	186, 216
PspGI	CCWGG	3 cut(s)	180, 368, 650
PspN4I	GGNNCC	3 cut(s)	160, 436, 558
PspPI	GGNCC	3 cut(s)	159, 184, 283
PspPPI	RGGWCCY	2 cut(s)	159, 283
PsyI	GACNNNGTC	4 cut(s)	173, 302, 311, 407
RsaI	GTAC	2 cut(s)	209, 558
RsaNI	GTAC	2 cut(s)	208, 557
RseI	CAYNNNNRTG	2 cut(s)	525, 784
SalI	GTCGAC	2 cut(s)	305, 323
SaqAI	TTAA	4 cut(s)	549, 582, 738, 771
SatI	GCNGC	7 cut(s)	102, 151, 193, 200, 342, 345, 366
Sau3AI	GATC	2 cut(s)	223, 792
Sau96I	GGNCC	3 cut(s)	159, 184, 283
SchI	GAGTC	1 cut(s)	164
ScrFI	CCNGG	3 cut(s)	182, 370, 652
SduI	GDGCHC	1 cut(s)	483
SfaNI	GCATC	2 cut(s)	264, 884
SfoI	GGCGCC	1 cut(s)	436
SgrAI	CRCCGGYG	1 cut(s)	473
SgrDI	CGTCGACG	1 cut(s)	305
SinI	GGWCC	2 cut(s)	159, 283
SmiMI	CAYNNNNRTG	2 cut(s)	525, 784
SmlI	CTYRAG	1 cut(s)	203
SmoI	CTYRAG	1 cut(s)	203
Sse9I	AATT	2 cut(s)	107, 606
SseBI	AGGCCT	1 cut(s)	458
SsiI	CCGC	8 cut(s)	102, 193, 339, 342, 345, 366, 477, 560
SspDI	GGCGCC	1 cut(s)	434
StuI	AGGCCT	1 cut(s)	458
StyD4I	CCNGG	3 cut(s)	180, 368, 650
TaaI	ACNGT	3 cut(s)	713, 765, 776
TaiI	ACGT	3 cut(s)	306, 465, 486
TaqI	TCGA	5 cut(s)	306, 324, 393, 449, 862
TasI	AATT	2 cut(s)	107, 606
TauI	GCSGC	5 cut(s)	104, 195, 344, 347, 368
TfiI	GAWTC	2 cut(s)	41, 138
Tru1I	TTAA	4 cut(s)	549, 582, 738, 771
Tru9I	TTAA	4 cut(s)	549, 582, 738, 771
TscAI	CASTG	2 cut(s)	569, 768
TseFI	GTSAC	1 cut(s)	463
TseI	GCWGC	2 cut(s)	150, 199
Tsp45I	GTSAC	1 cut(s)	463
TspDTI	ATGAA	1 cut(s)	70
TspGWI	ACGGA	2 cut(s)	163, 868
TspRI	CASTG	2 cut(s)	569, 768
Tth111I	GACNNNGTC	4 cut(s)	173, 302, 311, 407
VpaK11BI	GGWCC	2 cut(s)	159, 283
XagI	CCTNNNNNAGG	2 cut(s)	278, 359
XapI	RAATTY	1 cut(s)	107
XcmI	CCANNNNNNNNNTGG	1 cut(s)	681
XmiI	GTMKAC	2 cut(s)	306, 324

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.